RNA–Protein interactions for RNA: ENST00000517514.1

CLN8-202, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 4

Gene CLN8, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-202ENST00000517514 NISCHQ9Y2I1 1504 aa23.73■■□□□ 1.39
CLN8-202ENST00000517514 CCDC180Q9P1Z9 1646 aa20.96■□□□□ 0.95
CLN8-202ENST00000517514 ABCC9O60706 1549 aa20.2■□□□□ 0.82
CLN8-202ENST00000517514 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
CLN8-202ENST00000517514 DCAF1Q9Y4B6 1507 aa19.64■□□□□ 0.73
CLN8-202ENST00000517514 NACADO15069 1562 aa19.6■□□□□ 0.73
CLN8-202ENST00000517514 MYO15BQ96JP2 1530 aa19.59■□□□□ 0.73
CLN8-202ENST00000517514 DCAF8L2P0C7V8 631 aa19.57■□□□□ 0.72
CLN8-202ENST00000517514 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
CLN8-202ENST00000517514 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
CLN8-202ENST00000517514 SCRIBQ14160 1630 aa19.15■□□□□ 0.66
CLN8-202ENST00000517514 BICRAQ9NZM4 1560 aa19.06■□□□□ 0.64
CLN8-202ENST00000517514 PABPN1Q86U42 306 aaKnown RBP eCLIP18.91■□□□□ 0.62
CLN8-202ENST00000517514 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
CLN8-202ENST00000517514 CECR2Q9BXF3 1484 aa18.49■□□□□ 0.55
CLN8-202ENST00000517514 EIF4G1Q04637 1599 aaKnown RBP18.46■□□□□ 0.55
CLN8-202ENST00000517514 SMARCA4P51532 1647 aa18.36■□□□□ 0.53
CLN8-202ENST00000517514 DNAJC5BQ9UF47 199 aa18.34■□□□□ 0.53
CLN8-202ENST00000517514 MROH2BQ7Z745 1585 aa18.33■□□□□ 0.52
CLN8-202ENST00000517514 BAZ1AQ9NRL2 1556 aaPredicted RBP18.33■□□□□ 0.52
CLN8-202ENST00000517514 CC2D2AQ9P2K1 1620 aa18.32■□□□□ 0.52
CLN8-202ENST00000517514 RSF1Q96T23 1441 aaPredicted RBP18.2■□□□□ 0.5
CLN8-202ENST00000517514 PEG3Q9GZU2 1588 aa18.18■□□□□ 0.5
CLN8-202ENST00000517514 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
CLN8-202ENST00000517514 WIZO95785 1651 aa18.15■□□□□ 0.5
CLN8-202ENST00000517514 SMARCA2P51531 1590 aa18.11■□□□□ 0.49
CLN8-202ENST00000517514 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
CLN8-202ENST00000517514 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
CLN8-202ENST00000517514 BAZ1BQ9UIG0 1483 aaKnown RBP17.98■□□□□ 0.47
CLN8-202ENST00000517514 TOP2AP11388 1531 aaKnown RBP17.93■□□□□ 0.46
CLN8-202ENST00000517514 SUPT5HO00267 1087 aaKnown RBP17.88■□□□□ 0.45
CLN8-202ENST00000517514 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
CLN8-202ENST00000517514 NESP48681 1621 aa17.61■□□□□ 0.41
CLN8-202ENST00000517514 CADPSQ9ULU8 1353 aa17.56■□□□□ 0.4
CLN8-202ENST00000517514 LAMC3Q9Y6N6 1575 aa17.56■□□□□ 0.4
CLN8-202ENST00000517514 CFTRP13569 1480 aa17.55■□□□□ 0.4
CLN8-202ENST00000517514 PRDM2Q13029 1718 aa17.5■□□□□ 0.39
CLN8-202ENST00000517514 KIF21AQ7Z4S6 1674 aa17.44■□□□□ 0.38
CLN8-202ENST00000517514 PDS5BQ9NTI5 1447 aa17.37■□□□□ 0.37
CLN8-202ENST00000517514 FANCD2Q9BXW9 1451 aa17.37■□□□□ 0.37
CLN8-202ENST00000517514 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
CLN8-202ENST00000517514 ERCC6Q03468 1493 aa17.3■□□□□ 0.36
CLN8-202ENST00000517514 CEP164Q9UPV0 1460 aa17.3■□□□□ 0.36
CLN8-202ENST00000517514 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
CLN8-202ENST00000517514 MRC2Q9UBG0 1479 aa17.22■□□□□ 0.35
CLN8-202ENST00000517514 ABCC8Q09428 1581 aa17.19■□□□□ 0.34
CLN8-202ENST00000517514 WDR62O43379 1518 aa17.19■□□□□ 0.34
CLN8-202ENST00000517514 CUX1P39880 1505 aa17.17■□□□□ 0.34
CLN8-202ENST00000517514 DNMBPQ6XZF7 1577 aa17.15■□□□□ 0.34
CLN8-202ENST00000517514 TOPBP1Q92547 1522 aa17.15■□□□□ 0.34
CLN8-202ENST00000517514 SYNJ1O43426 1573 aa17.13■□□□□ 0.33
CLN8-202ENST00000517514 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
CLN8-202ENST00000517514 WRNQ14191 1432 aaPredicted RBP eCLIP17.09■□□□□ 0.33
CLN8-202ENST00000517514 TOP2BQ02880 1626 aa17.08■□□□□ 0.32
CLN8-202ENST00000517514 CUX2O14529 1486 aa17.05■□□□□ 0.32
CLN8-202ENST00000517514 POLA1P09884 1462 aaPredicted RBP17.03■□□□□ 0.32
CLN8-202ENST00000517514 FGD5Q6ZNL6 1462 aa17.02■□□□□ 0.32
CLN8-202ENST00000517514 TARBP1Q13395 1621 aaKnown RBP16.99■□□□□ 0.31
CLN8-202ENST00000517514 RAD54L2Q9Y4B4 1467 aa16.96■□□□□ 0.31
CLN8-202ENST00000517514 WDR97A6NE52 1622 aa16.95■□□□□ 0.3
CLN8-202ENST00000517514 CHIC1Q5VXU3 224 aa16.93■□□□□ 0.3
CLN8-202ENST00000517514 SOGA1O94964 1423 aa16.92■□□□□ 0.3
CLN8-202ENST00000517514 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
CLN8-202ENST00000517514 ZNF608Q9ULD9 1512 aaPredicted RBP16.9■□□□□ 0.3
CLN8-202ENST00000517514 ABCA10Q8WWZ4 1543 aa16.87■□□□□ 0.29
CLN8-202ENST00000517514 TRIM41Q8WV44 630 aa16.84■□□□□ 0.29
CLN8-202ENST00000517514 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.28
CLN8-202ENST00000517514 ABCA5Q8WWZ7 1642 aa16.82■□□□□ 0.28
CLN8-202ENST00000517514 AQRO60306 1485 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLN8-202ENST00000517514 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
CLN8-202ENST00000517514 RUSC2Q8N2Y8 1516 aa16.75■□□□□ 0.27
CLN8-202ENST00000517514 PBRM1Q86U86 1689 aa16.75■□□□□ 0.27
CLN8-202ENST00000517514 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
CLN8-202ENST00000517514 GRIN2BQ13224 1484 aa16.68■□□□□ 0.26
CLN8-202ENST00000517514 KIF27Q86VH2 1401 aa16.68■□□□□ 0.26
CLN8-202ENST00000517514 ERICH3Q5RHP9 1530 aa16.66■□□□□ 0.26
CLN8-202ENST00000517514 SNAPC4Q5SXM2 1469 aa16.65■□□□□ 0.26
CLN8-202ENST00000517514 IGF1RP08069 1367 aa16.64■□□□□ 0.26
CLN8-202ENST00000517514 ADAMTS12P58397 1594 aa16.62■□□□□ 0.25
CLN8-202ENST00000517514 MAGI1Q96QZ7 1491 aaPredicted RBP16.61■□□□□ 0.25
CLN8-202ENST00000517514 CHD1O14646 1710 aa16.59■□□□□ 0.25
CLN8-202ENST00000517514 CUL7Q14999 1698 aa16.57■□□□□ 0.24
CLN8-202ENST00000517514 EEA1Q15075 1411 aa16.55■□□□□ 0.24
CLN8-202ENST00000517514 FHAD1B1AJZ9 1412 aa16.54■□□□□ 0.24
CLN8-202ENST00000517514 SYNJ2O15056 1496 aa16.54■□□□□ 0.24
CLN8-202ENST00000517514 FAM9AQ8IZU1 332 aaPredicted RBP16.52■□□□□ 0.24
CLN8-202ENST00000517514 PRXQ9BXM0 1461 aa16.52■□□□□ 0.23
CLN8-202ENST00000517514 CARMIL1Q5VZK9 1371 aa16.51■□□□□ 0.23
CLN8-202ENST00000517514 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
CLN8-202ENST00000517514 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
CLN8-202ENST00000517514 RAPGEF2Q9Y4G8 1499 aa16.45■□□□□ 0.22
CLN8-202ENST00000517514 CEP170Q5SW79 1584 aa16.45■□□□□ 0.22
CLN8-202ENST00000517514 KIF21BO75037 1637 aa16.45■□□□□ 0.22
CLN8-202ENST00000517514 FBLN2P98095 1184 aa16.44■□□□□ 0.22
CLN8-202ENST00000517514 CHMP7Q8WUX9 453 aaPredicted RBP16.44■□□□□ 0.22
CLN8-202ENST00000517514 NUP160Q12769 1436 aa16.43■□□□□ 0.22
CLN8-202ENST00000517514 CLASP1Q7Z460 1538 aa16.4■□□□□ 0.22
CLN8-202ENST00000517514 OSCARQ8IYS5 282 aa16.36■□□□□ 0.21
CLN8-202ENST00000517514 CTTNBP2Q8WZ74 1663 aa16.35■□□□□ 0.21
CLN8-202ENST00000517514 GOLGA3Q08378 1498 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms