RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-222ENST00000515609 NISCHQ9Y2I1 1504 aa21.45■■□□□ 1.02
TPM3-222ENST00000515609 CCDC180Q9P1Z9 1646 aa18.82■□□□□ 0.6
TPM3-222ENST00000515609 ZCCHC6Q5VYS8 1495 aaKnown RBP17.99■□□□□ 0.47
TPM3-222ENST00000515609 DCAF1Q9Y4B6 1507 aa17.84■□□□□ 0.45
TPM3-222ENST00000515609 DCAF8L2P0C7V8 631 aa17.71■□□□□ 0.43
TPM3-222ENST00000515609 ABCC9O60706 1549 aa17.71■□□□□ 0.43
TPM3-222ENST00000515609 MYO15BQ96JP2 1530 aa17.71■□□□□ 0.43
TPM3-222ENST00000515609 NACADO15069 1562 aa17.57■□□□□ 0.4
TPM3-222ENST00000515609 RB1CC1Q8TDY2 1594 aa17.43■□□□□ 0.38
TPM3-222ENST00000515609 SHROOM4Q9ULL8 1493 aa17.28■□□□□ 0.36
TPM3-222ENST00000515609 SCRIBQ14160 1630 aa17.13■□□□□ 0.33
TPM3-222ENST00000515609 UNC13AQ9UPW8 1703 aa16.85■□□□□ 0.29
TPM3-222ENST00000515609 BICRAQ9NZM4 1560 aa16.72■□□□□ 0.27
TPM3-222ENST00000515609 SUPT5HO00267 1087 aaKnown RBP16.68■□□□□ 0.26
TPM3-222ENST00000515609 PABPN1Q86U42 306 aaKnown RBP eCLIP16.65■□□□□ 0.26
TPM3-222ENST00000515609 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
TPM3-222ENST00000515609 RSF1Q96T23 1441 aaPredicted RBP16.57■□□□□ 0.24
TPM3-222ENST00000515609 CECR2Q9BXF3 1484 aa16.54■□□□□ 0.24
TPM3-222ENST00000515609 SMARCA4P51532 1647 aa16.48■□□□□ 0.23
TPM3-222ENST00000515609 MROH2BQ7Z745 1585 aa16.47■□□□□ 0.23
TPM3-222ENST00000515609 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
TPM3-222ENST00000515609 PEG3Q9GZU2 1588 aa16.34■□□□□ 0.21
TPM3-222ENST00000515609 WIZO95785 1651 aa16.31■□□□□ 0.2
TPM3-222ENST00000515609 EIF4G1Q04637 1599 aaKnown RBP16.3■□□□□ 0.2
TPM3-222ENST00000515609 TOP2AP11388 1531 aaKnown RBP16.27■□□□□ 0.2
TPM3-222ENST00000515609 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
TPM3-222ENST00000515609 BAZ1BQ9UIG0 1483 aaKnown RBP16.2■□□□□ 0.18
TPM3-222ENST00000515609 NCAPD3P42695 1498 aa16.18■□□□□ 0.18
TPM3-222ENST00000515609 HMGXB3Q12766 1538 aa16.16■□□□□ 0.18
TPM3-222ENST00000515609 CC2D2AQ9P2K1 1620 aa16.05■□□□□ 0.16
TPM3-222ENST00000515609 CCDC88BA6NC98 1476 aa16.04■□□□□ 0.16
TPM3-222ENST00000515609 CHIC1Q5VXU3 224 aa15.93■□□□□ 0.14
TPM3-222ENST00000515609 TRIM41Q8WV44 630 aa15.81■□□□□ 0.12
TPM3-222ENST00000515609 CFTRP13569 1480 aa15.78■□□□□ 0.12
TPM3-222ENST00000515609 CADPSQ9ULU8 1353 aa15.75■□□□□ 0.11
TPM3-222ENST00000515609 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
TPM3-222ENST00000515609 LAMC3Q9Y6N6 1575 aa15.67■□□□□ 0.1
TPM3-222ENST00000515609 WRNQ14191 1432 aaPredicted RBP eCLIP15.67■□□□□ 0.1
TPM3-222ENST00000515609 PDS5BQ9NTI5 1447 aa15.6■□□□□ 0.09
TPM3-222ENST00000515609 ABCC8Q09428 1581 aa15.59■□□□□ 0.09
TPM3-222ENST00000515609 DNAJC5BQ9UF47 199 aa15.56■□□□□ 0.08
TPM3-222ENST00000515609 FANCD2Q9BXW9 1451 aa15.55■□□□□ 0.08
TPM3-222ENST00000515609 EEA1Q15075 1411 aa15.54■□□□□ 0.08
TPM3-222ENST00000515609 TOP2BQ02880 1626 aa15.53■□□□□ 0.08
TPM3-222ENST00000515609 CEP164Q9UPV0 1460 aa15.5■□□□□ 0.07
TPM3-222ENST00000515609 BIVM-ERCC5R4GMW8 1640 aa15.5■□□□□ 0.07
TPM3-222ENST00000515609 SYNJ1O43426 1573 aa15.48■□□□□ 0.07
TPM3-222ENST00000515609 NESP48681 1621 aa15.46■□□□□ 0.07
TPM3-222ENST00000515609 CUX1P39880 1505 aa15.43■□□□□ 0.06
TPM3-222ENST00000515609 DNMBPQ6XZF7 1577 aa15.41■□□□□ 0.06
TPM3-222ENST00000515609 FAM9AQ8IZU1 332 aaPredicted RBP15.36■□□□□ 0.05
TPM3-222ENST00000515609 TOPBP1Q92547 1522 aa15.35■□□□□ 0.05
TPM3-222ENST00000515609 CSRNP3Q8WYN3 585 aa15.35■□□□□ 0.05
TPM3-222ENST00000515609 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
TPM3-222ENST00000515609 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
TPM3-222ENST00000515609 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
TPM3-222ENST00000515609 FGD5Q6ZNL6 1462 aa15.32■□□□□ 0.04
TPM3-222ENST00000515609 SOGA1O94964 1423 aa15.31■□□□□ 0.04
TPM3-222ENST00000515609 KIF21AQ7Z4S6 1674 aa15.31■□□□□ 0.04
TPM3-222ENST00000515609 URB2Q14146 1524 aaKnown RBP15.28■□□□□ 0.04
TPM3-222ENST00000515609 POLA1P09884 1462 aaPredicted RBP15.26■□□□□ 0.03
TPM3-222ENST00000515609 ABCA10Q8WWZ4 1543 aa15.23■□□□□ 0.03
TPM3-222ENST00000515609 CUX2O14529 1486 aa15.22■□□□□ 0.03
TPM3-222ENST00000515609 LOC105371045A0A1W2PR82 267 aa15.22■□□□□ 0.03
TPM3-222ENST00000515609 WDR62O43379 1518 aa15.22■□□□□ 0.03
TPM3-222ENST00000515609 GOLGA3Q08378 1498 aa15.21■□□□□ 0.03
TPM3-222ENST00000515609 KIF21BO75037 1637 aa15.21■□□□□ 0.02
TPM3-222ENST00000515609 RUSC2Q8N2Y8 1516 aa15.19■□□□□ 0.02
TPM3-222ENST00000515609 ERICH3Q5RHP9 1530 aa15.17■□□□□ 0.02
TPM3-222ENST00000515609 WDR97A6NE52 1622 aa15.16■□□□□ 0.02
TPM3-222ENST00000515609 IFT140Q96RY7 1462 aa15.15■□□□□ 0.02
TPM3-222ENST00000515609 TNIKQ9UKE5 1360 aa15.15■□□□□ 0.02
TPM3-222ENST00000515609 UBTFP17480 764 aaKnown RBP15.15■□□□□ 0.02
TPM3-222ENST00000515609 RAD54L2Q9Y4B4 1467 aa15.14■□□□□ 0.01
TPM3-222ENST00000515609 PRXQ9BXM0 1461 aa15.13■□□□□ 0.01
TPM3-222ENST00000515609 IGF1RP08069 1367 aa15.11■□□□□ 0.01
TPM3-222ENST00000515609 THOC2Q8NI27 1593 aaKnown RBP15.11■□□□□ 0.01
TPM3-222ENST00000515609 TARBP1Q13395 1621 aaKnown RBP15.1■□□□□ 0.01
TPM3-222ENST00000515609 GAPVD1Q14C86 1478 aa15.09■□□□□ 0.01
TPM3-222ENST00000515609 CUL7Q14999 1698 aa15.09■□□□□ 0.01
TPM3-222ENST00000515609 CARMIL1Q5VZK9 1371 aa15.08■□□□□ 0
TPM3-222ENST00000515609 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
TPM3-222ENST00000515609 ABCA5Q8WWZ7 1642 aa15.06■□□□□ 0
TPM3-222ENST00000515609 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
TPM3-222ENST00000515609 EHMT2Q96KQ7 1210 aa15.04■□□□□ -0
TPM3-222ENST00000515609 GRIN2BQ13224 1484 aa15.02■□□□□ -0
TPM3-222ENST00000515609 CEP162Q5TB80 1403 aa15□□□□□ -0.01
TPM3-222ENST00000515609 FHAD1B1AJZ9 1412 aa14.97□□□□□ -0.01
TPM3-222ENST00000515609 PBRM1Q86U86 1689 aa14.94□□□□□ -0.02
TPM3-222ENST00000515609 CLIP1P30622 1438 aa14.94□□□□□ -0.02
TPM3-222ENST00000515609 AQRO60306 1485 aaKnown RBP eCLIP14.94□□□□□ -0.02
TPM3-222ENST00000515609 MAGI1Q96QZ7 1491 aaPredicted RBP14.93□□□□□ -0.02
TPM3-222ENST00000515609 EIF4G3O43432 1585 aaKnown RBP14.91□□□□□ -0.02
TPM3-222ENST00000515609 ZNF608Q9ULD9 1512 aaPredicted RBP14.9□□□□□ -0.02
TPM3-222ENST00000515609 ADAMTS12P58397 1594 aa14.88□□□□□ -0.03
TPM3-222ENST00000515609 CTTNBP2Q8WZ74 1663 aa14.84□□□□□ -0.03
TPM3-222ENST00000515609 SYNJ2O15056 1496 aa14.83□□□□□ -0.03
TPM3-222ENST00000515609 SNAPC4Q5SXM2 1469 aa14.83□□□□□ -0.03
TPM3-222ENST00000515609 CHMP7Q8WUX9 453 aaPredicted RBP14.83□□□□□ -0.04
TPM3-222ENST00000515609 EFCAB5A4FU69 1503 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms