RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	NISCH	Q9Y2I1	1504 aa		39.91	■■■■□ 3.98
LMNA-223	ENST00000515459	ABCC9	O60706	1549 aa		36.18	■■■■□ 3.38
LMNA-223	ENST00000515459	CCDC180	Q9P1Z9	1646 aa		35.97	■■■■□ 3.35
LMNA-223	ENST00000515459	RB1CC1	Q8TDY2	1594 aa		34.36	■■■■□ 3.09
LMNA-223	ENST00000515459	DNAJC5B	Q9UF47	199 aa		34.15	■■■■□ 3.06
LMNA-223	ENST00000515459	NACAD	O15069	1562 aa		34.05	■■■■□ 3.04
LMNA-223	ENST00000515459	DCAF8L2	P0C7V8	631 aa		33.79	■■■■□ 3
LMNA-223	ENST00000515459	PABPN1	Q86U42	306 aa	Known RBP eCLIP	33.62	■■■□□ 2.97
LMNA-223	ENST00000515459	UNC13A	Q9UPW8	1703 aa		33.6	■■■□□ 2.97
LMNA-223	ENST00000515459	MYO15B	Q96JP2	1530 aa		33.49	■■■□□ 2.95
LMNA-223	ENST00000515459	BICRA	Q9NZM4	1560 aa		33.34	■■■□□ 2.93
LMNA-223	ENST00000515459	ZCCHC6	Q5VYS8	1495 aa	Known RBP	33.01	■■■□□ 2.88
LMNA-223	ENST00000515459	DCAF1	Q9Y4B6	1507 aa		32.96	■■■□□ 2.87
LMNA-223	ENST00000515459	SHROOM4	Q9ULL8	1493 aa		32.89	■■■□□ 2.86
LMNA-223	ENST00000515459	SCRIB	Q14160	1630 aa		32.73	■■■□□ 2.83
LMNA-223	ENST00000515459	CC2D2A	Q9P2K1	1620 aa		32.69	■■■□□ 2.82
LMNA-223	ENST00000515459	CECR2	Q9BXF3	1484 aa		32.63	■■■□□ 2.81
LMNA-223	ENST00000515459	EIF4G1	Q04637	1599 aa	Known RBP	32.56	■■■□□ 2.8
LMNA-223	ENST00000515459	DNAJC5	Q9H3Z4	198 aa		31.59	■■■□□ 2.65
LMNA-223	ENST00000515459	NCAPD3	P42695	1498 aa		31.42	■■■□□ 2.62
LMNA-223	ENST00000515459	CUX2	O14529	1486 aa		31.32	■■■□□ 2.6
LMNA-223	ENST00000515459	ERCC6	Q03468	1493 aa		31.28	■■■□□ 2.6
LMNA-223	ENST00000515459	ATAD2B	Q9ULI0	1458 aa		31.27	■■■□□ 2.6
LMNA-223	ENST00000515459	SMARCA2	P51531	1590 aa		31.21	■■■□□ 2.59
LMNA-223	ENST00000515459	SMARCA4	P51532	1647 aa		31.2	■■■□□ 2.59
LMNA-223	ENST00000515459	HMGXB3	Q12766	1538 aa		31.18	■■■□□ 2.58
LMNA-223	ENST00000515459	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	31.01	■■■□□ 2.56
LMNA-223	ENST00000515459	NES	P48681	1621 aa		31	■■■□□ 2.55
LMNA-223	ENST00000515459	BAZ1B	Q9UIG0	1483 aa	Known RBP	30.98	■■■□□ 2.55
LMNA-223	ENST00000515459	PEG3	Q9GZU2	1588 aa		30.91	■■■□□ 2.54
LMNA-223	ENST00000515459	LAMC3	Q9Y6N6	1575 aa		30.79	■■■□□ 2.52
LMNA-223	ENST00000515459	THOC2	Q8NI27	1593 aa	Known RBP	30.77	■■■□□ 2.52
LMNA-223	ENST00000515459	MROH2B	Q7Z745	1585 aa		30.74	■■■□□ 2.51
LMNA-223	ENST00000515459	KIF21A	Q7Z4S6	1674 aa		30.64	■■■□□ 2.5
LMNA-223	ENST00000515459	PDS5B	Q9NTI5	1447 aa		30.6	■■■□□ 2.49
LMNA-223	ENST00000515459	CADPS	Q9ULU8	1353 aa		30.44	■■■□□ 2.46
LMNA-223	ENST00000515459	WIZ	O95785	1651 aa		30.38	■■■□□ 2.45
LMNA-223	ENST00000515459	MRC2	Q9UBG0	1479 aa		30.35	■■■□□ 2.45
LMNA-223	ENST00000515459	WDR62	O43379	1518 aa		30.29	■■■□□ 2.44
LMNA-223	ENST00000515459	CEP164	Q9UPV0	1460 aa		30.18	■■■□□ 2.42
LMNA-223	ENST00000515459	FANCD2	Q9BXW9	1451 aa		30.11	■■■□□ 2.41
LMNA-223	ENST00000515459	TRIM41	Q8WV44	630 aa		30.09	■■■□□ 2.41
LMNA-223	ENST00000515459	CFTR	P13569	1480 aa		30.05	■■■□□ 2.4
LMNA-223	ENST00000515459	RSF1	Q96T23	1441 aa	Predicted RBP	29.99	■■■□□ 2.39
LMNA-223	ENST00000515459	TOP2A	P11388	1531 aa	Known RBP	29.97	■■■□□ 2.39
LMNA-223	ENST00000515459	URB2	Q14146	1524 aa	Known RBP	29.87	■■■□□ 2.37
LMNA-223	ENST00000515459	OSCAR	Q8IYS5	282 aa		29.83	■■■□□ 2.37
LMNA-223	ENST00000515459	PRDM2	Q13029	1718 aa		29.79	■■■□□ 2.36
LMNA-223	ENST00000515459	CCDC88B	A6NC98	1476 aa		29.62	■■■□□ 2.33
LMNA-223	ENST00000515459	IFT140	Q96RY7	1462 aa		29.58	■■■□□ 2.33
LMNA-223	ENST00000515459	ZNF608	Q9ULD9	1512 aa	Predicted RBP	29.54	■■■□□ 2.32
LMNA-223	ENST00000515459	TOPBP1	Q92547	1522 aa		29.51	■■■□□ 2.32
LMNA-223	ENST00000515459	RIMBP3C	A6NJZ7	1639 aa		29.49	■■■□□ 2.31
LMNA-223	ENST00000515459	RIMBP3B	A6NNM3	1639 aa		29.49	■■■□□ 2.31
LMNA-223	ENST00000515459	RIMBP3	Q9UFD9	1639 aa		29.49	■■■□□ 2.31
LMNA-223	ENST00000515459	ABCC8	Q09428	1581 aa		29.45	■■■□□ 2.31
LMNA-223	ENST00000515459	EIF4G3	O43432	1585 aa	Known RBP	29.39	■■■□□ 2.3
LMNA-223	ENST00000515459	DNMBP	Q6XZF7	1577 aa		29.39	■■■□□ 2.3
LMNA-223	ENST00000515459	ARHGEF11	O15085	1522 aa		29.35	■■■□□ 2.29
LMNA-223	ENST00000515459	TARBP1	Q13395	1621 aa	Known RBP	29.28	■■■□□ 2.28
LMNA-223	ENST00000515459	CHD1	O14646	1710 aa		29.25	■■■□□ 2.27
LMNA-223	ENST00000515459	AQR	O60306	1485 aa	Known RBP eCLIP	29.24	■■■□□ 2.27	5e-13	■■■■■ 32.4
LMNA-223	ENST00000515459	POLA1	P09884	1462 aa	Predicted RBP	29.19	■■■□□ 2.26
LMNA-223	ENST00000515459	CYB5RL	Q6IPT4	315 aa		29.15	■■■□□ 2.26
LMNA-223	ENST00000515459	FBLN2	P98095	1184 aa		29.11	■■■□□ 2.25
LMNA-223	ENST00000515459	RAD54L2	Q9Y4B4	1467 aa		29.08	■■■□□ 2.25
LMNA-223	ENST00000515459	SOGA1	O94964	1423 aa		29.05	■■■□□ 2.24
LMNA-223	ENST00000515459	ARAP1	Q96P48	1450 aa		29.04	■■■□□ 2.24
LMNA-223	ENST00000515459	TDRD9	Q8NDG6	1382 aa	Known RBP	29.01	■■■□□ 2.24
LMNA-223	ENST00000515459	WDR97	A6NE52	1622 aa		28.98	■■■□□ 2.23
LMNA-223	ENST00000515459	FGD5	Q6ZNL6	1462 aa		28.97	■■■□□ 2.23
LMNA-223	ENST00000515459	SNAPC4	Q5SXM2	1469 aa		28.94	■■■□□ 2.22
LMNA-223	ENST00000515459	TRH	P20396	242 aa	Predicted RBP	28.93	■■■□□ 2.22
LMNA-223	ENST00000515459	CUX1	P39880	1505 aa		28.89	■■■□□ 2.22
LMNA-223	ENST00000515459	CLASP1	Q7Z460	1538 aa		28.88	■■■□□ 2.21
LMNA-223	ENST00000515459	MAGI1	Q96QZ7	1491 aa	Predicted RBP	28.87	■■■□□ 2.21
LMNA-223	ENST00000515459	CHMP7	Q8WUX9	453 aa	Predicted RBP	28.86	■■■□□ 2.21
LMNA-223	ENST00000515459	SYNJ1	O43426	1573 aa		28.85	■■■□□ 2.21
LMNA-223	ENST00000515459	GRIN2B	Q13224	1484 aa		28.84	■■■□□ 2.21
LMNA-223	ENST00000515459	SYNJ2	O15056	1496 aa		28.78	■■■□□ 2.2
LMNA-223	ENST00000515459	PBRM1	Q86U86	1689 aa		28.74	■■■□□ 2.19
LMNA-223	ENST00000515459	GAPVD1	Q14C86	1478 aa		28.7	■■■□□ 2.18
LMNA-223	ENST00000515459	ABCA10	Q8WWZ4	1543 aa		28.63	■■■□□ 2.17
LMNA-223	ENST00000515459	ABCA5	Q8WWZ7	1642 aa		28.62	■■■□□ 2.17
LMNA-223	ENST00000515459	SUPT5H	O00267	1087 aa	Known RBP	28.47	■■■□□ 2.15
LMNA-223	ENST00000515459	GRIN2A	Q12879	1464 aa		28.46	■■■□□ 2.15
LMNA-223	ENST00000515459	WRN	Q14191	1432 aa	Predicted RBP eCLIP	28.46	■■■□□ 2.15	5e-6	■■■■■ 29.2
LMNA-223	ENST00000515459	ADAMTS12	P58397	1594 aa		28.41	■■■□□ 2.14
LMNA-223	ENST00000515459	BIVM-ERCC5	R4GMW8	1640 aa		28.4	■■■□□ 2.14
LMNA-223	ENST00000515459	ERCC6L2	Q5T890	1561 aa		28.39	■■■□□ 2.14
LMNA-223	ENST00000515459	CEP170	Q5SW79	1584 aa		28.38	■■■□□ 2.13
LMNA-223	ENST00000515459	TOP2B	Q02880	1626 aa		28.38	■■■□□ 2.13
LMNA-223	ENST00000515459	NUP160	Q12769	1436 aa		28.37	■■■□□ 2.13
LMNA-223	ENST00000515459	FHAD1	B1AJZ9	1412 aa		28.32	■■■□□ 2.12
LMNA-223	ENST00000515459	SHROOM2	Q13796	1616 aa		28.31	■■■□□ 2.12
LMNA-223	ENST00000515459	AEBP2	Q6ZN18	517 aa	Predicted RBP	28.29	■■■□□ 2.12
LMNA-223	ENST00000515459	ERICH3	Q5RHP9	1530 aa		28.28	■■■□□ 2.12
LMNA-223	ENST00000515459	PRG4	Q92954	1404 aa	Predicted RBP	28.13	■■■□□ 2.09
LMNA-223	ENST00000515459	JPH4	Q96JJ6	628 aa		28.08	■■■□□ 2.09
LMNA-223	ENST00000515459	KIF13A	Q9H1H9	1805 aa		28.08	■■■□□ 2.09

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms