RNA–Protein interactions for RNA: ENST00000515233.5

DDR1-278, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-278ENST00000515233 NISCHQ9Y2I1 1504 aa37.85■■■■□ 3.65
DDR1-278ENST00000515233 ABCC9O60706 1549 aa34.04■■■■□ 3.04
DDR1-278ENST00000515233 CCDC180Q9P1Z9 1646 aa33.99■■■■□ 3.03
DDR1-278ENST00000515233 RB1CC1Q8TDY2 1594 aa32.4■■■□□ 2.78
DDR1-278ENST00000515233 NACADO15069 1562 aa32.18■■■□□ 2.74
DDR1-278ENST00000515233 DNAJC5BQ9UF47 199 aa32.06■■■□□ 2.72
DDR1-278ENST00000515233 DCAF8L2P0C7V8 631 aa31.96■■■□□ 2.71
DDR1-278ENST00000515233 MYO15BQ96JP2 1530 aa31.75■■■□□ 2.67
DDR1-278ENST00000515233 PABPN1Q86U42 306 aaKnown RBP eCLIP31.69■■■□□ 2.66
DDR1-278ENST00000515233 UNC13AQ9UPW8 1703 aa31.65■■■□□ 2.66
DDR1-278ENST00000515233 BICRAQ9NZM4 1560 aa31.46■■■□□ 2.63
DDR1-278ENST00000515233 ZCCHC6Q5VYS8 1495 aaKnown RBP31.33■■■□□ 2.61
DDR1-278ENST00000515233 DCAF1Q9Y4B6 1507 aa31.3■■■□□ 2.6
DDR1-278ENST00000515233 SHROOM4Q9ULL8 1493 aa31.07■■■□□ 2.56
DDR1-278ENST00000515233 SCRIBQ14160 1630 aa30.9■■■□□ 2.54
DDR1-278ENST00000515233 CC2D2AQ9P2K1 1620 aa30.76■■■□□ 2.51
DDR1-278ENST00000515233 EIF4G1Q04637 1599 aaKnown RBP30.69■■■□□ 2.5
DDR1-278ENST00000515233 CECR2Q9BXF3 1484 aa30.69■■■□□ 2.5
DDR1-278ENST00000515233 NCAPD3P42695 1498 aa29.74■■■□□ 2.35
DDR1-278ENST00000515233 ATAD2BQ9ULI0 1458 aa29.59■■■□□ 2.33
DDR1-278ENST00000515233 DNAJC5Q9H3Z4 198 aa29.55■■■□□ 2.32
DDR1-278ENST00000515233 SMARCA4P51532 1647 aa29.52■■■□□ 2.32
DDR1-278ENST00000515233 SMARCA2P51531 1590 aa29.5■■■□□ 2.31
DDR1-278ENST00000515233 HMGXB3Q12766 1538 aa29.46■■■□□ 2.31
DDR1-278ENST00000515233 CUX2O14529 1486 aa29.42■■■□□ 2.3
DDR1-278ENST00000515233 ERCC6Q03468 1493 aa29.39■■■□□ 2.3
DDR1-278ENST00000515233 BAZ1AQ9NRL2 1556 aaPredicted RBP29.39■■■□□ 2.29
DDR1-278ENST00000515233 PEG3Q9GZU2 1588 aa29.28■■■□□ 2.28
DDR1-278ENST00000515233 BAZ1BQ9UIG0 1483 aaKnown RBP29.28■■■□□ 2.28
DDR1-278ENST00000515233 NESP48681 1621 aa29.22■■■□□ 2.27
DDR1-278ENST00000515233 MROH2BQ7Z745 1585 aa29.14■■■□□ 2.26
DDR1-278ENST00000515233 LAMC3Q9Y6N6 1575 aa29.05■■■□□ 2.24
DDR1-278ENST00000515233 THOC2Q8NI27 1593 aaKnown RBP28.94■■■□□ 2.22
DDR1-278ENST00000515233 PDS5BQ9NTI5 1447 aa28.89■■■□□ 2.22
DDR1-278ENST00000515233 KIF21AQ7Z4S6 1674 aa28.83■■■□□ 2.21
DDR1-278ENST00000515233 CADPSQ9ULU8 1353 aa28.81■■■□□ 2.2
DDR1-278ENST00000515233 WIZO95785 1651 aa28.77■■■□□ 2.2
DDR1-278ENST00000515233 MRC2Q9UBG0 1479 aa28.61■■■□□ 2.17
DDR1-278ENST00000515233 WDR62O43379 1518 aa28.55■■■□□ 2.16
DDR1-278ENST00000515233 RSF1Q96T23 1441 aaPredicted RBP28.53■■■□□ 2.16
DDR1-278ENST00000515233 CEP164Q9UPV0 1460 aa28.47■■■□□ 2.15
DDR1-278ENST00000515233 CFTRP13569 1480 aa28.46■■■□□ 2.15
DDR1-278ENST00000515233 FANCD2Q9BXW9 1451 aa28.45■■■□□ 2.14
DDR1-278ENST00000515233 TOP2AP11388 1531 aaKnown RBP28.41■■■□□ 2.14
DDR1-278ENST00000515233 URB2Q14146 1524 aaKnown RBP28.21■■■□□ 2.11
DDR1-278ENST00000515233 TRIM41Q8WV44 630 aa28.12■■■□□ 2.09
DDR1-278ENST00000515233 PRDM2Q13029 1718 aa28.12■■■□□ 2.09
DDR1-278ENST00000515233 CCDC88BA6NC98 1476 aa28.11■■■□□ 2.09
DDR1-278ENST00000515233 OSCARQ8IYS5 282 aa28.1■■■□□ 2.09
DDR1-278ENST00000515233 IFT140Q96RY7 1462 aa27.94■■■□□ 2.06
DDR1-278ENST00000515233 TOPBP1Q92547 1522 aa27.9■■■□□ 2.06
DDR1-278ENST00000515233 ABCC8Q09428 1581 aa27.89■■■□□ 2.05
DDR1-278ENST00000515233 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
DDR1-278ENST00000515233 DNMBPQ6XZF7 1577 aa27.78■■■□□ 2.04
DDR1-278ENST00000515233 EIF4G3O43432 1585 aaKnown RBP27.69■■■□□ 2.02
DDR1-278ENST00000515233 RIMBP3CA6NJZ7 1639 aa27.67■■■□□ 2.02
DDR1-278ENST00000515233 RIMBP3BA6NNM3 1639 aa27.67■■■□□ 2.02
DDR1-278ENST00000515233 RIMBP3Q9UFD9 1639 aa27.67■■■□□ 2.02
DDR1-278ENST00000515233 TARBP1Q13395 1621 aaKnown RBP27.67■■■□□ 2.02
DDR1-278ENST00000515233 AQRO60306 1485 aaKnown RBP eCLIP27.62■■■□□ 2.012e-7■■■■■ 31.6
DDR1-278ENST00000515233 POLA1P09884 1462 aaPredicted RBP27.6■■■□□ 2.01
DDR1-278ENST00000515233 ARHGEF11O15085 1522 aa27.58■■■□□ 2.01
DDR1-278ENST00000515233 SOGA1O94964 1423 aa27.5■■□□□ 1.99
DDR1-278ENST00000515233 CHD1O14646 1710 aa27.5■■□□□ 1.99
DDR1-278ENST00000515233 RAD54L2Q9Y4B4 1467 aa27.5■■□□□ 1.99
DDR1-278ENST00000515233 FBLN2P98095 1184 aa27.45■■□□□ 1.98
DDR1-278ENST00000515233 TDRD9Q8NDG6 1382 aaKnown RBP27.45■■□□□ 1.98
DDR1-278ENST00000515233 FGD5Q6ZNL6 1462 aa27.41■■□□□ 1.98
DDR1-278ENST00000515233 CYB5RLQ6IPT4 315 aa27.41■■□□□ 1.98
DDR1-278ENST00000515233 WDR97A6NE52 1622 aa27.41■■□□□ 1.98
DDR1-278ENST00000515233 CUX1P39880 1505 aa27.37■■□□□ 1.97
DDR1-278ENST00000515233 SNAPC4Q5SXM2 1469 aa27.32■■□□□ 1.96
DDR1-278ENST00000515233 ARAP1Q96P48 1450 aa27.31■■□□□ 1.96
DDR1-278ENST00000515233 MAGI1Q96QZ7 1491 aaPredicted RBP27.27■■□□□ 1.96
DDR1-278ENST00000515233 CHMP7Q8WUX9 453 aaPredicted RBP27.27■■□□□ 1.96
DDR1-278ENST00000515233 GRIN2BQ13224 1484 aa27.26■■□□□ 1.95
DDR1-278ENST00000515233 CLASP1Q7Z460 1538 aa27.22■■□□□ 1.95
DDR1-278ENST00000515233 SYNJ1O43426 1573 aa27.19■■□□□ 1.94
DDR1-278ENST00000515233 SYNJ2O15056 1496 aa27.19■■□□□ 1.94
DDR1-278ENST00000515233 SUPT5HO00267 1087 aaKnown RBP27.16■■□□□ 1.94
DDR1-278ENST00000515233 GAPVD1Q14C86 1478 aa27.16■■□□□ 1.94
DDR1-278ENST00000515233 ABCA10Q8WWZ4 1543 aa27.12■■□□□ 1.93
DDR1-278ENST00000515233 TRHP20396 242 aaPredicted RBP27.12■■□□□ 1.93
DDR1-278ENST00000515233 PBRM1Q86U86 1689 aa27.11■■□□□ 1.93
DDR1-278ENST00000515233 ABCA5Q8WWZ7 1642 aa27.05■■□□□ 1.92
DDR1-278ENST00000515233 WRNQ14191 1432 aaPredicted RBP eCLIP27■■□□□ 1.91
DDR1-278ENST00000515233 TOP2BQ02880 1626 aa26.93■■□□□ 1.9
DDR1-278ENST00000515233 BIVM-ERCC5R4GMW8 1640 aa26.93■■□□□ 1.9
DDR1-278ENST00000515233 GRIN2AQ12879 1464 aa26.9■■□□□ 1.9
DDR1-278ENST00000515233 ADAMTS12P58397 1594 aa26.84■■□□□ 1.89
DDR1-278ENST00000515233 NUP160Q12769 1436 aa26.83■■□□□ 1.89
DDR1-278ENST00000515233 FHAD1B1AJZ9 1412 aa26.82■■□□□ 1.88
DDR1-278ENST00000515233 CEP170Q5SW79 1584 aa26.8■■□□□ 1.88
DDR1-278ENST00000515233 ERICH3Q5RHP9 1530 aa26.79■■□□□ 1.88
DDR1-278ENST00000515233 ERCC6L2Q5T890 1561 aa26.75■■□□□ 1.87
DDR1-278ENST00000515233 SHROOM2Q13796 1616 aa26.72■■□□□ 1.87
DDR1-278ENST00000515233 JPH4Q96JJ6 628 aa26.6■■□□□ 1.85
DDR1-278ENST00000515233 PRG4Q92954 1404 aaPredicted RBP26.57■■□□□ 1.84
DDR1-278ENST00000515233 RUSC2Q8N2Y8 1516 aa26.47■■□□□ 1.83
DDR1-278ENST00000515233 IGF1RP08069 1367 aa26.45■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms