RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 NISCHQ9Y2I1 1504 aa43.45■■■■■ 4.55
DDX41-217ENST00000515562 CCDC180Q9P1Z9 1646 aa38.96■■■■□ 3.83
DDX41-217ENST00000515562 ABCC9O60706 1549 aa38.53■■■■□ 3.76
DDX41-217ENST00000515562 RB1CC1Q8TDY2 1594 aa36.9■■■■□ 3.5
DDX41-217ENST00000515562 NACADO15069 1562 aa36.72■■■■□ 3.47
DDX41-217ENST00000515562 DCAF8L2P0C7V8 631 aa36.41■■■■□ 3.42
DDX41-217ENST00000515562 MYO15BQ96JP2 1530 aa36.34■■■■□ 3.41
DDX41-217ENST00000515562 ZCCHC6Q5VYS8 1495 aaKnown RBP36.11■■■■□ 3.37
DDX41-217ENST00000515562 UNC13AQ9UPW8 1703 aa36.03■■■■□ 3.36
DDX41-217ENST00000515562 DCAF1Q9Y4B6 1507 aa35.98■■■■□ 3.35
DDX41-217ENST00000515562 PABPN1Q86U42 306 aaKnown RBP eCLIP35.84■■■■□ 3.33
DDX41-217ENST00000515562 DNAJC5BQ9UF47 199 aa35.76■■■■□ 3.32
DDX41-217ENST00000515562 BICRAQ9NZM4 1560 aa35.76■■■■□ 3.31
DDX41-217ENST00000515562 SHROOM4Q9ULL8 1493 aa35.44■■■■□ 3.26
DDX41-217ENST00000515562 SCRIBQ14160 1630 aa35.43■■■■□ 3.26
DDX41-217ENST00000515562 EIF4G1Q04637 1599 aaKnown RBP34.88■■■■□ 3.17
DDX41-217ENST00000515562 CC2D2AQ9P2K1 1620 aa34.86■■■■□ 3.17
DDX41-217ENST00000515562 CECR2Q9BXF3 1484 aa34.71■■■■□ 3.15
DDX41-217ENST00000515562 SMARCA4P51532 1647 aa33.86■■■■□ 3.01
DDX41-217ENST00000515562 NCAPD3P42695 1498 aa33.85■■■■□ 3.01
DDX41-217ENST00000515562 ATAD2BQ9ULI0 1458 aa33.78■■■■□ 3
DDX41-217ENST00000515562 SMARCA2P51531 1590 aa33.77■■■■□ 3
DDX41-217ENST00000515562 BAZ1AQ9NRL2 1556 aaPredicted RBP33.76■■■□□ 2.99
DDX41-217ENST00000515562 HMGXB3Q12766 1538 aa33.69■■■□□ 2.98
DDX41-217ENST00000515562 PEG3Q9GZU2 1588 aa33.55■■■□□ 2.96
DDX41-217ENST00000515562 BAZ1BQ9UIG0 1483 aaKnown RBP33.5■■■□□ 2.95
DDX41-217ENST00000515562 MROH2BQ7Z745 1585 aa33.45■■■□□ 2.95
DDX41-217ENST00000515562 ERCC6Q03468 1493 aa33.3■■■□□ 2.92
DDX41-217ENST00000515562 CUX2O14529 1486 aa33.17■■■□□ 2.9
DDX41-217ENST00000515562 NESP48681 1621 aa33.17■■■□□ 2.9
DDX41-217ENST00000515562 LAMC3Q9Y6N6 1575 aa33.09■■■□□ 2.89
DDX41-217ENST00000515562 WIZO95785 1651 aa33.07■■■□□ 2.89
DDX41-217ENST00000515562 RSF1Q96T23 1441 aaPredicted RBP32.86■■■□□ 2.85
DDX41-217ENST00000515562 THOC2Q8NI27 1593 aaKnown RBP32.86■■■□□ 2.85
DDX41-217ENST00000515562 PDS5BQ9NTI5 1447 aa32.85■■■□□ 2.85
DDX41-217ENST00000515562 CADPSQ9ULU8 1353 aa32.82■■■□□ 2.84
DDX41-217ENST00000515562 KIF21AQ7Z4S6 1674 aa32.82■■■□□ 2.84
DDX41-217ENST00000515562 TOP2AP11388 1531 aaKnown RBP32.73■■■□□ 2.83
DDX41-217ENST00000515562 DNAJC5Q9H3Z4 198 aa32.7■■■□□ 2.83
DDX41-217ENST00000515562 MRC2Q9UBG0 1479 aa32.56■■■□□ 2.8
DDX41-217ENST00000515562 CFTRP13569 1480 aa32.53■■■□□ 2.8
DDX41-217ENST00000515562 CEP164Q9UPV0 1460 aa32.5■■■□□ 2.79
DDX41-217ENST00000515562 WDR62O43379 1518 aa32.49■■■□□ 2.79
DDX41-217ENST00000515562 FANCD2Q9BXW9 1451 aa32.46■■■□□ 2.79
DDX41-217ENST00000515562 PRDM2Q13029 1718 aa32.31■■■□□ 2.76
DDX41-217ENST00000515562 CCDC88BA6NC98 1476 aa32.29■■■□□ 2.76
DDX41-217ENST00000515562 URB2Q14146 1524 aaKnown RBP32.16■■■□□ 2.74
DDX41-217ENST00000515562 TOPBP1Q92547 1522 aa31.88■■■□□ 2.69
DDX41-217ENST00000515562 ABCC8Q09428 1581 aa31.88■■■□□ 2.69
DDX41-217ENST00000515562 IFT140Q96RY7 1462 aa31.84■■■□□ 2.69
DDX41-217ENST00000515562 DNMBPQ6XZF7 1577 aa31.83■■■□□ 2.69
DDX41-217ENST00000515562 ZNF608Q9ULD9 1512 aaPredicted RBP31.7■■■□□ 2.66
DDX41-217ENST00000515562 EIF4G3O43432 1585 aaKnown RBP31.61■■■□□ 2.65
DDX41-217ENST00000515562 OSCARQ8IYS5 282 aa31.61■■■□□ 2.65
DDX41-217ENST00000515562 TARBP1Q13395 1621 aaKnown RBP31.59■■■□□ 2.65
DDX41-217ENST00000515562 POLA1P09884 1462 aaPredicted RBP31.58■■■□□ 2.65
DDX41-217ENST00000515562 SUPT5HO00267 1087 aaKnown RBP31.55■■■□□ 2.64
DDX41-217ENST00000515562 CUX1P39880 1505 aa31.44■■■□□ 2.62
DDX41-217ENST00000515562 AQRO60306 1485 aaKnown RBP eCLIP31.42■■■□□ 2.626e-11■■■■■ 93.1
DDX41-217ENST00000515562 FGD5Q6ZNL6 1462 aa31.42■■■□□ 2.62
DDX41-217ENST00000515562 SOGA1O94964 1423 aa31.41■■■□□ 2.62
DDX41-217ENST00000515562 RAD54L2Q9Y4B4 1467 aa31.4■■■□□ 2.62
DDX41-217ENST00000515562 WDR97A6NE52 1622 aa31.38■■■□□ 2.61
DDX41-217ENST00000515562 TRIM41Q8WV44 630 aa31.36■■■□□ 2.61
DDX41-217ENST00000515562 CHD1O14646 1710 aa31.3■■■□□ 2.6
DDX41-217ENST00000515562 TDRD9Q8NDG6 1382 aaKnown RBP31.28■■■□□ 2.6
DDX41-217ENST00000515562 RIMBP3CA6NJZ7 1639 aa31.22■■■□□ 2.59
DDX41-217ENST00000515562 RIMBP3BA6NNM3 1639 aa31.22■■■□□ 2.59
DDX41-217ENST00000515562 RIMBP3Q9UFD9 1639 aa31.22■■■□□ 2.59
DDX41-217ENST00000515562 SNAPC4Q5SXM2 1469 aa31.17■■■□□ 2.58
DDX41-217ENST00000515562 ARHGEF11O15085 1522 aa31.16■■■□□ 2.58
DDX41-217ENST00000515562 GRIN2BQ13224 1484 aa31.14■■■□□ 2.58
DDX41-217ENST00000515562 MAGI1Q96QZ7 1491 aaPredicted RBP31.14■■■□□ 2.58
DDX41-217ENST00000515562 FBLN2P98095 1184 aa31.14■■■□□ 2.58
DDX41-217ENST00000515562 ABCA10Q8WWZ4 1543 aa31.1■■■□□ 2.57
DDX41-217ENST00000515562 PBRM1Q86U86 1689 aa31.07■■■□□ 2.56
DDX41-217ENST00000515562 BIVM-ERCC5R4GMW8 1640 aa31.06■■■□□ 2.56
DDX41-217ENST00000515562 GAPVD1Q14C86 1478 aa31.06■■■□□ 2.56
DDX41-217ENST00000515562 TOP2BQ02880 1626 aa31.05■■■□□ 2.56
DDX41-217ENST00000515562 ABCA5Q8WWZ7 1642 aa31.05■■■□□ 2.56
DDX41-217ENST00000515562 WRNQ14191 1432 aaPredicted RBP eCLIP31.04■■■□□ 2.56
DDX41-217ENST00000515562 SYNJ2O15056 1496 aa31.02■■■□□ 2.56
DDX41-217ENST00000515562 CHMP7Q8WUX9 453 aaPredicted RBP30.99■■■□□ 2.55
DDX41-217ENST00000515562 SYNJ1O43426 1573 aa30.99■■■□□ 2.55
DDX41-217ENST00000515562 CLASP1Q7Z460 1538 aa30.96■■■□□ 2.55
DDX41-217ENST00000515562 ARAP1Q96P48 1450 aa30.86■■■□□ 2.53
DDX41-217ENST00000515562 CYB5RLQ6IPT4 315 aa30.81■■■□□ 2.52
DDX41-217ENST00000515562 ADAMTS12P58397 1594 aa30.79■■■□□ 2.52
DDX41-217ENST00000515562 GRIN2AQ12879 1464 aa30.75■■■□□ 2.51
DDX41-217ENST00000515562 ERICH3Q5RHP9 1530 aa30.74■■■□□ 2.51
DDX41-217ENST00000515562 FHAD1B1AJZ9 1412 aa30.69■■■□□ 2.5
DDX41-217ENST00000515562 NUP160Q12769 1436 aa30.64■■■□□ 2.49
DDX41-217ENST00000515562 CEP170Q5SW79 1584 aa30.61■■■□□ 2.49
DDX41-217ENST00000515562 SHROOM2Q13796 1616 aa30.48■■■□□ 2.47
DDX41-217ENST00000515562 KIF27Q86VH2 1401 aa30.43■■■□□ 2.46
DDX41-217ENST00000515562 ERCC6L2Q5T890 1561 aa30.42■■■□□ 2.46
DDX41-217ENST00000515562 TRHP20396 242 aaPredicted RBP30.39■■■□□ 2.46
DDX41-217ENST00000515562 CUL7Q14999 1698 aa30.38■■■□□ 2.45
DDX41-217ENST00000515562 RUSC2Q8N2Y8 1516 aa30.37■■■□□ 2.45
DDX41-217ENST00000515562 IGF1RP08069 1367 aa30.32■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms