RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, humanhuman

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-223ENST00000515459 NISCHQ9Y2I1 1504 aa39.91■■■■□ 3.98
LMNA-223ENST00000515459 ABCC9O60706 1549 aa36.18■■■■□ 3.38
LMNA-223ENST00000515459 CCDC180Q9P1Z9 1646 aa35.97■■■■□ 3.35
LMNA-223ENST00000515459 RB1CC1Q8TDY2 1594 aa34.36■■■■□ 3.09
LMNA-223ENST00000515459 DNAJC5BQ9UF47 199 aa34.15■■■■□ 3.06
LMNA-223ENST00000515459 NACADO15069 1562 aa34.05■■■■□ 3.04
LMNA-223ENST00000515459 DCAF8L2P0C7V8 631 aa33.79■■■■□ 3
LMNA-223ENST00000515459 PABPN1Q86U42 306 aaKnown RBP eCLIP33.62■■■□□ 2.97
LMNA-223ENST00000515459 UNC13AQ9UPW8 1703 aa33.6■■■□□ 2.97
LMNA-223ENST00000515459 MYO15BQ96JP2 1530 aa33.49■■■□□ 2.95
LMNA-223ENST00000515459 BICRAQ9NZM4 1560 aa33.34■■■□□ 2.93
LMNA-223ENST00000515459 ZCCHC6Q5VYS8 1495 aaKnown RBP33.01■■■□□ 2.88
LMNA-223ENST00000515459 DCAF1Q9Y4B6 1507 aa32.96■■■□□ 2.87
LMNA-223ENST00000515459 SHROOM4Q9ULL8 1493 aa32.89■■■□□ 2.86
LMNA-223ENST00000515459 SCRIBQ14160 1630 aa32.73■■■□□ 2.83
LMNA-223ENST00000515459 CC2D2AQ9P2K1 1620 aa32.69■■■□□ 2.82
LMNA-223ENST00000515459 CECR2Q9BXF3 1484 aa32.63■■■□□ 2.81
LMNA-223ENST00000515459 EIF4G1Q04637 1599 aaKnown RBP32.56■■■□□ 2.8
LMNA-223ENST00000515459 DNAJC5Q9H3Z4 198 aa31.59■■■□□ 2.65
LMNA-223ENST00000515459 NCAPD3P42695 1498 aa31.42■■■□□ 2.62
LMNA-223ENST00000515459 CUX2O14529 1486 aa31.32■■■□□ 2.6
LMNA-223ENST00000515459 ERCC6Q03468 1493 aa31.28■■■□□ 2.6
LMNA-223ENST00000515459 ATAD2BQ9ULI0 1458 aa31.27■■■□□ 2.6
LMNA-223ENST00000515459 SMARCA2P51531 1590 aa31.21■■■□□ 2.59
LMNA-223ENST00000515459 SMARCA4P51532 1647 aa31.2■■■□□ 2.59
LMNA-223ENST00000515459 HMGXB3Q12766 1538 aa31.18■■■□□ 2.58
LMNA-223ENST00000515459 BAZ1AQ9NRL2 1556 aaPredicted RBP31.01■■■□□ 2.56
LMNA-223ENST00000515459 NESP48681 1621 aa31■■■□□ 2.55
LMNA-223ENST00000515459 BAZ1BQ9UIG0 1483 aaKnown RBP30.98■■■□□ 2.55
LMNA-223ENST00000515459 PEG3Q9GZU2 1588 aa30.91■■■□□ 2.54
LMNA-223ENST00000515459 LAMC3Q9Y6N6 1575 aa30.79■■■□□ 2.52
LMNA-223ENST00000515459 THOC2Q8NI27 1593 aaKnown RBP30.77■■■□□ 2.52
LMNA-223ENST00000515459 MROH2BQ7Z745 1585 aa30.74■■■□□ 2.51
LMNA-223ENST00000515459 KIF21AQ7Z4S6 1674 aa30.64■■■□□ 2.5
LMNA-223ENST00000515459 PDS5BQ9NTI5 1447 aa30.6■■■□□ 2.49
LMNA-223ENST00000515459 CADPSQ9ULU8 1353 aa30.44■■■□□ 2.46
LMNA-223ENST00000515459 WIZO95785 1651 aa30.38■■■□□ 2.45
LMNA-223ENST00000515459 MRC2Q9UBG0 1479 aa30.35■■■□□ 2.45
LMNA-223ENST00000515459 WDR62O43379 1518 aa30.29■■■□□ 2.44
LMNA-223ENST00000515459 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
LMNA-223ENST00000515459 FANCD2Q9BXW9 1451 aa30.11■■■□□ 2.41
LMNA-223ENST00000515459 TRIM41Q8WV44 630 aa30.09■■■□□ 2.41
LMNA-223ENST00000515459 CFTRP13569 1480 aa30.05■■■□□ 2.4
LMNA-223ENST00000515459 RSF1Q96T23 1441 aaPredicted RBP29.99■■■□□ 2.39
LMNA-223ENST00000515459 TOP2AP11388 1531 aaKnown RBP29.97■■■□□ 2.39
LMNA-223ENST00000515459 URB2Q14146 1524 aaKnown RBP29.87■■■□□ 2.37
LMNA-223ENST00000515459 OSCARQ8IYS5 282 aa29.83■■■□□ 2.37
LMNA-223ENST00000515459 PRDM2Q13029 1718 aa29.79■■■□□ 2.36
LMNA-223ENST00000515459 CCDC88BA6NC98 1476 aa29.62■■■□□ 2.33
LMNA-223ENST00000515459 IFT140Q96RY7 1462 aa29.58■■■□□ 2.33
LMNA-223ENST00000515459 ZNF608Q9ULD9 1512 aaPredicted RBP29.54■■■□□ 2.32
LMNA-223ENST00000515459 TOPBP1Q92547 1522 aa29.51■■■□□ 2.32
LMNA-223ENST00000515459 RIMBP3CA6NJZ7 1639 aa29.49■■■□□ 2.31
LMNA-223ENST00000515459 RIMBP3BA6NNM3 1639 aa29.49■■■□□ 2.31
LMNA-223ENST00000515459 RIMBP3Q9UFD9 1639 aa29.49■■■□□ 2.31
LMNA-223ENST00000515459 ABCC8Q09428 1581 aa29.45■■■□□ 2.31
LMNA-223ENST00000515459 EIF4G3O43432 1585 aaKnown RBP29.39■■■□□ 2.3
LMNA-223ENST00000515459 DNMBPQ6XZF7 1577 aa29.39■■■□□ 2.3
LMNA-223ENST00000515459 ARHGEF11O15085 1522 aa29.35■■■□□ 2.29
LMNA-223ENST00000515459 TARBP1Q13395 1621 aaKnown RBP29.28■■■□□ 2.28
LMNA-223ENST00000515459 CHD1O14646 1710 aa29.25■■■□□ 2.27
LMNA-223ENST00000515459 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.275e-13■■■■■ 32.4
LMNA-223ENST00000515459 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
LMNA-223ENST00000515459 CYB5RLQ6IPT4 315 aa29.15■■■□□ 2.26
LMNA-223ENST00000515459 FBLN2P98095 1184 aa29.11■■■□□ 2.25
LMNA-223ENST00000515459 RAD54L2Q9Y4B4 1467 aa29.08■■■□□ 2.25
LMNA-223ENST00000515459 SOGA1O94964 1423 aa29.05■■■□□ 2.24
LMNA-223ENST00000515459 ARAP1Q96P48 1450 aa29.04■■■□□ 2.24
LMNA-223ENST00000515459 TDRD9Q8NDG6 1382 aaKnown RBP29.01■■■□□ 2.24
LMNA-223ENST00000515459 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
LMNA-223ENST00000515459 FGD5Q6ZNL6 1462 aa28.97■■■□□ 2.23
LMNA-223ENST00000515459 SNAPC4Q5SXM2 1469 aa28.94■■■□□ 2.22
LMNA-223ENST00000515459 TRHP20396 242 aaPredicted RBP28.93■■■□□ 2.22
LMNA-223ENST00000515459 CUX1P39880 1505 aa28.89■■■□□ 2.22
LMNA-223ENST00000515459 CLASP1Q7Z460 1538 aa28.88■■■□□ 2.21
LMNA-223ENST00000515459 MAGI1Q96QZ7 1491 aaPredicted RBP28.87■■■□□ 2.21
LMNA-223ENST00000515459 CHMP7Q8WUX9 453 aaPredicted RBP28.86■■■□□ 2.21
LMNA-223ENST00000515459 SYNJ1O43426 1573 aa28.85■■■□□ 2.21
LMNA-223ENST00000515459 GRIN2BQ13224 1484 aa28.84■■■□□ 2.21
LMNA-223ENST00000515459 SYNJ2O15056 1496 aa28.78■■■□□ 2.2
LMNA-223ENST00000515459 PBRM1Q86U86 1689 aa28.74■■■□□ 2.19
LMNA-223ENST00000515459 GAPVD1Q14C86 1478 aa28.7■■■□□ 2.18
LMNA-223ENST00000515459 ABCA10Q8WWZ4 1543 aa28.63■■■□□ 2.17
LMNA-223ENST00000515459 ABCA5Q8WWZ7 1642 aa28.62■■■□□ 2.17
LMNA-223ENST00000515459 SUPT5HO00267 1087 aaKnown RBP28.47■■■□□ 2.15
LMNA-223ENST00000515459 GRIN2AQ12879 1464 aa28.46■■■□□ 2.15
LMNA-223ENST00000515459 WRNQ14191 1432 aaPredicted RBP eCLIP28.46■■■□□ 2.155e-6■■■■■ 29.2
LMNA-223ENST00000515459 ADAMTS12P58397 1594 aa28.41■■■□□ 2.14
LMNA-223ENST00000515459 BIVM-ERCC5R4GMW8 1640 aa28.4■■■□□ 2.14
LMNA-223ENST00000515459 ERCC6L2Q5T890 1561 aa28.39■■■□□ 2.14
LMNA-223ENST00000515459 CEP170Q5SW79 1584 aa28.38■■■□□ 2.13
LMNA-223ENST00000515459 TOP2BQ02880 1626 aa28.38■■■□□ 2.13
LMNA-223ENST00000515459 NUP160Q12769 1436 aa28.37■■■□□ 2.13
LMNA-223ENST00000515459 FHAD1B1AJZ9 1412 aa28.32■■■□□ 2.12
LMNA-223ENST00000515459 SHROOM2Q13796 1616 aa28.31■■■□□ 2.12
LMNA-223ENST00000515459 AEBP2Q6ZN18 517 aaPredicted RBP28.29■■■□□ 2.12
LMNA-223ENST00000515459 ERICH3Q5RHP9 1530 aa28.28■■■□□ 2.12
LMNA-223ENST00000515459 PRG4Q92954 1404 aaPredicted RBP28.13■■■□□ 2.09
LMNA-223ENST00000515459 JPH4Q96JJ6 628 aa28.08■■■□□ 2.09
LMNA-223ENST00000515459 KIF13AQ9H1H9 1805 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms