RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 NISCHQ9Y2I1 1504 aa33.56■■■□□ 2.96
TCOF1-215ENST00000515516 CCDC180Q9P1Z9 1646 aa29.92■■■□□ 2.38
TCOF1-215ENST00000515516 ABCC9O60706 1549 aa29.8■■■□□ 2.36
TCOF1-215ENST00000515516 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.14
TCOF1-215ENST00000515516 DCAF8L2P0C7V8 631 aa28.43■■■□□ 2.14
TCOF1-215ENST00000515516 NACADO15069 1562 aa28.32■■■□□ 2.12
TCOF1-215ENST00000515516 MYO15BQ96JP2 1530 aa27.99■■■□□ 2.07
TCOF1-215ENST00000515516 PABPN1Q86U42 306 aaKnown RBP eCLIP27.86■■■□□ 2.05
TCOF1-215ENST00000515516 ZCCHC6Q5VYS8 1495 aaKnown RBP27.84■■■□□ 2.05
TCOF1-215ENST00000515516 DCAF1Q9Y4B6 1507 aa27.72■■■□□ 2.03
TCOF1-215ENST00000515516 DNAJC5BQ9UF47 199 aa27.72■■■□□ 2.03
TCOF1-215ENST00000515516 UNC13AQ9UPW8 1703 aa27.59■■■□□ 2.01
TCOF1-215ENST00000515516 BICRAQ9NZM4 1560 aa27.52■■■□□ 2
TCOF1-215ENST00000515516 SCRIBQ14160 1630 aa27.34■■□□□ 1.97
TCOF1-215ENST00000515516 SHROOM4Q9ULL8 1493 aa27.27■■□□□ 1.96
TCOF1-215ENST00000515516 EIF4G1Q04637 1599 aaKnown RBP26.88■■□□□ 1.89
TCOF1-215ENST00000515516 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
TCOF1-215ENST00000515516 CECR2Q9BXF3 1484 aa26.83■■□□□ 1.89
TCOF1-215ENST00000515516 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
TCOF1-215ENST00000515516 ATAD2BQ9ULI0 1458 aa26.11■■□□□ 1.77
TCOF1-215ENST00000515516 SMARCA4P51532 1647 aa26.08■■□□□ 1.77
TCOF1-215ENST00000515516 SMARCA2P51531 1590 aa26.05■■□□□ 1.76
TCOF1-215ENST00000515516 BAZ1AQ9NRL2 1556 aaPredicted RBP26.04■■□□□ 1.76
TCOF1-215ENST00000515516 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
TCOF1-215ENST00000515516 BAZ1BQ9UIG0 1483 aaKnown RBP25.89■■□□□ 1.73
TCOF1-215ENST00000515516 MROH2BQ7Z745 1585 aa25.84■■□□□ 1.73
TCOF1-215ENST00000515516 PEG3Q9GZU2 1588 aa25.82■■□□□ 1.72
TCOF1-215ENST00000515516 ERCC6Q03468 1493 aa25.78■■□□□ 1.72
TCOF1-215ENST00000515516 NESP48681 1621 aa25.63■■□□□ 1.69
TCOF1-215ENST00000515516 CUX2O14529 1486 aa25.59■■□□□ 1.69
TCOF1-215ENST00000515516 WIZO95785 1651 aa25.5■■□□□ 1.67
TCOF1-215ENST00000515516 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
TCOF1-215ENST00000515516 RSF1Q96T23 1441 aaPredicted RBP25.45■■□□□ 1.66
TCOF1-215ENST00000515516 PDS5BQ9NTI5 1447 aa25.45■■□□□ 1.66
TCOF1-215ENST00000515516 CADPSQ9ULU8 1353 aa25.43■■□□□ 1.66
TCOF1-215ENST00000515516 DNAJC5Q9H3Z4 198 aa25.34■■□□□ 1.65
TCOF1-215ENST00000515516 TOP2AP11388 1531 aaKnown RBP25.25■■□□□ 1.63
TCOF1-215ENST00000515516 THOC2Q8NI27 1593 aaKnown RBP25.24■■□□□ 1.63
TCOF1-215ENST00000515516 KIF21AQ7Z4S6 1674 aa25.2■■□□□ 1.63
TCOF1-215ENST00000515516 MRC2Q9UBG0 1479 aa25.15■■□□□ 1.62
TCOF1-215ENST00000515516 CFTRP13569 1480 aa25.14■■□□□ 1.61
TCOF1-215ENST00000515516 CEP164Q9UPV0 1460 aa25.11■■□□□ 1.61
TCOF1-215ENST00000515516 FANCD2Q9BXW9 1451 aa25.1■■□□□ 1.61
TCOF1-215ENST00000515516 WDR62O43379 1518 aa25.02■■□□□ 1.6
TCOF1-215ENST00000515516 CCDC88BA6NC98 1476 aa25■■□□□ 1.59
TCOF1-215ENST00000515516 URB2Q14146 1524 aaKnown RBP24.82■■□□□ 1.56
TCOF1-215ENST00000515516 PRDM2Q13029 1718 aa24.72■■□□□ 1.55
TCOF1-215ENST00000515516 ABCC8Q09428 1581 aa24.65■■□□□ 1.54
TCOF1-215ENST00000515516 SUPT5HO00267 1087 aaKnown RBP24.64■■□□□ 1.54
TCOF1-215ENST00000515516 TOPBP1Q92547 1522 aa24.62■■□□□ 1.53
TCOF1-215ENST00000515516 IFT140Q96RY7 1462 aa24.61■■□□□ 1.53
TCOF1-215ENST00000515516 OSCARQ8IYS5 282 aa24.57■■□□□ 1.52
TCOF1-215ENST00000515516 DNMBPQ6XZF7 1577 aa24.54■■□□□ 1.52
TCOF1-215ENST00000515516 ZNF608Q9ULD9 1512 aaPredicted RBP24.49■■□□□ 1.51
TCOF1-215ENST00000515516 TRIM41Q8WV44 630 aa24.4■■□□□ 1.5
TCOF1-215ENST00000515516 POLA1P09884 1462 aaPredicted RBP24.38■■□□□ 1.49
TCOF1-215ENST00000515516 SOGA1O94964 1423 aa24.36■■□□□ 1.49
TCOF1-215ENST00000515516 AQRO60306 1485 aaKnown RBP eCLIP24.35■■□□□ 1.495e-7■■■■■ 40.3
TCOF1-215ENST00000515516 EIF4G3O43432 1585 aaKnown RBP24.32■■□□□ 1.48
TCOF1-215ENST00000515516 TARBP1Q13395 1621 aaKnown RBP24.32■■□□□ 1.48
TCOF1-215ENST00000515516 RAD54L2Q9Y4B4 1467 aa24.31■■□□□ 1.48
TCOF1-215ENST00000515516 FGD5Q6ZNL6 1462 aa24.28■■□□□ 1.48
TCOF1-215ENST00000515516 TDRD9Q8NDG6 1382 aaKnown RBP24.27■■□□□ 1.48
TCOF1-215ENST00000515516 CUX1P39880 1505 aa24.26■■□□□ 1.47
TCOF1-215ENST00000515516 FBLN2P98095 1184 aa24.26■■□□□ 1.47
TCOF1-215ENST00000515516 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
TCOF1-215ENST00000515516 CHMP7Q8WUX9 453 aaPredicted RBP24.12■■□□□ 1.45
TCOF1-215ENST00000515516 GRIN2BQ13224 1484 aa24.09■■□□□ 1.45
TCOF1-215ENST00000515516 SNAPC4Q5SXM2 1469 aa24.09■■□□□ 1.45
TCOF1-215ENST00000515516 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
TCOF1-215ENST00000515516 WRNQ14191 1432 aaPredicted RBP eCLIP24.04■■□□□ 1.44
TCOF1-215ENST00000515516 RIMBP3CA6NJZ7 1639 aa24.04■■□□□ 1.44
TCOF1-215ENST00000515516 RIMBP3BA6NNM3 1639 aa24.04■■□□□ 1.44
TCOF1-215ENST00000515516 RIMBP3Q9UFD9 1639 aa24.04■■□□□ 1.44
TCOF1-215ENST00000515516 ARHGEF11O15085 1522 aa24.04■■□□□ 1.44
TCOF1-215ENST00000515516 CHD1O14646 1710 aa24.04■■□□□ 1.44
TCOF1-215ENST00000515516 GAPVD1Q14C86 1478 aa24.03■■□□□ 1.44
TCOF1-215ENST00000515516 ABCA10Q8WWZ4 1543 aa24.02■■□□□ 1.44
TCOF1-215ENST00000515516 SYNJ2O15056 1496 aa23.97■■□□□ 1.43
TCOF1-215ENST00000515516 CYB5RLQ6IPT4 315 aa23.97■■□□□ 1.43
TCOF1-215ENST00000515516 TOP2BQ02880 1626 aa23.93■■□□□ 1.42
TCOF1-215ENST00000515516 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
TCOF1-215ENST00000515516 ABCA5Q8WWZ7 1642 aa23.88■■□□□ 1.41
TCOF1-215ENST00000515516 BIVM-ERCC5R4GMW8 1640 aa23.88■■□□□ 1.41
TCOF1-215ENST00000515516 PBRM1Q86U86 1689 aa23.86■■□□□ 1.41
TCOF1-215ENST00000515516 CLASP1Q7Z460 1538 aa23.83■■□□□ 1.41
TCOF1-215ENST00000515516 ARAP1Q96P48 1450 aa23.81■■□□□ 1.4
TCOF1-215ENST00000515516 FHAD1B1AJZ9 1412 aa23.76■■□□□ 1.39
TCOF1-215ENST00000515516 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
TCOF1-215ENST00000515516 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
TCOF1-215ENST00000515516 ADAMTS12P58397 1594 aa23.71■■□□□ 1.39
TCOF1-215ENST00000515516 TRHP20396 242 aaPredicted RBP23.68■■□□□ 1.38
TCOF1-215ENST00000515516 NUP160Q12769 1436 aa23.65■■□□□ 1.38
TCOF1-215ENST00000515516 KIF27Q86VH2 1401 aa23.59■■□□□ 1.37
TCOF1-215ENST00000515516 CEP170Q5SW79 1584 aa23.59■■□□□ 1.37
TCOF1-215ENST00000515516 IGF1RP08069 1367 aa23.53■■□□□ 1.36
TCOF1-215ENST00000515516 JPH4Q96JJ6 628 aa23.52■■□□□ 1.36
TCOF1-215ENST00000515516 ERCC6L2Q5T890 1561 aa23.47■■□□□ 1.35
TCOF1-215ENST00000515516 PRG4Q92954 1404 aaPredicted RBP23.46■■□□□ 1.35
TCOF1-215ENST00000515516 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms