RNA–Protein interactions for RNA: ENST00000517494.1

CSGALNACT1-204, Transcript of chondroitin sulfate N-acetylgalactosaminyltransferase 1, humanhuman

TSL 3

Gene CSGALNACT1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSGALNACT1-204ENST00000517494 NISCHQ9Y2I1 1504 aa38.28■■■■□ 3.72
CSGALNACT1-204ENST00000517494 ABCC9O60706 1549 aa34.74■■■■□ 3.15
CSGALNACT1-204ENST00000517494 CCDC180Q9P1Z9 1646 aa34.37■■■■□ 3.09
CSGALNACT1-204ENST00000517494 RB1CC1Q8TDY2 1594 aa32.88■■■□□ 2.85
CSGALNACT1-204ENST00000517494 DNAJC5BQ9UF47 199 aa32.71■■■□□ 2.83
CSGALNACT1-204ENST00000517494 DCAF8L2P0C7V8 631 aa32.61■■■□□ 2.81
CSGALNACT1-204ENST00000517494 NACADO15069 1562 aa32.58■■■□□ 2.81
CSGALNACT1-204ENST00000517494 PABPN1Q86U42 306 aaKnown RBP eCLIP32.35■■■□□ 2.77
CSGALNACT1-204ENST00000517494 UNC13AQ9UPW8 1703 aa32.05■■■□□ 2.72
CSGALNACT1-204ENST00000517494 MYO15BQ96JP2 1530 aa32■■■□□ 2.71
CSGALNACT1-204ENST00000517494 BICRAQ9NZM4 1560 aa31.9■■■□□ 2.7
CSGALNACT1-204ENST00000517494 ZCCHC6Q5VYS8 1495 aaKnown RBP31.69■■■□□ 2.66
CSGALNACT1-204ENST00000517494 DCAF1Q9Y4B6 1507 aa31.54■■■□□ 2.64
CSGALNACT1-204ENST00000517494 SCRIBQ14160 1630 aa31.46■■■□□ 2.63
CSGALNACT1-204ENST00000517494 SHROOM4Q9ULL8 1493 aa31.42■■■□□ 2.62
CSGALNACT1-204ENST00000517494 CC2D2AQ9P2K1 1620 aa31.29■■■□□ 2.6
CSGALNACT1-204ENST00000517494 CECR2Q9BXF3 1484 aa31.28■■■□□ 2.6
CSGALNACT1-204ENST00000517494 EIF4G1Q04637 1599 aaKnown RBP31.17■■■□□ 2.58
CSGALNACT1-204ENST00000517494 DNAJC5Q9H3Z4 198 aa30.15■■■□□ 2.42
CSGALNACT1-204ENST00000517494 NCAPD3P42695 1498 aa30.09■■■□□ 2.41
CSGALNACT1-204ENST00000517494 ERCC6Q03468 1493 aa30.03■■■□□ 2.4
CSGALNACT1-204ENST00000517494 ATAD2BQ9ULI0 1458 aa30■■■□□ 2.39
CSGALNACT1-204ENST00000517494 CUX2O14529 1486 aa29.93■■■□□ 2.38
CSGALNACT1-204ENST00000517494 SMARCA4P51532 1647 aa29.91■■■□□ 2.38
CSGALNACT1-204ENST00000517494 SMARCA2P51531 1590 aa29.9■■■□□ 2.38
CSGALNACT1-204ENST00000517494 HMGXB3Q12766 1538 aa29.85■■■□□ 2.37
CSGALNACT1-204ENST00000517494 BAZ1BQ9UIG0 1483 aaKnown RBP29.75■■■□□ 2.35
CSGALNACT1-204ENST00000517494 NESP48681 1621 aa29.75■■■□□ 2.35
CSGALNACT1-204ENST00000517494 BAZ1AQ9NRL2 1556 aaPredicted RBP29.74■■■□□ 2.35
CSGALNACT1-204ENST00000517494 PEG3Q9GZU2 1588 aa29.56■■■□□ 2.32
CSGALNACT1-204ENST00000517494 MROH2BQ7Z745 1585 aa29.53■■■□□ 2.32
CSGALNACT1-204ENST00000517494 LAMC3Q9Y6N6 1575 aa29.44■■■□□ 2.3
CSGALNACT1-204ENST00000517494 THOC2Q8NI27 1593 aaKnown RBP29.43■■■□□ 2.3
CSGALNACT1-204ENST00000517494 PDS5BQ9NTI5 1447 aa29.34■■■□□ 2.29
CSGALNACT1-204ENST00000517494 KIF21AQ7Z4S6 1674 aa29.3■■■□□ 2.28
CSGALNACT1-204ENST00000517494 CADPSQ9ULU8 1353 aa29.21■■■□□ 2.27
CSGALNACT1-204ENST00000517494 WIZO95785 1651 aa29.15■■■□□ 2.26
CSGALNACT1-204ENST00000517494 MRC2Q9UBG0 1479 aa29.1■■■□□ 2.25
CSGALNACT1-204ENST00000517494 WDR62O43379 1518 aa28.99■■■□□ 2.23
CSGALNACT1-204ENST00000517494 CEP164Q9UPV0 1460 aa28.96■■■□□ 2.23
CSGALNACT1-204ENST00000517494 TRIM41Q8WV44 630 aa28.91■■■□□ 2.22
CSGALNACT1-204ENST00000517494 FANCD2Q9BXW9 1451 aa28.91■■■□□ 2.22
CSGALNACT1-204ENST00000517494 RSF1Q96T23 1441 aaPredicted RBP28.85■■■□□ 2.21
CSGALNACT1-204ENST00000517494 CFTRP13569 1480 aa28.81■■■□□ 2.2
CSGALNACT1-204ENST00000517494 TOP2AP11388 1531 aaKnown RBP28.78■■■□□ 2.2
CSGALNACT1-204ENST00000517494 URB2Q14146 1524 aaKnown RBP28.66■■■□□ 2.18
CSGALNACT1-204ENST00000517494 OSCARQ8IYS5 282 aa28.59■■■□□ 2.17
CSGALNACT1-204ENST00000517494 CCDC88BA6NC98 1476 aa28.46■■■□□ 2.15
CSGALNACT1-204ENST00000517494 PRDM2Q13029 1718 aa28.41■■■□□ 2.14
CSGALNACT1-204ENST00000517494 IFT140Q96RY7 1462 aa28.37■■■□□ 2.13
CSGALNACT1-204ENST00000517494 ZNF608Q9ULD9 1512 aaPredicted RBP28.37■■■□□ 2.13
CSGALNACT1-204ENST00000517494 TOPBP1Q92547 1522 aa28.32■■■□□ 2.12
CSGALNACT1-204ENST00000517494 ABCC8Q09428 1581 aa28.2■■■□□ 2.11
CSGALNACT1-204ENST00000517494 RIMBP3CA6NJZ7 1639 aa28.2■■■□□ 2.1
CSGALNACT1-204ENST00000517494 RIMBP3BA6NNM3 1639 aa28.2■■■□□ 2.1
CSGALNACT1-204ENST00000517494 RIMBP3Q9UFD9 1639 aa28.2■■■□□ 2.1
CSGALNACT1-204ENST00000517494 DNMBPQ6XZF7 1577 aa28.18■■■□□ 2.1
CSGALNACT1-204ENST00000517494 EIF4G3O43432 1585 aaKnown RBP28.17■■■□□ 2.1
CSGALNACT1-204ENST00000517494 ARHGEF11O15085 1522 aa28.11■■■□□ 2.09
CSGALNACT1-204ENST00000517494 AQRO60306 1485 aaKnown RBP eCLIP28.09■■■□□ 2.09
CSGALNACT1-204ENST00000517494 FBLN2P98095 1184 aa28.05■■■□□ 2.08
CSGALNACT1-204ENST00000517494 TARBP1Q13395 1621 aaKnown RBP28.03■■■□□ 2.08
CSGALNACT1-204ENST00000517494 POLA1P09884 1462 aaPredicted RBP28.02■■■□□ 2.08
CSGALNACT1-204ENST00000517494 CYB5RLQ6IPT4 315 aa27.99■■■□□ 2.07
CSGALNACT1-204ENST00000517494 RAD54L2Q9Y4B4 1467 aa27.96■■■□□ 2.07
CSGALNACT1-204ENST00000517494 CHD1O14646 1710 aa27.96■■■□□ 2.07
CSGALNACT1-204ENST00000517494 SOGA1O94964 1423 aa27.92■■■□□ 2.06
CSGALNACT1-204ENST00000517494 TDRD9Q8NDG6 1382 aaKnown RBP27.91■■■□□ 2.06
CSGALNACT1-204ENST00000517494 FGD5Q6ZNL6 1462 aa27.83■■■□□ 2.05
CSGALNACT1-204ENST00000517494 ARAP1Q96P48 1450 aa27.83■■■□□ 2.04
CSGALNACT1-204ENST00000517494 SNAPC4Q5SXM2 1469 aa27.81■■■□□ 2.04
CSGALNACT1-204ENST00000517494 TRHP20396 242 aaPredicted RBP27.8■■■□□ 2.04
CSGALNACT1-204ENST00000517494 CUX1P39880 1505 aa27.76■■■□□ 2.03
CSGALNACT1-204ENST00000517494 CHMP7Q8WUX9 453 aaPredicted RBP27.75■■■□□ 2.03
CSGALNACT1-204ENST00000517494 WDR97A6NE52 1622 aa27.69■■■□□ 2.02
CSGALNACT1-204ENST00000517494 MAGI1Q96QZ7 1491 aaPredicted RBP27.68■■■□□ 2.02
CSGALNACT1-204ENST00000517494 GRIN2BQ13224 1484 aa27.67■■■□□ 2.02
CSGALNACT1-204ENST00000517494 SYNJ1O43426 1573 aa27.65■■■□□ 2.02
CSGALNACT1-204ENST00000517494 CLASP1Q7Z460 1538 aa27.64■■■□□ 2.02
CSGALNACT1-204ENST00000517494 SYNJ2O15056 1496 aa27.6■■■□□ 2.01
CSGALNACT1-204ENST00000517494 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
CSGALNACT1-204ENST00000517494 GAPVD1Q14C86 1478 aa27.56■■■□□ 2
CSGALNACT1-204ENST00000517494 PBRM1Q86U86 1689 aa27.5■■□□□ 1.99
CSGALNACT1-204ENST00000517494 ABCA10Q8WWZ4 1543 aa27.46■■□□□ 1.99
CSGALNACT1-204ENST00000517494 ABCA5Q8WWZ7 1642 aa27.42■■□□□ 1.98
CSGALNACT1-204ENST00000517494 WRNQ14191 1432 aaPredicted RBP eCLIP27.36■■□□□ 1.97
CSGALNACT1-204ENST00000517494 GRIN2AQ12879 1464 aa27.32■■□□□ 1.96
CSGALNACT1-204ENST00000517494 ADAMTS12P58397 1594 aa27.26■■□□□ 1.96
CSGALNACT1-204ENST00000517494 ERCC6L2Q5T890 1561 aa27.24■■□□□ 1.95
CSGALNACT1-204ENST00000517494 TOP2BQ02880 1626 aa27.22■■□□□ 1.95
CSGALNACT1-204ENST00000517494 CEP170Q5SW79 1584 aa27.22■■□□□ 1.95
CSGALNACT1-204ENST00000517494 BIVM-ERCC5R4GMW8 1640 aa27.2■■□□□ 1.95
CSGALNACT1-204ENST00000517494 NUP160Q12769 1436 aa27.2■■□□□ 1.94
CSGALNACT1-204ENST00000517494 FHAD1B1AJZ9 1412 aa27.19■■□□□ 1.94
CSGALNACT1-204ENST00000517494 AEBP2Q6ZN18 517 aaPredicted RBP27.13■■□□□ 1.93
CSGALNACT1-204ENST00000517494 ERICH3Q5RHP9 1530 aa27.11■■□□□ 1.93
CSGALNACT1-204ENST00000517494 SHROOM2Q13796 1616 aa27.06■■□□□ 1.92
CSGALNACT1-204ENST00000517494 PRG4Q92954 1404 aaPredicted RBP27.03■■□□□ 1.92
CSGALNACT1-204ENST00000517494 JPH4Q96JJ6 628 aa26.97■■□□□ 1.91
CSGALNACT1-204ENST00000517494 RUSC2Q8N2Y8 1516 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms