RNA–Protein interactions for RNA: ENST00000514588.1

CCND3-221, Transcript of cyclin D3, humanhuman

TSL 4

Gene CCND3, Length 490 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCND3-221ENST00000514588 NISCHQ9Y2I1 1504 aa60.3■■■■■ 7.24
CCND3-221ENST00000514588 CCDC180Q9P1Z9 1646 aa54.03■■■■■ 6.24
CCND3-221ENST00000514588 ABCC9O60706 1549 aa53.98■■■■■ 6.23
CCND3-221ENST00000514588 RB1CC1Q8TDY2 1594 aa51.4■■■■■ 5.82
CCND3-221ENST00000514588 NACADO15069 1562 aa51.07■■■■■ 5.77
CCND3-221ENST00000514588 DCAF8L2P0C7V8 631 aa50.84■■■■■ 5.73
CCND3-221ENST00000514588 DNAJC5BQ9UF47 199 aa50.6■■■■■ 5.69
CCND3-221ENST00000514588 MYO15BQ96JP2 1530 aa50.42■■■■■ 5.66
CCND3-221ENST00000514588 PABPN1Q86U42 306 aaKnown RBP eCLIP50.28■■■■■ 5.64
CCND3-221ENST00000514588 UNC13AQ9UPW8 1703 aa50.2■■■■■ 5.63
CCND3-221ENST00000514588 ZCCHC6Q5VYS8 1495 aaKnown RBP50■■■■■ 5.59
CCND3-221ENST00000514588 BICRAQ9NZM4 1560 aa49.92■■■■■ 5.58
CCND3-221ENST00000514588 DCAF1Q9Y4B6 1507 aa49.81■■■■■ 5.56
CCND3-221ENST00000514588 SHROOM4Q9ULL8 1493 aa49.25■■■■■ 5.48
CCND3-221ENST00000514588 SCRIBQ14160 1630 aa49.25■■■■■ 5.47
CCND3-221ENST00000514588 CC2D2AQ9P2K1 1620 aa48.75■■■■■ 5.39
CCND3-221ENST00000514588 EIF4G1Q04637 1599 aaKnown RBP48.68■■■■■ 5.38
CCND3-221ENST00000514588 CECR2Q9BXF3 1484 aa48.61■■■■■ 5.37
CCND3-221ENST00000514588 NCAPD3P42695 1498 aa47.18■■■■■ 5.14
CCND3-221ENST00000514588 ATAD2BQ9ULI0 1458 aa47.05■■■■■ 5.12
CCND3-221ENST00000514588 SMARCA4P51532 1647 aa47■■■■■ 5.11
CCND3-221ENST00000514588 SMARCA2P51531 1590 aa46.9■■■■■ 5.1
CCND3-221ENST00000514588 HMGXB3Q12766 1538 aa46.81■■■■■ 5.08
CCND3-221ENST00000514588 BAZ1AQ9NRL2 1556 aaPredicted RBP46.78■■■■■ 5.08
CCND3-221ENST00000514588 ERCC6Q03468 1493 aa46.57■■■■■ 5.05
CCND3-221ENST00000514588 BAZ1BQ9UIG0 1483 aaKnown RBP46.57■■■■■ 5.05
CCND3-221ENST00000514588 PEG3Q9GZU2 1588 aa46.56■■■■■ 5.04
CCND3-221ENST00000514588 MROH2BQ7Z745 1585 aa46.47■■■■■ 5.03
CCND3-221ENST00000514588 CUX2O14529 1486 aa46.47■■■■■ 5.03
CCND3-221ENST00000514588 NESP48681 1621 aa46.41■■■■■ 5.02
CCND3-221ENST00000514588 DNAJC5Q9H3Z4 198 aa46.37■■■■■ 5.01
CCND3-221ENST00000514588 LAMC3Q9Y6N6 1575 aa46.06■■■■■ 4.96
CCND3-221ENST00000514588 WIZO95785 1651 aa45.89■■■■■ 4.94
CCND3-221ENST00000514588 THOC2Q8NI27 1593 aaKnown RBP45.89■■■■■ 4.94
CCND3-221ENST00000514588 PDS5BQ9NTI5 1447 aa45.81■■■■■ 4.92
CCND3-221ENST00000514588 KIF21AQ7Z4S6 1674 aa45.76■■■■■ 4.92
CCND3-221ENST00000514588 CADPSQ9ULU8 1353 aa45.74■■■■■ 4.91
CCND3-221ENST00000514588 RSF1Q96T23 1441 aaPredicted RBP45.55■■■■■ 4.88
CCND3-221ENST00000514588 MRC2Q9UBG0 1479 aa45.42■■■■■ 4.86
CCND3-221ENST00000514588 TOP2AP11388 1531 aaKnown RBP45.33■■■■■ 4.85
CCND3-221ENST00000514588 WDR62O43379 1518 aa45.3■■■■■ 4.84
CCND3-221ENST00000514588 CFTRP13569 1480 aa45.25■■■■■ 4.83
CCND3-221ENST00000514588 CEP164Q9UPV0 1460 aa45.25■■■■■ 4.83
CCND3-221ENST00000514588 FANCD2Q9BXW9 1451 aa45.22■■■■■ 4.83
CCND3-221ENST00000514588 URB2Q14146 1524 aaKnown RBP44.85■■■■■ 4.77
CCND3-221ENST00000514588 CCDC88BA6NC98 1476 aa44.84■■■■■ 4.77
CCND3-221ENST00000514588 PRDM2Q13029 1718 aa44.72■■■■■ 4.75
CCND3-221ENST00000514588 OSCARQ8IYS5 282 aa44.38■■■■■ 4.7
CCND3-221ENST00000514588 TOPBP1Q92547 1522 aa44.38■■■■■ 4.69
CCND3-221ENST00000514588 TRIM41Q8WV44 630 aa44.35■■■■■ 4.69
CCND3-221ENST00000514588 IFT140Q96RY7 1462 aa44.34■■■■■ 4.69
CCND3-221ENST00000514588 ZNF608Q9ULD9 1512 aaPredicted RBP44.29■■■■■ 4.68
CCND3-221ENST00000514588 ABCC8Q09428 1581 aa44.26■■■■■ 4.68
CCND3-221ENST00000514588 DNMBPQ6XZF7 1577 aa44.21■■■■■ 4.67
CCND3-221ENST00000514588 EIF4G3O43432 1585 aaKnown RBP44.01■■■■■ 4.64
CCND3-221ENST00000514588 TARBP1Q13395 1621 aaKnown RBP43.97■■■■■ 4.63
CCND3-221ENST00000514588 POLA1P09884 1462 aaPredicted RBP43.94■■■■■ 4.62
CCND3-221ENST00000514588 AQRO60306 1485 aaKnown RBP eCLIP43.89■■■■■ 4.622e-6■■■■■ 29.8
CCND3-221ENST00000514588 RIMBP3CA6NJZ7 1639 aa43.77■■■■■ 4.6
CCND3-221ENST00000514588 RIMBP3BA6NNM3 1639 aa43.77■■■■■ 4.6
CCND3-221ENST00000514588 RIMBP3Q9UFD9 1639 aa43.77■■■■■ 4.6
CCND3-221ENST00000514588 RAD54L2Q9Y4B4 1467 aa43.77■■■■■ 4.6
CCND3-221ENST00000514588 SOGA1O94964 1423 aa43.73■■■■■ 4.59
CCND3-221ENST00000514588 FGD5Q6ZNL6 1462 aa43.67■■■■■ 4.58
CCND3-221ENST00000514588 ARHGEF11O15085 1522 aa43.66■■■■■ 4.58
CCND3-221ENST00000514588 TDRD9Q8NDG6 1382 aaKnown RBP43.66■■■■■ 4.58
CCND3-221ENST00000514588 CUX1P39880 1505 aa43.65■■■■■ 4.58
CCND3-221ENST00000514588 CHD1O14646 1710 aa43.65■■■■■ 4.58
CCND3-221ENST00000514588 SUPT5HO00267 1087 aaKnown RBP43.59■■■■■ 4.57
CCND3-221ENST00000514588 FBLN2P98095 1184 aa43.57■■■■■ 4.57
CCND3-221ENST00000514588 WDR97A6NE52 1622 aa43.5■■■■■ 4.55
CCND3-221ENST00000514588 SNAPC4Q5SXM2 1469 aa43.44■■■■■ 4.54
CCND3-221ENST00000514588 GRIN2BQ13224 1484 aa43.34■■■■■ 4.53
CCND3-221ENST00000514588 CYB5RLQ6IPT4 315 aa43.34■■■■■ 4.53
CCND3-221ENST00000514588 MAGI1Q96QZ7 1491 aaPredicted RBP43.32■■■■■ 4.53
CCND3-221ENST00000514588 CHMP7Q8WUX9 453 aaPredicted RBP43.27■■■■■ 4.52
CCND3-221ENST00000514588 ARAP1Q96P48 1450 aa43.25■■■■■ 4.51
CCND3-221ENST00000514588 GAPVD1Q14C86 1478 aa43.19■■■■■ 4.51
CCND3-221ENST00000514588 CLASP1Q7Z460 1538 aa43.19■■■■■ 4.5
CCND3-221ENST00000514588 SYNJ2O15056 1496 aa43.19■■■■■ 4.5
CCND3-221ENST00000514588 ABCA10Q8WWZ4 1543 aa43.18■■■■■ 4.5
CCND3-221ENST00000514588 SYNJ1O43426 1573 aa43.15■■■■■ 4.5
CCND3-221ENST00000514588 PBRM1Q86U86 1689 aa43.13■■■■■ 4.49
CCND3-221ENST00000514588 ABCA5Q8WWZ7 1642 aa43.1■■■■■ 4.49
CCND3-221ENST00000514588 WRNQ14191 1432 aaPredicted RBP eCLIP43.03■■■■■ 4.48
CCND3-221ENST00000514588 TOP2BQ02880 1626 aa42.96■■■■■ 4.47
CCND3-221ENST00000514588 BIVM-ERCC5R4GMW8 1640 aa42.95■■■■■ 4.47
CCND3-221ENST00000514588 TRHP20396 242 aaPredicted RBP42.8■■■■■ 4.44
CCND3-221ENST00000514588 GRIN2AQ12879 1464 aa42.78■■■■■ 4.44
CCND3-221ENST00000514588 ADAMTS12P58397 1594 aa42.77■■■■■ 4.44
CCND3-221ENST00000514588 FHAD1B1AJZ9 1412 aa42.66■■■■■ 4.42
CCND3-221ENST00000514588 NUP160Q12769 1436 aa42.65■■■■■ 4.42
CCND3-221ENST00000514588 ERICH3Q5RHP9 1530 aa42.63■■■■■ 4.42
CCND3-221ENST00000514588 CEP170Q5SW79 1584 aa42.63■■■■■ 4.41
CCND3-221ENST00000514588 ERCC6L2Q5T890 1561 aa42.54■■■■■ 4.4
CCND3-221ENST00000514588 SHROOM2Q13796 1616 aa42.43■■■■■ 4.38
CCND3-221ENST00000514588 PRG4Q92954 1404 aaPredicted RBP42.22■■■■■ 4.35
CCND3-221ENST00000514588 JPH4Q96JJ6 628 aa42.21■■■■■ 4.35
CCND3-221ENST00000514588 RUSC2Q8N2Y8 1516 aa42.16■■■■■ 4.34
CCND3-221ENST00000514588 IGF1RP08069 1367 aa42.14■■■■■ 4.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms