RNA–Protein interactions for RNA: ENST00000515022.5

TRIM6-211, Transcript of tripartite motif containing 6, humanhuman

TSL 2 BASIC

Gene TRIM6, Length 1,060 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM6-211ENST00000515022 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.13
TRIM6-211ENST00000515022 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
TRIM6-211ENST00000515022 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
TRIM6-211ENST00000515022 ABCC9O60706 1549 aa20.03■□□□□ 0.8
TRIM6-211ENST00000515022 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
TRIM6-211ENST00000515022 DNAJC5BQ9UF47 199 aa19.22■□□□□ 0.67
TRIM6-211ENST00000515022 PHF23Q9BUL5 403 aaPredicted RBP18.95■□□□□ 0.62
TRIM6-211ENST00000515022 SENP3Q9H4L4 574 aaPredicted RBP18.83■□□□□ 0.6
TRIM6-211ENST00000515022 RB1CC1Q8TDY2 1594 aa18.75■□□□□ 0.59
TRIM6-211ENST00000515022 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
TRIM6-211ENST00000515022 DCAF8L2P0C7V8 631 aa18.53■□□□□ 0.56
TRIM6-211ENST00000515022 NACADO15069 1562 aa18.49■□□□□ 0.55
TRIM6-211ENST00000515022 UNC13AQ9UPW8 1703 aa18.42■□□□□ 0.54
TRIM6-211ENST00000515022 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
TRIM6-211ENST00000515022 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
TRIM6-211ENST00000515022 CC2D2AQ9P2K1 1620 aa18.02■□□□□ 0.48
TRIM6-211ENST00000515022 MYO15BQ96JP2 1530 aa18.01■□□□□ 0.47
TRIM6-211ENST00000515022 DNAJC5Q9H3Z4 198 aa17.87■□□□□ 0.45
TRIM6-211ENST00000515022 EIF4G1Q04637 1599 aaKnown RBP17.84■□□□□ 0.45
TRIM6-211ENST00000515022 SCRIBQ14160 1630 aa17.83■□□□□ 0.45
TRIM6-211ENST00000515022 SHROOM4Q9ULL8 1493 aa17.81■□□□□ 0.44
TRIM6-211ENST00000515022 ZCCHC6Q5VYS8 1495 aaKnown RBP17.74■□□□□ 0.43
TRIM6-211ENST00000515022 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
TRIM6-211ENST00000515022 PLPPR3Q6T4P5 718 aa17.59■□□□□ 0.41
TRIM6-211ENST00000515022 FOXD1Q16676 465 aa17.41■□□□□ 0.38
TRIM6-211ENST00000515022 CUX2O14529 1486 aa17.31■□□□□ 0.36
TRIM6-211ENST00000515022 ERCC6Q03468 1493 aa17.28■□□□□ 0.36
TRIM6-211ENST00000515022 NESP48681 1621 aa17.1■□□□□ 0.33
TRIM6-211ENST00000515022 NCAPD3P42695 1498 aa17.09■□□□□ 0.33
TRIM6-211ENST00000515022 TRIM41Q8WV44 630 aa17.03■□□□□ 0.32
TRIM6-211ENST00000515022 ATAD2BQ9ULI0 1458 aa17.03■□□□□ 0.32
TRIM6-211ENST00000515022 THOC2Q8NI27 1593 aaKnown RBP16.93■□□□□ 0.3
TRIM6-211ENST00000515022 HMGXB3Q12766 1538 aa16.91■□□□□ 0.3
TRIM6-211ENST00000515022 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
TRIM6-211ENST00000515022 SMARCA4P51532 1647 aa16.9■□□□□ 0.3
TRIM6-211ENST00000515022 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
TRIM6-211ENST00000515022 KIF21AQ7Z4S6 1674 aa16.83■□□□□ 0.28
TRIM6-211ENST00000515022 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.27
TRIM6-211ENST00000515022 ADRA2BP18089 450 aa16.72■□□□□ 0.27
TRIM6-211ENST00000515022 BAZ1AQ9NRL2 1556 aaPredicted RBP16.71■□□□□ 0.27
TRIM6-211ENST00000515022 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
TRIM6-211ENST00000515022 PPP6R1Q9UPN7 881 aa16.7■□□□□ 0.26
TRIM6-211ENST00000515022 PEG3Q9GZU2 1588 aa16.66■□□□□ 0.26
TRIM6-211ENST00000515022 MROH2BQ7Z745 1585 aa16.64■□□□□ 0.25
TRIM6-211ENST00000515022 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
TRIM6-211ENST00000515022 CADPSQ9ULU8 1353 aa16.58■□□□□ 0.24
TRIM6-211ENST00000515022 WDR62O43379 1518 aa16.56■□□□□ 0.24
TRIM6-211ENST00000515022 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
TRIM6-211ENST00000515022 POTEDQ86YR6 584 aa16.47■□□□□ 0.23
TRIM6-211ENST00000515022 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
TRIM6-211ENST00000515022 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
TRIM6-211ENST00000515022 WIZO95785 1651 aa16.44■□□□□ 0.22
TRIM6-211ENST00000515022 FANCD2Q9BXW9 1451 aa16.42■□□□□ 0.22
TRIM6-211ENST00000515022 RIMBP3CA6NJZ7 1639 aa16.37■□□□□ 0.21
TRIM6-211ENST00000515022 RIMBP3BA6NNM3 1639 aa16.37■□□□□ 0.21
TRIM6-211ENST00000515022 RIMBP3Q9UFD9 1639 aa16.37■□□□□ 0.21
TRIM6-211ENST00000515022 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
TRIM6-211ENST00000515022 CFTRP13569 1480 aa16.29■□□□□ 0.2
TRIM6-211ENST00000515022 ARHGEF11O15085 1522 aa16.25■□□□□ 0.19
TRIM6-211ENST00000515022 ZNF608Q9ULD9 1512 aaPredicted RBP16.24■□□□□ 0.19
TRIM6-211ENST00000515022 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
TRIM6-211ENST00000515022 TRHP20396 242 aaPredicted RBP16.2■□□□□ 0.18
TRIM6-211ENST00000515022 MSH5O43196 834 aa16.14■□□□□ 0.17
TRIM6-211ENST00000515022 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
TRIM6-211ENST00000515022 TOP2AP11388 1531 aaKnown RBP16.13■□□□□ 0.17
TRIM6-211ENST00000515022 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
TRIM6-211ENST00000515022 PRDM2Q13029 1718 aa16.1■□□□□ 0.17
TRIM6-211ENST00000515022 ARAP1Q96P48 1450 aa16.09■□□□□ 0.17
TRIM6-211ENST00000515022 EIF4G3O43432 1585 aaKnown RBP16.08■□□□□ 0.16
TRIM6-211ENST00000515022 CHD1O14646 1710 aa16.08■□□□□ 0.16
TRIM6-211ENST00000515022 TOPBP1Q92547 1522 aa16.07■□□□□ 0.16
TRIM6-211ENST00000515022 FBLN2P98095 1184 aa16.06■□□□□ 0.16
TRIM6-211ENST00000515022 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.169e-8■■□□□ 11.9
TRIM6-211ENST00000515022 CCDC88BA6NC98 1476 aa16■□□□□ 0.15
TRIM6-211ENST00000515022 TARBP1Q13395 1621 aaKnown RBP15.94■□□□□ 0.14
TRIM6-211ENST00000515022 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
TRIM6-211ENST00000515022 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
TRIM6-211ENST00000515022 RAD54L2Q9Y4B4 1467 aa15.89■□□□□ 0.13
TRIM6-211ENST00000515022 TDRD9Q8NDG6 1382 aaKnown RBP15.87■□□□□ 0.13
TRIM6-211ENST00000515022 POLA1P09884 1462 aaPredicted RBP15.87■□□□□ 0.13
TRIM6-211ENST00000515022 SNAPC4Q5SXM2 1469 aa15.84■□□□□ 0.13
TRIM6-211ENST00000515022 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
TRIM6-211ENST00000515022 SOGA1O94964 1423 aa15.8■□□□□ 0.12
TRIM6-211ENST00000515022 CHMP7Q8WUX9 453 aaPredicted RBP15.8■□□□□ 0.12
TRIM6-211ENST00000515022 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
TRIM6-211ENST00000515022 FGD5Q6ZNL6 1462 aa15.72■□□□□ 0.11
TRIM6-211ENST00000515022 GAPVD1Q14C86 1478 aa15.71■□□□□ 0.1
TRIM6-211ENST00000515022 MAGI1Q96QZ7 1491 aaPredicted RBP15.69■□□□□ 0.1
TRIM6-211ENST00000515022 GRIN2BQ13224 1484 aa15.68■□□□□ 0.1
TRIM6-211ENST00000515022 SYNJ2O15056 1496 aa15.67■□□□□ 0.1
TRIM6-211ENST00000515022 CUX1P39880 1505 aa15.66■□□□□ 0.1
TRIM6-211ENST00000515022 ERCC6L2Q5T890 1561 aa15.65■□□□□ 0.1
TRIM6-211ENST00000515022 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
TRIM6-211ENST00000515022 PBRM1Q86U86 1689 aa15.63■□□□□ 0.09
TRIM6-211ENST00000515022 KIF13AQ9H1H9 1805 aa15.52■□□□□ 0.07
TRIM6-211ENST00000515022 CEP170Q5SW79 1584 aa15.51■□□□□ 0.07
TRIM6-211ENST00000515022 ABCA5Q8WWZ7 1642 aa15.5■□□□□ 0.07
TRIM6-211ENST00000515022 GRIN2AQ12879 1464 aa15.48■□□□□ 0.07
TRIM6-211ENST00000515022 PPP4R3CPQ6ZMV5 832 aa15.47■□□□□ 0.07
TRIM6-211ENST00000515022 ABCA10Q8WWZ4 1543 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms