RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 NISCHQ9Y2I1 1504 aa34.99■■■■□ 3.19
SMAD1-216ENST00000515527 ABCC9O60706 1549 aa33.69■■■□□ 2.98
SMAD1-216ENST00000515527 DNAJC5BQ9UF47 199 aa32.94■■■□□ 2.86
SMAD1-216ENST00000515527 CCDC180Q9P1Z9 1646 aa32.08■■■□□ 2.73
SMAD1-216ENST00000515527 DNAJC5Q9H3Z4 198 aa31.4■■■□□ 2.62
SMAD1-216ENST00000515527 RB1CC1Q8TDY2 1594 aa31.33■■■□□ 2.61
SMAD1-216ENST00000515527 PABPN1Q86U42 306 aaKnown RBP eCLIP31.13■■■□□ 2.57
SMAD1-216ENST00000515527 NACADO15069 1562 aa30.7■■■□□ 2.5
SMAD1-216ENST00000515527 UNC13AQ9UPW8 1703 aa30.63■■■□□ 2.49
SMAD1-216ENST00000515527 CECR2Q9BXF3 1484 aa30.48■■■□□ 2.47
SMAD1-216ENST00000515527 BICRAQ9NZM4 1560 aa30.43■■■□□ 2.46
SMAD1-216ENST00000515527 DCAF8L2P0C7V8 631 aa30.39■■■□□ 2.46
SMAD1-216ENST00000515527 CC2D2AQ9P2K1 1620 aa30.32■■■□□ 2.44
SMAD1-216ENST00000515527 EIF4G1Q04637 1599 aaKnown RBP29.85■■■□□ 2.37
SMAD1-216ENST00000515527 SHROOM4Q9ULL8 1493 aa29.82■■■□□ 2.36
SMAD1-216ENST00000515527 MYO15BQ96JP2 1530 aa29.69■■■□□ 2.34
SMAD1-216ENST00000515527 CUX2O14529 1486 aa29.62■■■□□ 2.33
SMAD1-216ENST00000515527 TRIM41Q8WV44 630 aa29.5■■■□□ 2.31
SMAD1-216ENST00000515527 ERCC6Q03468 1493 aa29.23■■■□□ 2.27
SMAD1-216ENST00000515527 SCRIBQ14160 1630 aa29.2■■■□□ 2.27
SMAD1-216ENST00000515527 DCAF1Q9Y4B6 1507 aa28.74■■■□□ 2.19
SMAD1-216ENST00000515527 ZCCHC6Q5VYS8 1495 aaKnown RBP28.64■■■□□ 2.17
SMAD1-216ENST00000515527 NESP48681 1621 aa28.47■■■□□ 2.15
SMAD1-216ENST00000515527 THOC2Q8NI27 1593 aaKnown RBP28.45■■■□□ 2.15
SMAD1-216ENST00000515527 NCAPD3P42695 1498 aa28.34■■■□□ 2.13
SMAD1-216ENST00000515527 SMARCA2P51531 1590 aa28.24■■■□□ 2.11
SMAD1-216ENST00000515527 AEBP2Q6ZN18 517 aaPredicted RBP28.18■■■□□ 2.1
SMAD1-216ENST00000515527 BAZ1AQ9NRL2 1556 aaPredicted RBP28.07■■■□□ 2.08
SMAD1-216ENST00000515527 OSCARQ8IYS5 282 aa28.06■■■□□ 2.08
SMAD1-216ENST00000515527 ATAD2BQ9ULI0 1458 aa28.06■■■□□ 2.08
SMAD1-216ENST00000515527 KIF21AQ7Z4S6 1674 aa28.06■■■□□ 2.08
SMAD1-216ENST00000515527 HMGXB3Q12766 1538 aa28■■■□□ 2.07
SMAD1-216ENST00000515527 LAMC3Q9Y6N6 1575 aa27.99■■■□□ 2.07
SMAD1-216ENST00000515527 PDS5BQ9NTI5 1447 aa27.91■■■□□ 2.06
SMAD1-216ENST00000515527 RIMBP3CA6NJZ7 1639 aa27.86■■■□□ 2.05
SMAD1-216ENST00000515527 RIMBP3BA6NNM3 1639 aa27.86■■■□□ 2.05
SMAD1-216ENST00000515527 RIMBP3Q9UFD9 1639 aa27.86■■■□□ 2.05
SMAD1-216ENST00000515527 TRHP20396 242 aaPredicted RBP27.81■■■□□ 2.04
SMAD1-216ENST00000515527 MRC2Q9UBG0 1479 aa27.75■■■□□ 2.03
SMAD1-216ENST00000515527 BAZ1BQ9UIG0 1483 aaKnown RBP27.75■■■□□ 2.03
SMAD1-216ENST00000515527 WDR62O43379 1518 aa27.7■■■□□ 2.02
SMAD1-216ENST00000515527 SMARCA4P51532 1647 aa27.65■■■□□ 2.02
SMAD1-216ENST00000515527 ARHGEF11O15085 1522 aa27.59■■■□□ 2.01
SMAD1-216ENST00000515527 CYB5RLQ6IPT4 315 aa27.55■■■□□ 2
SMAD1-216ENST00000515527 CADPSQ9ULU8 1353 aa27.44■■□□□ 1.98
SMAD1-216ENST00000515527 CEP164Q9UPV0 1460 aa27.34■■□□□ 1.97
SMAD1-216ENST00000515527 PEG3Q9GZU2 1588 aa27.32■■□□□ 1.96
SMAD1-216ENST00000515527 ARAP1Q96P48 1450 aa27.2■■□□□ 1.95
SMAD1-216ENST00000515527 ILDR1Q86SU0 546 aaPredicted RBP27.18■■□□□ 1.94
SMAD1-216ENST00000515527 FANCD2Q9BXW9 1451 aa27.16■■□□□ 1.94
SMAD1-216ENST00000515527 URB2Q14146 1524 aaKnown RBP27.01■■□□□ 1.91
SMAD1-216ENST00000515527 MROH2BQ7Z745 1585 aa26.96■■□□□ 1.91
SMAD1-216ENST00000515527 ZNF608Q9ULD9 1512 aaPredicted RBP26.95■■□□□ 1.91
SMAD1-216ENST00000515527 RSF1Q96T23 1441 aaPredicted RBP26.89■■□□□ 1.89
SMAD1-216ENST00000515527 CHD1O14646 1710 aa26.86■■□□□ 1.89
SMAD1-216ENST00000515527 IFT140Q96RY7 1462 aa26.83■■□□□ 1.89
SMAD1-216ENST00000515527 CFTRP13569 1480 aa26.78■■□□□ 1.88
SMAD1-216ENST00000515527 FBLN2P98095 1184 aa26.77■■□□□ 1.88
SMAD1-216ENST00000515527 EIF4G3O43432 1585 aaKnown RBP26.73■■□□□ 1.87
SMAD1-216ENST00000515527 WIZO95785 1651 aa26.59■■□□□ 1.85
SMAD1-216ENST00000515527 AQRO60306 1485 aaKnown RBP eCLIP26.53■■□□□ 1.84
SMAD1-216ENST00000515527 TOPBP1Q92547 1522 aa26.45■■□□□ 1.83
SMAD1-216ENST00000515527 CLASP1Q7Z460 1538 aa26.44■■□□□ 1.82
SMAD1-216ENST00000515527 PRDM2Q13029 1718 aa26.42■■□□□ 1.82
SMAD1-216ENST00000515527 GAPVD1Q14C86 1478 aa26.34■■□□□ 1.81
SMAD1-216ENST00000515527 SYNJ1O43426 1573 aa26.33■■□□□ 1.81
SMAD1-216ENST00000515527 KDM4FA0A1W2PPD8 638 aa26.33■■□□□ 1.81
SMAD1-216ENST00000515527 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
SMAD1-216ENST00000515527 ABCC8Q09428 1581 aa26.28■■□□□ 1.8
SMAD1-216ENST00000515527 CHMP7Q8WUX9 453 aaPredicted RBP26.26■■□□□ 1.79
SMAD1-216ENST00000515527 DNMBPQ6XZF7 1577 aa26.22■■□□□ 1.79
SMAD1-216ENST00000515527 SNAPC4Q5SXM2 1469 aa26.21■■□□□ 1.79
SMAD1-216ENST00000515527 KIF13AQ9H1H9 1805 aa26.18■■□□□ 1.78
SMAD1-216ENST00000515527 TDRD9Q8NDG6 1382 aaKnown RBP26.13■■□□□ 1.77
SMAD1-216ENST00000515527 TOP2AP11388 1531 aaKnown RBP26.11■■□□□ 1.77
SMAD1-216ENST00000515527 POLA1P09884 1462 aaPredicted RBP26.08■■□□□ 1.77
SMAD1-216ENST00000515527 MAGI1Q96QZ7 1491 aaPredicted RBP26.04■■□□□ 1.76
SMAD1-216ENST00000515527 RAD54L2Q9Y4B4 1467 aa26.04■■□□□ 1.76
SMAD1-216ENST00000515527 ERCC6L2Q5T890 1561 aa26.01■■□□□ 1.75
SMAD1-216ENST00000515527 SYNJ2O15056 1496 aa25.99■■□□□ 1.75
SMAD1-216ENST00000515527 SOGA1O94964 1423 aa25.96■■□□□ 1.75
SMAD1-216ENST00000515527 FBXO41Q8TF61 875 aa25.95■■□□□ 1.74
SMAD1-216ENST00000515527 KDM6BO15054 1643 aa25.92■■□□□ 1.74
SMAD1-216ENST00000515527 HECW2Q9P2P5 1572 aa25.92■■□□□ 1.74
SMAD1-216ENST00000515527 WDR97A6NE52 1622 aa25.92■■□□□ 1.74
SMAD1-216ENST00000515527 FAM69CQ0P6D2 419 aa25.91■■□□□ 1.74
SMAD1-216ENST00000515527 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
SMAD1-216ENST00000515527 CCDC88BA6NC98 1476 aa25.84■■□□□ 1.73
SMAD1-216ENST00000515527 ABCC10Q5T3U5 1492 aa25.79■■□□□ 1.72
SMAD1-216ENST00000515527 LMTK3Q96Q04 1460 aa25.79■■□□□ 1.72
SMAD1-216ENST00000515527 ADGRL1O94910 1474 aa25.76■■□□□ 1.71
SMAD1-216ENST00000515527 CEP170Q5SW79 1584 aa25.75■■□□□ 1.71
SMAD1-216ENST00000515527 PBRM1Q86U86 1689 aa25.71■■□□□ 1.71
SMAD1-216ENST00000515527 FGD5Q6ZNL6 1462 aa25.71■■□□□ 1.71
SMAD1-216ENST00000515527 TSPOAP1O95153 1857 aa25.7■■□□□ 1.7
SMAD1-216ENST00000515527 DIP2BQ9P265 1576 aa25.69■■□□□ 1.7
SMAD1-216ENST00000515527 NPM1P06748 294 aaKnown RBP eCLIP25.64■■□□□ 1.7
SMAD1-216ENST00000515527 MAPKBP1O60336 1514 aa25.58■■□□□ 1.69
SMAD1-216ENST00000515527 SOCS7O14512 581 aa25.58■■□□□ 1.69
SMAD1-216ENST00000515527 SHROOM2Q13796 1616 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms