RNA–Protein interactions for RNA: ENST00000515546.1

HMGCLL1-209, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 4

Gene HMGCLL1, Length 569 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-209ENST00000515546 NISCHQ9Y2I1 1504 aa36.68■■■■□ 3.46
HMGCLL1-209ENST00000515546 CCDC180Q9P1Z9 1646 aa32.76■■■□□ 2.83
HMGCLL1-209ENST00000515546 ABCC9O60706 1549 aa32.16■■■□□ 2.74
HMGCLL1-209ENST00000515546 RB1CC1Q8TDY2 1594 aa30.89■■■□□ 2.54
HMGCLL1-209ENST00000515546 NACADO15069 1562 aa30.82■■■□□ 2.52
HMGCLL1-209ENST00000515546 MYO15BQ96JP2 1530 aa30.63■■■□□ 2.49
HMGCLL1-209ENST00000515546 ZCCHC6Q5VYS8 1495 aaKnown RBP30.55■■■□□ 2.48
HMGCLL1-209ENST00000515546 DCAF8L2P0C7V8 631 aa30.49■■■□□ 2.47
HMGCLL1-209ENST00000515546 DCAF1Q9Y4B6 1507 aa30.4■■■□□ 2.46
HMGCLL1-209ENST00000515546 UNC13AQ9UPW8 1703 aa30.19■■■□□ 2.42
HMGCLL1-209ENST00000515546 BICRAQ9NZM4 1560 aa30.01■■■□□ 2.39
HMGCLL1-209ENST00000515546 PABPN1Q86U42 306 aaKnown RBP eCLIP29.95■■■□□ 2.39
HMGCLL1-209ENST00000515546 SCRIBQ14160 1630 aa29.8■■■□□ 2.36
HMGCLL1-209ENST00000515546 SHROOM4Q9ULL8 1493 aa29.73■■■□□ 2.35
HMGCLL1-209ENST00000515546 DNAJC5BQ9UF47 199 aa29.71■■■□□ 2.35
HMGCLL1-209ENST00000515546 EIF4G1Q04637 1599 aaKnown RBP29.21■■■□□ 2.27
HMGCLL1-209ENST00000515546 CC2D2AQ9P2K1 1620 aa29.12■■■□□ 2.25
HMGCLL1-209ENST00000515546 CECR2Q9BXF3 1484 aa28.95■■■□□ 2.22
HMGCLL1-209ENST00000515546 SMARCA4P51532 1647 aa28.52■■■□□ 2.16
HMGCLL1-209ENST00000515546 BAZ1AQ9NRL2 1556 aaPredicted RBP28.45■■■□□ 2.14
HMGCLL1-209ENST00000515546 NCAPD3P42695 1498 aa28.44■■■□□ 2.14
HMGCLL1-209ENST00000515546 ATAD2BQ9ULI0 1458 aa28.4■■■□□ 2.14
HMGCLL1-209ENST00000515546 SMARCA2P51531 1590 aa28.37■■■□□ 2.13
HMGCLL1-209ENST00000515546 HMGXB3Q12766 1538 aa28.31■■■□□ 2.12
HMGCLL1-209ENST00000515546 PEG3Q9GZU2 1588 aa28.3■■■□□ 2.12
HMGCLL1-209ENST00000515546 MROH2BQ7Z745 1585 aa28.24■■■□□ 2.11
HMGCLL1-209ENST00000515546 BAZ1BQ9UIG0 1483 aaKnown RBP28.14■■■□□ 2.09
HMGCLL1-209ENST00000515546 WIZO95785 1651 aa27.91■■■□□ 2.06
HMGCLL1-209ENST00000515546 RSF1Q96T23 1441 aaPredicted RBP27.84■■■□□ 2.05
HMGCLL1-209ENST00000515546 NESP48681 1621 aa27.78■■■□□ 2.04
HMGCLL1-209ENST00000515546 ERCC6Q03468 1493 aa27.72■■■□□ 2.03
HMGCLL1-209ENST00000515546 LAMC3Q9Y6N6 1575 aa27.72■■■□□ 2.03
HMGCLL1-209ENST00000515546 TOP2AP11388 1531 aaKnown RBP27.66■■■□□ 2.02
HMGCLL1-209ENST00000515546 CUX2O14529 1486 aa27.59■■■□□ 2.01
HMGCLL1-209ENST00000515546 CADPSQ9ULU8 1353 aa27.55■■■□□ 2
HMGCLL1-209ENST00000515546 PDS5BQ9NTI5 1447 aa27.5■■□□□ 1.99
HMGCLL1-209ENST00000515546 THOC2Q8NI27 1593 aaKnown RBP27.49■■□□□ 1.99
HMGCLL1-209ENST00000515546 KIF21AQ7Z4S6 1674 aa27.46■■□□□ 1.99
HMGCLL1-209ENST00000515546 CFTRP13569 1480 aa27.38■■□□□ 1.97
HMGCLL1-209ENST00000515546 CCDC88BA6NC98 1476 aa27.28■■□□□ 1.96
HMGCLL1-209ENST00000515546 MRC2Q9UBG0 1479 aa27.27■■□□□ 1.96
HMGCLL1-209ENST00000515546 FANCD2Q9BXW9 1451 aa27.25■■□□□ 1.95
HMGCLL1-209ENST00000515546 CEP164Q9UPV0 1460 aa27.25■■□□□ 1.95
HMGCLL1-209ENST00000515546 WDR62O43379 1518 aa27.22■■□□□ 1.95
HMGCLL1-209ENST00000515546 PRDM2Q13029 1718 aa27.16■■□□□ 1.94
HMGCLL1-209ENST00000515546 URB2Q14146 1524 aaKnown RBP27.01■■□□□ 1.91
HMGCLL1-209ENST00000515546 DNAJC5Q9H3Z4 198 aa26.94■■□□□ 1.9
HMGCLL1-209ENST00000515546 TOPBP1Q92547 1522 aa26.8■■□□□ 1.88
HMGCLL1-209ENST00000515546 SUPT5HO00267 1087 aaKnown RBP26.79■■□□□ 1.88
HMGCLL1-209ENST00000515546 ABCC8Q09428 1581 aa26.77■■□□□ 1.88
HMGCLL1-209ENST00000515546 DNMBPQ6XZF7 1577 aa26.77■■□□□ 1.88
HMGCLL1-209ENST00000515546 IFT140Q96RY7 1462 aa26.69■■□□□ 1.86
HMGCLL1-209ENST00000515546 ZNF608Q9ULD9 1512 aaPredicted RBP26.58■■□□□ 1.85
HMGCLL1-209ENST00000515546 POLA1P09884 1462 aaPredicted RBP26.56■■□□□ 1.84
HMGCLL1-209ENST00000515546 TARBP1Q13395 1621 aaKnown RBP26.56■■□□□ 1.84
HMGCLL1-209ENST00000515546 CUX1P39880 1505 aa26.53■■□□□ 1.84
HMGCLL1-209ENST00000515546 EIF4G3O43432 1585 aaKnown RBP26.5■■□□□ 1.83
HMGCLL1-209ENST00000515546 FGD5Q6ZNL6 1462 aa26.45■■□□□ 1.82
HMGCLL1-209ENST00000515546 RAD54L2Q9Y4B4 1467 aa26.41■■□□□ 1.82
HMGCLL1-209ENST00000515546 SOGA1O94964 1423 aa26.39■■□□□ 1.82
HMGCLL1-209ENST00000515546 WDR97A6NE52 1622 aa26.37■■□□□ 1.81
HMGCLL1-209ENST00000515546 AQRO60306 1485 aaKnown RBP eCLIP26.36■■□□□ 1.81
HMGCLL1-209ENST00000515546 OSCARQ8IYS5 282 aa26.29■■□□□ 1.8
HMGCLL1-209ENST00000515546 TDRD9Q8NDG6 1382 aaKnown RBP26.26■■□□□ 1.79
HMGCLL1-209ENST00000515546 BIVM-ERCC5R4GMW8 1640 aa26.25■■□□□ 1.79
HMGCLL1-209ENST00000515546 TOP2BQ02880 1626 aa26.25■■□□□ 1.79
HMGCLL1-209ENST00000515546 WRNQ14191 1432 aaPredicted RBP eCLIP26.23■■□□□ 1.79
HMGCLL1-209ENST00000515546 SYNJ1O43426 1573 aa26.23■■□□□ 1.79
HMGCLL1-209ENST00000515546 ABCA10Q8WWZ4 1543 aa26.21■■□□□ 1.79
HMGCLL1-209ENST00000515546 CHD1O14646 1710 aa26.17■■□□□ 1.78
HMGCLL1-209ENST00000515546 ABCA5Q8WWZ7 1642 aa26.16■■□□□ 1.78
HMGCLL1-209ENST00000515546 GRIN2BQ13224 1484 aa26.16■■□□□ 1.78
HMGCLL1-209ENST00000515546 SNAPC4Q5SXM2 1469 aa26.15■■□□□ 1.78
HMGCLL1-209ENST00000515546 MAGI1Q96QZ7 1491 aaPredicted RBP26.13■■□□□ 1.77
HMGCLL1-209ENST00000515546 GAPVD1Q14C86 1478 aa26.11■■□□□ 1.77
HMGCLL1-209ENST00000515546 PBRM1Q86U86 1689 aa26.09■■□□□ 1.77
HMGCLL1-209ENST00000515546 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
HMGCLL1-209ENST00000515546 RIMBP3CA6NJZ7 1639 aa25.99■■□□□ 1.75
HMGCLL1-209ENST00000515546 RIMBP3BA6NNM3 1639 aa25.99■■□□□ 1.75
HMGCLL1-209ENST00000515546 RIMBP3Q9UFD9 1639 aa25.99■■□□□ 1.75
HMGCLL1-209ENST00000515546 FBLN2P98095 1184 aa25.98■■□□□ 1.75
HMGCLL1-209ENST00000515546 ARHGEF11O15085 1522 aa25.97■■□□□ 1.75
HMGCLL1-209ENST00000515546 CLASP1Q7Z460 1538 aa25.95■■□□□ 1.74
HMGCLL1-209ENST00000515546 ADAMTS12P58397 1594 aa25.92■■□□□ 1.74
HMGCLL1-209ENST00000515546 CHMP7Q8WUX9 453 aaPredicted RBP25.92■■□□□ 1.74
HMGCLL1-209ENST00000515546 ERICH3Q5RHP9 1530 aa25.89■■□□□ 1.74
HMGCLL1-209ENST00000515546 TRIM41Q8WV44 630 aa25.85■■□□□ 1.73
HMGCLL1-209ENST00000515546 GRIN2AQ12879 1464 aa25.83■■□□□ 1.73
HMGCLL1-209ENST00000515546 FHAD1B1AJZ9 1412 aa25.81■■□□□ 1.72
HMGCLL1-209ENST00000515546 ARAP1Q96P48 1450 aa25.75■■□□□ 1.71
HMGCLL1-209ENST00000515546 NUP160Q12769 1436 aa25.75■■□□□ 1.71
HMGCLL1-209ENST00000515546 CEP170Q5SW79 1584 aa25.73■■□□□ 1.71
HMGCLL1-209ENST00000515546 KIF27Q86VH2 1401 aa25.7■■□□□ 1.7
HMGCLL1-209ENST00000515546 IGF1RP08069 1367 aa25.62■■□□□ 1.69
HMGCLL1-209ENST00000515546 CUL7Q14999 1698 aa25.61■■□□□ 1.69
HMGCLL1-209ENST00000515546 CYB5RLQ6IPT4 315 aa25.61■■□□□ 1.69
HMGCLL1-209ENST00000515546 SHROOM2Q13796 1616 aa25.6■■□□□ 1.69
HMGCLL1-209ENST00000515546 RUSC2Q8N2Y8 1516 aa25.55■■□□□ 1.68
HMGCLL1-209ENST00000515546 ERCC6L2Q5T890 1561 aa25.52■■□□□ 1.68
HMGCLL1-209ENST00000515546 CARMIL1Q5VZK9 1371 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms