RNA–Protein interactions for RNA: ENST00000514469.1

HMGXB3-205, Transcript of HMG-box containing 3, humanhuman

TSL 5

Gene HMGXB3, Length 975 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-205ENST00000514469 NISCHQ9Y2I1 1504 aa26.08■■□□□ 1.77
HMGXB3-205ENST00000514469 CCDC180Q9P1Z9 1646 aa23.36■■□□□ 1.33
HMGXB3-205ENST00000514469 ABCC9O60706 1549 aa23.05■■□□□ 1.28
HMGXB3-205ENST00000514469 RB1CC1Q8TDY2 1594 aa22.08■■□□□ 1.13
HMGXB3-205ENST00000514469 NACADO15069 1562 aa21.99■■□□□ 1.11
HMGXB3-205ENST00000514469 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
HMGXB3-205ENST00000514469 DCAF8L2P0C7V8 631 aa21.74■■□□□ 1.07
HMGXB3-205ENST00000514469 ZCCHC6Q5VYS8 1495 aaKnown RBP21.7■■□□□ 1.06
HMGXB3-205ENST00000514469 DCAF1Q9Y4B6 1507 aa21.6■■□□□ 1.05
HMGXB3-205ENST00000514469 UNC13AQ9UPW8 1703 aa21.58■■□□□ 1.04
HMGXB3-205ENST00000514469 BICRAQ9NZM4 1560 aa21.45■■□□□ 1.02
HMGXB3-205ENST00000514469 PABPN1Q86U42 306 aaKnown RBP eCLIP21.43■■□□□ 1.02
HMGXB3-205ENST00000514469 DNAJC5BQ9UF47 199 aa21.38■■□□□ 1.01
HMGXB3-205ENST00000514469 SCRIBQ14160 1630 aa21.25■□□□□ 0.99
HMGXB3-205ENST00000514469 SHROOM4Q9ULL8 1493 aa21.24■□□□□ 0.99
HMGXB3-205ENST00000514469 EIF4G1Q04637 1599 aaKnown RBP20.89■□□□□ 0.94
HMGXB3-205ENST00000514469 CC2D2AQ9P2K1 1620 aa20.86■□□□□ 0.93
HMGXB3-205ENST00000514469 CECR2Q9BXF3 1484 aa20.75■□□□□ 0.91
HMGXB3-205ENST00000514469 SMARCA4P51532 1647 aa20.31■□□□□ 0.84
HMGXB3-205ENST00000514469 NCAPD3P42695 1498 aa20.29■□□□□ 0.84
HMGXB3-205ENST00000514469 ATAD2BQ9ULI0 1458 aa20.25■□□□□ 0.83
HMGXB3-205ENST00000514469 BAZ1AQ9NRL2 1556 aaPredicted RBP20.24■□□□□ 0.83
HMGXB3-205ENST00000514469 SMARCA2P51531 1590 aa20.22■□□□□ 0.83
HMGXB3-205ENST00000514469 HMGXB3Q12766 1538 aa20.21■□□□□ 0.83
HMGXB3-205ENST00000514469 PEG3Q9GZU2 1588 aa20.15■□□□□ 0.82
HMGXB3-205ENST00000514469 MROH2BQ7Z745 1585 aa20.08■□□□□ 0.81
HMGXB3-205ENST00000514469 BAZ1BQ9UIG0 1483 aaKnown RBP20.07■□□□□ 0.8
HMGXB3-205ENST00000514469 ERCC6Q03468 1493 aa19.89■□□□□ 0.77
HMGXB3-205ENST00000514469 NESP48681 1621 aa19.87■□□□□ 0.77
HMGXB3-205ENST00000514469 WIZO95785 1651 aa19.85■□□□□ 0.77
HMGXB3-205ENST00000514469 CUX2O14529 1486 aa19.83■□□□□ 0.76
HMGXB3-205ENST00000514469 LAMC3Q9Y6N6 1575 aa19.82■□□□□ 0.76
HMGXB3-205ENST00000514469 RSF1Q96T23 1441 aaPredicted RBP19.74■□□□□ 0.75
HMGXB3-205ENST00000514469 THOC2Q8NI27 1593 aaKnown RBP19.7■□□□□ 0.74
HMGXB3-205ENST00000514469 CADPSQ9ULU8 1353 aa19.66■□□□□ 0.74
HMGXB3-205ENST00000514469 TOP2AP11388 1531 aaKnown RBP19.66■□□□□ 0.74
HMGXB3-205ENST00000514469 KIF21AQ7Z4S6 1674 aa19.65■□□□□ 0.74
HMGXB3-205ENST00000514469 PDS5BQ9NTI5 1447 aa19.65■□□□□ 0.74
HMGXB3-205ENST00000514469 CFTRP13569 1480 aa19.51■□□□□ 0.71
HMGXB3-205ENST00000514469 MRC2Q9UBG0 1479 aa19.5■□□□□ 0.71
HMGXB3-205ENST00000514469 WDR62O43379 1518 aa19.47■□□□□ 0.71
HMGXB3-205ENST00000514469 DNAJC5Q9H3Z4 198 aa19.47■□□□□ 0.71
HMGXB3-205ENST00000514469 CEP164Q9UPV0 1460 aa19.46■□□□□ 0.71
HMGXB3-205ENST00000514469 FANCD2Q9BXW9 1451 aa19.45■□□□□ 0.7
HMGXB3-205ENST00000514469 CCDC88BA6NC98 1476 aa19.39■□□□□ 0.69
HMGXB3-205ENST00000514469 PRDM2Q13029 1718 aa19.36■□□□□ 0.69
HMGXB3-205ENST00000514469 URB2Q14146 1524 aaKnown RBP19.29■□□□□ 0.68
HMGXB3-205ENST00000514469 TOPBP1Q92547 1522 aa19.11■□□□□ 0.65
HMGXB3-205ENST00000514469 DNMBPQ6XZF7 1577 aa19.08■□□□□ 0.65
HMGXB3-205ENST00000514469 ABCC8Q09428 1581 aa19.07■□□□□ 0.64
HMGXB3-205ENST00000514469 IFT140Q96RY7 1462 aa19.06■□□□□ 0.64
HMGXB3-205ENST00000514469 ZNF608Q9ULD9 1512 aaPredicted RBP19■□□□□ 0.63
HMGXB3-205ENST00000514469 EIF4G3O43432 1585 aaKnown RBP18.95■□□□□ 0.62
HMGXB3-205ENST00000514469 TARBP1Q13395 1621 aaKnown RBP18.95■□□□□ 0.62
HMGXB3-205ENST00000514469 POLA1P09884 1462 aaPredicted RBP18.94■□□□□ 0.62
HMGXB3-205ENST00000514469 SUPT5HO00267 1087 aaKnown RBP18.91■□□□□ 0.62
HMGXB3-205ENST00000514469 CUX1P39880 1505 aa18.87■□□□□ 0.61
HMGXB3-205ENST00000514469 OSCARQ8IYS5 282 aa18.85■□□□□ 0.61
HMGXB3-205ENST00000514469 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
HMGXB3-205ENST00000514469 AQRO60306 1485 aaKnown RBP eCLIP18.83■□□□□ 0.63e-7■■■■■ 38.9
HMGXB3-205ENST00000514469 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
HMGXB3-205ENST00000514469 SOGA1O94964 1423 aa18.81■□□□□ 0.6
HMGXB3-205ENST00000514469 WDR97A6NE52 1622 aa18.81■□□□□ 0.6
HMGXB3-205ENST00000514469 CHD1O14646 1710 aa18.73■□□□□ 0.59
HMGXB3-205ENST00000514469 TDRD9Q8NDG6 1382 aaKnown RBP18.72■□□□□ 0.59
HMGXB3-205ENST00000514469 SNAPC4Q5SXM2 1469 aa18.68■□□□□ 0.58
HMGXB3-205ENST00000514469 RIMBP3CA6NJZ7 1639 aa18.67■□□□□ 0.58
HMGXB3-205ENST00000514469 RIMBP3BA6NNM3 1639 aa18.67■□□□□ 0.58
HMGXB3-205ENST00000514469 RIMBP3Q9UFD9 1639 aa18.67■□□□□ 0.58
HMGXB3-205ENST00000514469 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
HMGXB3-205ENST00000514469 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
HMGXB3-205ENST00000514469 BIVM-ERCC5R4GMW8 1640 aa18.66■□□□□ 0.58
HMGXB3-205ENST00000514469 GRIN2BQ13224 1484 aa18.65■□□□□ 0.58
HMGXB3-205ENST00000514469 MAGI1Q96QZ7 1491 aaPredicted RBP18.65■□□□□ 0.58
HMGXB3-205ENST00000514469 ARHGEF11O15085 1522 aa18.64■□□□□ 0.58
HMGXB3-205ENST00000514469 TOP2BQ02880 1626 aa18.64■□□□□ 0.57
HMGXB3-205ENST00000514469 ABCA5Q8WWZ7 1642 aa18.64■□□□□ 0.57
HMGXB3-205ENST00000514469 SYNJ1O43426 1573 aa18.63■□□□□ 0.57
HMGXB3-205ENST00000514469 PBRM1Q86U86 1689 aa18.63■□□□□ 0.57
HMGXB3-205ENST00000514469 WRNQ14191 1432 aaPredicted RBP eCLIP18.62■□□□□ 0.57
HMGXB3-205ENST00000514469 GAPVD1Q14C86 1478 aa18.6■□□□□ 0.57
HMGXB3-205ENST00000514469 SYNJ2O15056 1496 aa18.58■□□□□ 0.56
HMGXB3-205ENST00000514469 FBLN2P98095 1184 aa18.57■□□□□ 0.56
HMGXB3-205ENST00000514469 CLASP1Q7Z460 1538 aa18.57■□□□□ 0.56
HMGXB3-205ENST00000514469 CHMP7Q8WUX9 453 aaPredicted RBP18.5■□□□□ 0.55
HMGXB3-205ENST00000514469 ADAMTS12P58397 1594 aa18.48■□□□□ 0.55
HMGXB3-205ENST00000514469 ARAP1Q96P48 1450 aa18.47■□□□□ 0.55
HMGXB3-205ENST00000514469 ERICH3Q5RHP9 1530 aa18.44■□□□□ 0.54
HMGXB3-205ENST00000514469 GRIN2AQ12879 1464 aa18.43■□□□□ 0.54
HMGXB3-205ENST00000514469 FHAD1B1AJZ9 1412 aa18.39■□□□□ 0.53
HMGXB3-205ENST00000514469 CYB5RLQ6IPT4 315 aa18.37■□□□□ 0.53
HMGXB3-205ENST00000514469 NUP160Q12769 1436 aa18.37■□□□□ 0.53
HMGXB3-205ENST00000514469 CEP170Q5SW79 1584 aa18.36■□□□□ 0.53
HMGXB3-205ENST00000514469 SHROOM2Q13796 1616 aa18.28■□□□□ 0.52
HMGXB3-205ENST00000514469 ERCC6L2Q5T890 1561 aa18.25■□□□□ 0.51
HMGXB3-205ENST00000514469 KIF27Q86VH2 1401 aa18.23■□□□□ 0.51
HMGXB3-205ENST00000514469 CUL7Q14999 1698 aa18.22■□□□□ 0.51
HMGXB3-205ENST00000514469 RUSC2Q8N2Y8 1516 aa18.22■□□□□ 0.51
HMGXB3-205ENST00000514469 IGF1RP08069 1367 aa18.19■□□□□ 0.5
HMGXB3-205ENST00000514469 PRG4Q92954 1404 aaPredicted RBP18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms