RNA–Protein interactions for RNA: ENST00000514611.1

PFDN1-206, Transcript of prefoldin subunit 1, humanhuman

TSL 2

Gene PFDN1, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1-206ENST00000514611 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
PFDN1-206ENST00000514611 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
PFDN1-206ENST00000514611 ABCC9O60706 1549 aa29.7■■■□□ 2.34
PFDN1-206ENST00000514611 RB1CC1Q8TDY2 1594 aa28.28■■■□□ 2.12
PFDN1-206ENST00000514611 NACADO15069 1562 aa28.11■■■□□ 2.09
PFDN1-206ENST00000514611 DCAF8L2P0C7V8 631 aa28■■■□□ 2.07
PFDN1-206ENST00000514611 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
PFDN1-206ENST00000514611 DNAJC5BQ9UF47 199 aa27.71■■■□□ 2.03
PFDN1-206ENST00000514611 PABPN1Q86U42 306 aaKnown RBP eCLIP27.66■■■□□ 2.02
PFDN1-206ENST00000514611 ZCCHC6Q5VYS8 1495 aaKnown RBP27.65■■■□□ 2.02
PFDN1-206ENST00000514611 UNC13AQ9UPW8 1703 aa27.65■■■□□ 2.02
PFDN1-206ENST00000514611 BICRAQ9NZM4 1560 aa27.49■■□□□ 1.99
PFDN1-206ENST00000514611 DCAF1Q9Y4B6 1507 aa27.47■■□□□ 1.99
PFDN1-206ENST00000514611 SCRIBQ14160 1630 aa27.22■■□□□ 1.95
PFDN1-206ENST00000514611 SHROOM4Q9ULL8 1493 aa27.09■■□□□ 1.93
PFDN1-206ENST00000514611 CC2D2AQ9P2K1 1620 aa26.82■■□□□ 1.88
PFDN1-206ENST00000514611 EIF4G1Q04637 1599 aaKnown RBP26.81■■□□□ 1.88
PFDN1-206ENST00000514611 CECR2Q9BXF3 1484 aa26.72■■□□□ 1.87
PFDN1-206ENST00000514611 NCAPD3P42695 1498 aa25.96■■□□□ 1.75
PFDN1-206ENST00000514611 SMARCA4P51532 1647 aa25.95■■□□□ 1.74
PFDN1-206ENST00000514611 ATAD2BQ9ULI0 1458 aa25.93■■□□□ 1.74
PFDN1-206ENST00000514611 SMARCA2P51531 1590 aa25.84■■□□□ 1.73
PFDN1-206ENST00000514611 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
PFDN1-206ENST00000514611 HMGXB3Q12766 1538 aa25.81■■□□□ 1.72
PFDN1-206ENST00000514611 BAZ1BQ9UIG0 1483 aaKnown RBP25.69■■□□□ 1.7
PFDN1-206ENST00000514611 MROH2BQ7Z745 1585 aa25.68■■□□□ 1.7
PFDN1-206ENST00000514611 PEG3Q9GZU2 1588 aa25.68■■□□□ 1.7
PFDN1-206ENST00000514611 ERCC6Q03468 1493 aa25.61■■□□□ 1.69
PFDN1-206ENST00000514611 NESP48681 1621 aa25.56■■□□□ 1.68
PFDN1-206ENST00000514611 CUX2O14529 1486 aa25.5■■□□□ 1.67
PFDN1-206ENST00000514611 WIZO95785 1651 aa25.37■■□□□ 1.65
PFDN1-206ENST00000514611 LAMC3Q9Y6N6 1575 aa25.35■■□□□ 1.65
PFDN1-206ENST00000514611 THOC2Q8NI27 1593 aaKnown RBP25.28■■□□□ 1.64
PFDN1-206ENST00000514611 DNAJC5Q9H3Z4 198 aa25.28■■□□□ 1.64
PFDN1-206ENST00000514611 KIF21AQ7Z4S6 1674 aa25.21■■□□□ 1.63
PFDN1-206ENST00000514611 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.62
PFDN1-206ENST00000514611 RSF1Q96T23 1441 aaPredicted RBP25.19■■□□□ 1.62
PFDN1-206ENST00000514611 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
PFDN1-206ENST00000514611 TOP2AP11388 1531 aaKnown RBP25.06■■□□□ 1.6
PFDN1-206ENST00000514611 MRC2Q9UBG0 1479 aa25.01■■□□□ 1.59
PFDN1-206ENST00000514611 WDR62O43379 1518 aa24.96■■□□□ 1.59
PFDN1-206ENST00000514611 CFTRP13569 1480 aa24.95■■□□□ 1.58
PFDN1-206ENST00000514611 CEP164Q9UPV0 1460 aa24.94■■□□□ 1.58
PFDN1-206ENST00000514611 FANCD2Q9BXW9 1451 aa24.92■■□□□ 1.58
PFDN1-206ENST00000514611 CCDC88BA6NC98 1476 aa24.76■■□□□ 1.55
PFDN1-206ENST00000514611 URB2Q14146 1524 aaKnown RBP24.73■■□□□ 1.55
PFDN1-206ENST00000514611 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
PFDN1-206ENST00000514611 TOPBP1Q92547 1522 aa24.47■■□□□ 1.51
PFDN1-206ENST00000514611 IFT140Q96RY7 1462 aa24.41■■□□□ 1.5
PFDN1-206ENST00000514611 ZNF608Q9ULD9 1512 aaPredicted RBP24.4■■□□□ 1.5
PFDN1-206ENST00000514611 DNMBPQ6XZF7 1577 aa24.39■■□□□ 1.5
PFDN1-206ENST00000514611 ABCC8Q09428 1581 aa24.36■■□□□ 1.49
PFDN1-206ENST00000514611 OSCARQ8IYS5 282 aa24.31■■□□□ 1.48
PFDN1-206ENST00000514611 TRIM41Q8WV44 630 aa24.29■■□□□ 1.48
PFDN1-206ENST00000514611 EIF4G3O43432 1585 aaKnown RBP24.28■■□□□ 1.48
PFDN1-206ENST00000514611 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
PFDN1-206ENST00000514611 TARBP1Q13395 1621 aaKnown RBP24.24■■□□□ 1.47
PFDN1-206ENST00000514611 AQRO60306 1485 aaKnown RBP eCLIP24.18■■□□□ 1.46
PFDN1-206ENST00000514611 RAD54L2Q9Y4B4 1467 aa24.16■■□□□ 1.46
PFDN1-206ENST00000514611 SUPT5HO00267 1087 aaKnown RBP24.16■■□□□ 1.46
PFDN1-206ENST00000514611 CUX1P39880 1505 aa24.12■■□□□ 1.45
PFDN1-206ENST00000514611 FGD5Q6ZNL6 1462 aa24.12■■□□□ 1.45
PFDN1-206ENST00000514611 SOGA1O94964 1423 aa24.1■■□□□ 1.45
PFDN1-206ENST00000514611 TDRD9Q8NDG6 1382 aaKnown RBP24.05■■□□□ 1.44
PFDN1-206ENST00000514611 RIMBP3CA6NJZ7 1639 aa24.05■■□□□ 1.44
PFDN1-206ENST00000514611 RIMBP3BA6NNM3 1639 aa24.05■■□□□ 1.44
PFDN1-206ENST00000514611 RIMBP3Q9UFD9 1639 aa24.05■■□□□ 1.44
PFDN1-206ENST00000514611 CHD1O14646 1710 aa24.04■■□□□ 1.44
PFDN1-206ENST00000514611 ARHGEF11O15085 1522 aa24■■□□□ 1.43
PFDN1-206ENST00000514611 WDR97A6NE52 1622 aa23.97■■□□□ 1.43
PFDN1-206ENST00000514611 SNAPC4Q5SXM2 1469 aa23.97■■□□□ 1.43
PFDN1-206ENST00000514611 FBLN2P98095 1184 aa23.96■■□□□ 1.43
PFDN1-206ENST00000514611 GRIN2BQ13224 1484 aa23.87■■□□□ 1.41
PFDN1-206ENST00000514611 MAGI1Q96QZ7 1491 aaPredicted RBP23.87■■□□□ 1.41
PFDN1-206ENST00000514611 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
PFDN1-206ENST00000514611 GAPVD1Q14C86 1478 aa23.82■■□□□ 1.4
PFDN1-206ENST00000514611 PBRM1Q86U86 1689 aa23.81■■□□□ 1.4
PFDN1-206ENST00000514611 ABCA5Q8WWZ7 1642 aa23.8■■□□□ 1.4
PFDN1-206ENST00000514611 ARAP1Q96P48 1450 aa23.8■■□□□ 1.4
PFDN1-206ENST00000514611 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
PFDN1-206ENST00000514611 SYNJ2O15056 1496 aa23.79■■□□□ 1.4
PFDN1-206ENST00000514611 CLASP1Q7Z460 1538 aa23.79■■□□□ 1.4
PFDN1-206ENST00000514611 CYB5RLQ6IPT4 315 aa23.77■■□□□ 1.4
PFDN1-206ENST00000514611 SYNJ1O43426 1573 aa23.76■■□□□ 1.39
PFDN1-206ENST00000514611 WRNQ14191 1432 aaPredicted RBP eCLIP23.75■■□□□ 1.39
PFDN1-206ENST00000514611 TOP2BQ02880 1626 aa23.74■■□□□ 1.39
PFDN1-206ENST00000514611 BIVM-ERCC5R4GMW8 1640 aa23.74■■□□□ 1.39
PFDN1-206ENST00000514611 ADAMTS12P58397 1594 aa23.62■■□□□ 1.37
PFDN1-206ENST00000514611 GRIN2AQ12879 1464 aa23.59■■□□□ 1.37
PFDN1-206ENST00000514611 CEP170Q5SW79 1584 aa23.52■■□□□ 1.36
PFDN1-206ENST00000514611 ERICH3Q5RHP9 1530 aa23.52■■□□□ 1.36
PFDN1-206ENST00000514611 FHAD1B1AJZ9 1412 aa23.51■■□□□ 1.35
PFDN1-206ENST00000514611 NUP160Q12769 1436 aa23.51■■□□□ 1.35
PFDN1-206ENST00000514611 TRHP20396 242 aaPredicted RBP23.46■■□□□ 1.35
PFDN1-206ENST00000514611 ERCC6L2Q5T890 1561 aa23.46■■□□□ 1.35
PFDN1-206ENST00000514611 SHROOM2Q13796 1616 aa23.37■■□□□ 1.33
PFDN1-206ENST00000514611 RUSC2Q8N2Y8 1516 aa23.29■■□□□ 1.32
PFDN1-206ENST00000514611 KIF27Q86VH2 1401 aa23.27■■□□□ 1.32
PFDN1-206ENST00000514611 PRG4Q92954 1404 aaPredicted RBP23.25■■□□□ 1.31
PFDN1-206ENST00000514611 IGF1RP08069 1367 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms