RNA–Protein interactions for RNA: ENST00000515145.1

TNFRSF25-220, Transcript of TNF receptor superfamily member 25, humanhuman

TSL 4

Gene TNFRSF25, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF25-220ENST00000515145 NISCHQ9Y2I1 1504 aa40.87■■■■■ 4.13
TNFRSF25-220ENST00000515145 CCDC180Q9P1Z9 1646 aa36.6■■■■□ 3.45
TNFRSF25-220ENST00000515145 ABCC9O60706 1549 aa36.32■■■■□ 3.4
TNFRSF25-220ENST00000515145 RB1CC1Q8TDY2 1594 aa34.69■■■■□ 3.14
TNFRSF25-220ENST00000515145 NACADO15069 1562 aa34.52■■■■□ 3.12
TNFRSF25-220ENST00000515145 DCAF8L2P0C7V8 631 aa34.25■■■■□ 3.07
TNFRSF25-220ENST00000515145 MYO15BQ96JP2 1530 aa34.15■■■■□ 3.06
TNFRSF25-220ENST00000515145 DNAJC5BQ9UF47 199 aa34.14■■■■□ 3.06
TNFRSF25-220ENST00000515145 ZCCHC6Q5VYS8 1495 aaKnown RBP33.96■■■■□ 3.03
TNFRSF25-220ENST00000515145 UNC13AQ9UPW8 1703 aa33.92■■■■□ 3.02
TNFRSF25-220ENST00000515145 PABPN1Q86U42 306 aaKnown RBP eCLIP33.81■■■■□ 3
TNFRSF25-220ENST00000515145 DCAF1Q9Y4B6 1507 aa33.8■■■■□ 3
TNFRSF25-220ENST00000515145 BICRAQ9NZM4 1560 aa33.7■■■□□ 2.99
TNFRSF25-220ENST00000515145 SCRIBQ14160 1630 aa33.35■■■□□ 2.93
TNFRSF25-220ENST00000515145 SHROOM4Q9ULL8 1493 aa33.29■■■□□ 2.92
TNFRSF25-220ENST00000515145 EIF4G1Q04637 1599 aaKnown RBP32.84■■■□□ 2.85
TNFRSF25-220ENST00000515145 CC2D2AQ9P2K1 1620 aa32.84■■■□□ 2.85
TNFRSF25-220ENST00000515145 CECR2Q9BXF3 1484 aa32.7■■■□□ 2.83
TNFRSF25-220ENST00000515145 NCAPD3P42695 1498 aa31.85■■■□□ 2.69
TNFRSF25-220ENST00000515145 SMARCA4P51532 1647 aa31.85■■■□□ 2.69
TNFRSF25-220ENST00000515145 ATAD2BQ9ULI0 1458 aa31.8■■■□□ 2.68
TNFRSF25-220ENST00000515145 DNAJC5Q9H3Z4 198 aa31.75■■■□□ 2.67
TNFRSF25-220ENST00000515145 SMARCA2P51531 1590 aa31.73■■■□□ 2.67
TNFRSF25-220ENST00000515145 BAZ1AQ9NRL2 1556 aaPredicted RBP31.71■■■□□ 2.67
TNFRSF25-220ENST00000515145 HMGXB3Q12766 1538 aa31.68■■■□□ 2.66
TNFRSF25-220ENST00000515145 PEG3Q9GZU2 1588 aa31.56■■■□□ 2.64
TNFRSF25-220ENST00000515145 BAZ1BQ9UIG0 1483 aaKnown RBP31.5■■■□□ 2.63
TNFRSF25-220ENST00000515145 MROH2BQ7Z745 1585 aa31.5■■■□□ 2.63
TNFRSF25-220ENST00000515145 ERCC6Q03468 1493 aa31.33■■■□□ 2.61
TNFRSF25-220ENST00000515145 NESP48681 1621 aa31.27■■■□□ 2.6
TNFRSF25-220ENST00000515145 CUX2O14529 1486 aa31.23■■■□□ 2.59
TNFRSF25-220ENST00000515145 WIZO95785 1651 aa31.12■■■□□ 2.57
TNFRSF25-220ENST00000515145 LAMC3Q9Y6N6 1575 aa31.11■■■□□ 2.57
TNFRSF25-220ENST00000515145 THOC2Q8NI27 1593 aaKnown RBP30.96■■■□□ 2.55
TNFRSF25-220ENST00000515145 RSF1Q96T23 1441 aaPredicted RBP30.92■■■□□ 2.54
TNFRSF25-220ENST00000515145 KIF21AQ7Z4S6 1674 aa30.9■■■□□ 2.54
TNFRSF25-220ENST00000515145 PDS5BQ9NTI5 1447 aa30.9■■■□□ 2.54
TNFRSF25-220ENST00000515145 CADPSQ9ULU8 1353 aa30.89■■■□□ 2.54
TNFRSF25-220ENST00000515145 TOP2AP11388 1531 aaKnown RBP30.78■■■□□ 2.52
TNFRSF25-220ENST00000515145 MRC2Q9UBG0 1479 aa30.64■■■□□ 2.5
TNFRSF25-220ENST00000515145 CFTRP13569 1480 aa30.61■■■□□ 2.49
TNFRSF25-220ENST00000515145 WDR62O43379 1518 aa30.58■■■□□ 2.49
TNFRSF25-220ENST00000515145 CEP164Q9UPV0 1460 aa30.57■■■□□ 2.48
TNFRSF25-220ENST00000515145 FANCD2Q9BXW9 1451 aa30.55■■■□□ 2.48
TNFRSF25-220ENST00000515145 CCDC88BA6NC98 1476 aa30.38■■■□□ 2.45
TNFRSF25-220ENST00000515145 PRDM2Q13029 1718 aa30.34■■■□□ 2.45
TNFRSF25-220ENST00000515145 URB2Q14146 1524 aaKnown RBP30.3■■■□□ 2.44
TNFRSF25-220ENST00000515145 TRIM41Q8WV44 630 aa30.16■■■□□ 2.42
TNFRSF25-220ENST00000515145 TOPBP1Q92547 1522 aa30.01■■■□□ 2.4
TNFRSF25-220ENST00000515145 IFT140Q96RY7 1462 aa29.94■■■□□ 2.38
TNFRSF25-220ENST00000515145 DNMBPQ6XZF7 1577 aa29.94■■■□□ 2.38
TNFRSF25-220ENST00000515145 ABCC8Q09428 1581 aa29.93■■■□□ 2.38
TNFRSF25-220ENST00000515145 ZNF608Q9ULD9 1512 aaPredicted RBP29.88■■■□□ 2.37
TNFRSF25-220ENST00000515145 EIF4G3O43432 1585 aaKnown RBP29.75■■■□□ 2.35
TNFRSF25-220ENST00000515145 OSCARQ8IYS5 282 aa29.75■■■□□ 2.35
TNFRSF25-220ENST00000515145 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
TNFRSF25-220ENST00000515145 POLA1P09884 1462 aaPredicted RBP29.72■■■□□ 2.35
TNFRSF25-220ENST00000515145 SUPT5HO00267 1087 aaKnown RBP29.64■■■□□ 2.34
TNFRSF25-220ENST00000515145 AQRO60306 1485 aaKnown RBP eCLIP29.61■■■□□ 2.33
TNFRSF25-220ENST00000515145 RAD54L2Q9Y4B4 1467 aa29.59■■■□□ 2.33
TNFRSF25-220ENST00000515145 CUX1P39880 1505 aa29.59■■■□□ 2.33
TNFRSF25-220ENST00000515145 FGD5Q6ZNL6 1462 aa29.56■■■□□ 2.32
TNFRSF25-220ENST00000515145 SOGA1O94964 1423 aa29.54■■■□□ 2.32
TNFRSF25-220ENST00000515145 WDR97A6NE52 1622 aa29.46■■■□□ 2.31
TNFRSF25-220ENST00000515145 CHD1O14646 1710 aa29.46■■■□□ 2.31
TNFRSF25-220ENST00000515145 TDRD9Q8NDG6 1382 aaKnown RBP29.45■■■□□ 2.31
TNFRSF25-220ENST00000515145 RIMBP3CA6NJZ7 1639 aa29.43■■■□□ 2.3
TNFRSF25-220ENST00000515145 RIMBP3BA6NNM3 1639 aa29.43■■■□□ 2.3
TNFRSF25-220ENST00000515145 RIMBP3Q9UFD9 1639 aa29.43■■■□□ 2.3
TNFRSF25-220ENST00000515145 ARHGEF11O15085 1522 aa29.36■■■□□ 2.29
TNFRSF25-220ENST00000515145 SNAPC4Q5SXM2 1469 aa29.35■■■□□ 2.29
TNFRSF25-220ENST00000515145 FBLN2P98095 1184 aa29.3■■■□□ 2.28
TNFRSF25-220ENST00000515145 GRIN2BQ13224 1484 aa29.29■■■□□ 2.28
TNFRSF25-220ENST00000515145 MAGI1Q96QZ7 1491 aaPredicted RBP29.29■■■□□ 2.28
TNFRSF25-220ENST00000515145 ABCA10Q8WWZ4 1543 aa29.25■■■□□ 2.27
TNFRSF25-220ENST00000515145 ABCA5Q8WWZ7 1642 aa29.21■■■□□ 2.27
TNFRSF25-220ENST00000515145 GAPVD1Q14C86 1478 aa29.21■■■□□ 2.27
TNFRSF25-220ENST00000515145 PBRM1Q86U86 1689 aa29.21■■■□□ 2.27
TNFRSF25-220ENST00000515145 BIVM-ERCC5R4GMW8 1640 aa29.19■■■□□ 2.26
TNFRSF25-220ENST00000515145 SYNJ2O15056 1496 aa29.17■■■□□ 2.26
TNFRSF25-220ENST00000515145 TOP2BQ02880 1626 aa29.17■■■□□ 2.26
TNFRSF25-220ENST00000515145 WRNQ14191 1432 aaPredicted RBP eCLIP29.17■■■□□ 2.26
TNFRSF25-220ENST00000515145 CLASP1Q7Z460 1538 aa29.16■■■□□ 2.26
TNFRSF25-220ENST00000515145 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
TNFRSF25-220ENST00000515145 CHMP7Q8WUX9 453 aaPredicted RBP29.14■■■□□ 2.26
TNFRSF25-220ENST00000515145 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
TNFRSF25-220ENST00000515145 CYB5RLQ6IPT4 315 aa29.04■■■□□ 2.24
TNFRSF25-220ENST00000515145 ADAMTS12P58397 1594 aa28.98■■■□□ 2.23
TNFRSF25-220ENST00000515145 GRIN2AQ12879 1464 aa28.92■■■□□ 2.22
TNFRSF25-220ENST00000515145 ERICH3Q5RHP9 1530 aa28.89■■■□□ 2.21
TNFRSF25-220ENST00000515145 FHAD1B1AJZ9 1412 aa28.86■■■□□ 2.21
TNFRSF25-220ENST00000515145 NUP160Q12769 1436 aa28.84■■■□□ 2.21
TNFRSF25-220ENST00000515145 TRHP20396 242 aaPredicted RBP28.83■■■□□ 2.21
TNFRSF25-220ENST00000515145 CEP170Q5SW79 1584 aa28.83■■■□□ 2.21
TNFRSF25-220ENST00000515145 ERCC6L2Q5T890 1561 aa28.71■■■□□ 2.19
TNFRSF25-220ENST00000515145 SHROOM2Q13796 1616 aa28.69■■■□□ 2.18
TNFRSF25-220ENST00000515145 KIF27Q86VH2 1401 aa28.58■■■□□ 2.17
TNFRSF25-220ENST00000515145 RUSC2Q8N2Y8 1516 aa28.56■■■□□ 2.16
TNFRSF25-220ENST00000515145 IGF1RP08069 1367 aa28.53■■■□□ 2.16
TNFRSF25-220ENST00000515145 CUL7Q14999 1698 aa28.51■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms