RNA–Protein interactions for RNA: ENST00000514434.1

DDR1-275, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 3

Gene DDR1, Length 514 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-275ENST00000514434 NISCHQ9Y2I1 1504 aa32.02■■■□□ 2.72
DDR1-275ENST00000514434 CCDC180Q9P1Z9 1646 aa28.51■■■□□ 2.15
DDR1-275ENST00000514434 ABCC9O60706 1549 aa28.34■■■□□ 2.13
DDR1-275ENST00000514434 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
DDR1-275ENST00000514434 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
DDR1-275ENST00000514434 NACADO15069 1562 aa26.91■■□□□ 1.9
DDR1-275ENST00000514434 ZCCHC6Q5VYS8 1495 aaKnown RBP26.6■■□□□ 1.85
DDR1-275ENST00000514434 MYO15BQ96JP2 1530 aa26.59■■□□□ 1.85
DDR1-275ENST00000514434 PABPN1Q86U42 306 aaKnown RBP eCLIP26.5■■□□□ 1.83
DDR1-275ENST00000514434 UNC13AQ9UPW8 1703 aa26.42■■□□□ 1.82
DDR1-275ENST00000514434 DCAF1Q9Y4B6 1507 aa26.39■■□□□ 1.82
DDR1-275ENST00000514434 DNAJC5BQ9UF47 199 aa26.29■■□□□ 1.8
DDR1-275ENST00000514434 BICRAQ9NZM4 1560 aa26.23■■□□□ 1.79
DDR1-275ENST00000514434 SCRIBQ14160 1630 aa26.14■■□□□ 1.77
DDR1-275ENST00000514434 SHROOM4Q9ULL8 1493 aa25.82■■□□□ 1.72
DDR1-275ENST00000514434 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
DDR1-275ENST00000514434 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
DDR1-275ENST00000514434 CECR2Q9BXF3 1484 aa25.46■■□□□ 1.67
DDR1-275ENST00000514434 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
DDR1-275ENST00000514434 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
DDR1-275ENST00000514434 ATAD2BQ9ULI0 1458 aa24.85■■□□□ 1.57
DDR1-275ENST00000514434 BAZ1AQ9NRL2 1556 aaPredicted RBP24.82■■□□□ 1.56
DDR1-275ENST00000514434 SMARCA2P51531 1590 aa24.78■■□□□ 1.56
DDR1-275ENST00000514434 MROH2BQ7Z745 1585 aa24.71■■□□□ 1.55
DDR1-275ENST00000514434 HMGXB3Q12766 1538 aa24.67■■□□□ 1.54
DDR1-275ENST00000514434 BAZ1BQ9UIG0 1483 aaKnown RBP24.65■■□□□ 1.54
DDR1-275ENST00000514434 PEG3Q9GZU2 1588 aa24.59■■□□□ 1.53
DDR1-275ENST00000514434 WIZO95785 1651 aa24.44■■□□□ 1.5
DDR1-275ENST00000514434 ERCC6Q03468 1493 aa24.44■■□□□ 1.5
DDR1-275ENST00000514434 NESP48681 1621 aa24.43■■□□□ 1.5
DDR1-275ENST00000514434 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
DDR1-275ENST00000514434 LAMC3Q9Y6N6 1575 aa24.22■■□□□ 1.47
DDR1-275ENST00000514434 CUX2O14529 1486 aa24.18■■□□□ 1.46
DDR1-275ENST00000514434 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
DDR1-275ENST00000514434 PDS5BQ9NTI5 1447 aa24.12■■□□□ 1.45
DDR1-275ENST00000514434 TOP2AP11388 1531 aaKnown RBP24.11■■□□□ 1.45
DDR1-275ENST00000514434 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.45
DDR1-275ENST00000514434 THOC2Q8NI27 1593 aaKnown RBP24.03■■□□□ 1.44
DDR1-275ENST00000514434 CFTRP13569 1480 aa23.92■■□□□ 1.42
DDR1-275ENST00000514434 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.42
DDR1-275ENST00000514434 CCDC88BA6NC98 1476 aa23.88■■□□□ 1.41
DDR1-275ENST00000514434 FANCD2Q9BXW9 1451 aa23.88■■□□□ 1.41
DDR1-275ENST00000514434 CEP164Q9UPV0 1460 aa23.87■■□□□ 1.41
DDR1-275ENST00000514434 DNAJC5Q9H3Z4 198 aa23.85■■□□□ 1.41
DDR1-275ENST00000514434 WDR62O43379 1518 aa23.79■■□□□ 1.4
DDR1-275ENST00000514434 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
DDR1-275ENST00000514434 URB2Q14146 1524 aaKnown RBP23.66■■□□□ 1.38
DDR1-275ENST00000514434 SUPT5HO00267 1087 aaKnown RBP23.66■■□□□ 1.38
DDR1-275ENST00000514434 TOPBP1Q92547 1522 aa23.46■■□□□ 1.35
DDR1-275ENST00000514434 ABCC8Q09428 1581 aa23.4■■□□□ 1.34
DDR1-275ENST00000514434 DNMBPQ6XZF7 1577 aa23.39■■□□□ 1.33
DDR1-275ENST00000514434 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
DDR1-275ENST00000514434 ZNF608Q9ULD9 1512 aaPredicted RBP23.35■■□□□ 1.33
DDR1-275ENST00000514434 POLA1P09884 1462 aaPredicted RBP23.24■■□□□ 1.31
DDR1-275ENST00000514434 OSCARQ8IYS5 282 aa23.23■■□□□ 1.31
DDR1-275ENST00000514434 RAD54L2Q9Y4B4 1467 aa23.21■■□□□ 1.31
DDR1-275ENST00000514434 TARBP1Q13395 1621 aaKnown RBP23.19■■□□□ 1.3
DDR1-275ENST00000514434 CUX1P39880 1505 aa23.19■■□□□ 1.3
DDR1-275ENST00000514434 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.32e-6■■■■■ 26.9
DDR1-275ENST00000514434 EIF4G3O43432 1585 aaKnown RBP23.18■■□□□ 1.3
DDR1-275ENST00000514434 SOGA1O94964 1423 aa23.18■■□□□ 1.3
DDR1-275ENST00000514434 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
DDR1-275ENST00000514434 TDRD9Q8NDG6 1382 aaKnown RBP23.13■■□□□ 1.29
DDR1-275ENST00000514434 FBLN2P98095 1184 aa23.06■■□□□ 1.28
DDR1-275ENST00000514434 TRIM41Q8WV44 630 aa23.06■■□□□ 1.28
DDR1-275ENST00000514434 CHD1O14646 1710 aa22.96■■□□□ 1.27
DDR1-275ENST00000514434 WRNQ14191 1432 aaPredicted RBP eCLIP22.96■■□□□ 1.27
DDR1-275ENST00000514434 SNAPC4Q5SXM2 1469 aa22.94■■□□□ 1.26
DDR1-275ENST00000514434 WDR97A6NE52 1622 aa22.92■■□□□ 1.26
DDR1-275ENST00000514434 GRIN2BQ13224 1484 aa22.91■■□□□ 1.26
DDR1-275ENST00000514434 SYNJ1O43426 1573 aa22.9■■□□□ 1.26
DDR1-275ENST00000514434 CHMP7Q8WUX9 453 aaPredicted RBP22.89■■□□□ 1.25
DDR1-275ENST00000514434 GAPVD1Q14C86 1478 aa22.89■■□□□ 1.25
DDR1-275ENST00000514434 ABCA10Q8WWZ4 1543 aa22.88■■□□□ 1.25
DDR1-275ENST00000514434 TOP2BQ02880 1626 aa22.88■■□□□ 1.25
DDR1-275ENST00000514434 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
DDR1-275ENST00000514434 MAGI1Q96QZ7 1491 aaPredicted RBP22.85■■□□□ 1.25
DDR1-275ENST00000514434 RIMBP3CA6NJZ7 1639 aa22.84■■□□□ 1.25
DDR1-275ENST00000514434 RIMBP3BA6NNM3 1639 aa22.84■■□□□ 1.25
DDR1-275ENST00000514434 RIMBP3Q9UFD9 1639 aa22.84■■□□□ 1.25
DDR1-275ENST00000514434 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
DDR1-275ENST00000514434 ARHGEF11O15085 1522 aa22.81■■□□□ 1.24
DDR1-275ENST00000514434 ABCA5Q8WWZ7 1642 aa22.8■■□□□ 1.24
DDR1-275ENST00000514434 SYNJ2O15056 1496 aa22.79■■□□□ 1.24
DDR1-275ENST00000514434 CYB5RLQ6IPT4 315 aa22.72■■□□□ 1.23
DDR1-275ENST00000514434 CLASP1Q7Z460 1538 aa22.67■■□□□ 1.22
DDR1-275ENST00000514434 ADAMTS12P58397 1594 aa22.63■■□□□ 1.21
DDR1-275ENST00000514434 ARAP1Q96P48 1450 aa22.61■■□□□ 1.21
DDR1-275ENST00000514434 GRIN2AQ12879 1464 aa22.6■■□□□ 1.21
DDR1-275ENST00000514434 FHAD1B1AJZ9 1412 aa22.6■■□□□ 1.21
DDR1-275ENST00000514434 ERICH3Q5RHP9 1530 aa22.59■■□□□ 1.21
DDR1-275ENST00000514434 CEP170Q5SW79 1584 aa22.51■■□□□ 1.19
DDR1-275ENST00000514434 NUP160Q12769 1436 aa22.5■■□□□ 1.19
DDR1-275ENST00000514434 KIF27Q86VH2 1401 aa22.49■■□□□ 1.19
DDR1-275ENST00000514434 IGF1RP08069 1367 aa22.44■■□□□ 1.18
DDR1-275ENST00000514434 ERCC6L2Q5T890 1561 aa22.42■■□□□ 1.18
DDR1-275ENST00000514434 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
DDR1-275ENST00000514434 JPH4Q96JJ6 628 aa22.35■■□□□ 1.17
DDR1-275ENST00000514434 SHROOM2Q13796 1616 aa22.33■■□□□ 1.17
DDR1-275ENST00000514434 CUL7Q14999 1698 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms