RNA–Protein interactions for RNA: ENST00000514308.3

PDLIM3-210, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 906 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-210ENST00000514308 NISCHQ9Y2I1 1504 aa32.35■■■□□ 2.77
PDLIM3-210ENST00000514308 CCDC180Q9P1Z9 1646 aa28.83■■■□□ 2.21
PDLIM3-210ENST00000514308 ABCC9O60706 1549 aa28.51■■■□□ 2.15
PDLIM3-210ENST00000514308 RB1CC1Q8TDY2 1594 aa27.31■■□□□ 1.96
PDLIM3-210ENST00000514308 NACADO15069 1562 aa27.22■■□□□ 1.95
PDLIM3-210ENST00000514308 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
PDLIM3-210ENST00000514308 MYO15BQ96JP2 1530 aa26.97■■□□□ 1.91
PDLIM3-210ENST00000514308 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
PDLIM3-210ENST00000514308 DCAF1Q9Y4B6 1507 aa26.75■■□□□ 1.87
PDLIM3-210ENST00000514308 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
PDLIM3-210ENST00000514308 UNC13AQ9UPW8 1703 aa26.54■■□□□ 1.84
PDLIM3-210ENST00000514308 BICRAQ9NZM4 1560 aa26.43■■□□□ 1.82
PDLIM3-210ENST00000514308 DNAJC5BQ9UF47 199 aa26.39■■□□□ 1.82
PDLIM3-210ENST00000514308 SCRIBQ14160 1630 aa26.3■■□□□ 1.8
PDLIM3-210ENST00000514308 SHROOM4Q9ULL8 1493 aa26.22■■□□□ 1.79
PDLIM3-210ENST00000514308 EIF4G1Q04637 1599 aaKnown RBP25.8■■□□□ 1.72
PDLIM3-210ENST00000514308 CC2D2AQ9P2K1 1620 aa25.74■■□□□ 1.71
PDLIM3-210ENST00000514308 CECR2Q9BXF3 1484 aa25.66■■□□□ 1.7
PDLIM3-210ENST00000514308 NCAPD3P42695 1498 aa25.13■■□□□ 1.61
PDLIM3-210ENST00000514308 SMARCA4P51532 1647 aa25.12■■□□□ 1.61
PDLIM3-210ENST00000514308 BAZ1AQ9NRL2 1556 aaPredicted RBP25.1■■□□□ 1.61
PDLIM3-210ENST00000514308 ATAD2BQ9ULI0 1458 aa25.09■■□□□ 1.61
PDLIM3-210ENST00000514308 SMARCA2P51531 1590 aa25.05■■□□□ 1.6
PDLIM3-210ENST00000514308 HMGXB3Q12766 1538 aa24.96■■□□□ 1.59
PDLIM3-210ENST00000514308 MROH2BQ7Z745 1585 aa24.91■■□□□ 1.58
PDLIM3-210ENST00000514308 BAZ1BQ9UIG0 1483 aaKnown RBP24.89■■□□□ 1.58
PDLIM3-210ENST00000514308 PEG3Q9GZU2 1588 aa24.89■■□□□ 1.58
PDLIM3-210ENST00000514308 ERCC6Q03468 1493 aa24.64■■□□□ 1.53
PDLIM3-210ENST00000514308 WIZO95785 1651 aa24.59■■□□□ 1.53
PDLIM3-210ENST00000514308 NESP48681 1621 aa24.57■■□□□ 1.52
PDLIM3-210ENST00000514308 RSF1Q96T23 1441 aaPredicted RBP24.56■■□□□ 1.52
PDLIM3-210ENST00000514308 LAMC3Q9Y6N6 1575 aa24.49■■□□□ 1.51
PDLIM3-210ENST00000514308 CUX2O14529 1486 aa24.44■■□□□ 1.5
PDLIM3-210ENST00000514308 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
PDLIM3-210ENST00000514308 PDS5BQ9NTI5 1447 aa24.38■■□□□ 1.49
PDLIM3-210ENST00000514308 TOP2AP11388 1531 aaKnown RBP24.36■■□□□ 1.49
PDLIM3-210ENST00000514308 THOC2Q8NI27 1593 aaKnown RBP24.22■■□□□ 1.47
PDLIM3-210ENST00000514308 KIF21AQ7Z4S6 1674 aa24.21■■□□□ 1.47
PDLIM3-210ENST00000514308 CFTRP13569 1480 aa24.19■■□□□ 1.46
PDLIM3-210ENST00000514308 MRC2Q9UBG0 1479 aa24.12■■□□□ 1.45
PDLIM3-210ENST00000514308 FANCD2Q9BXW9 1451 aa24.11■■□□□ 1.45
PDLIM3-210ENST00000514308 CEP164Q9UPV0 1460 aa24.11■■□□□ 1.45
PDLIM3-210ENST00000514308 CCDC88BA6NC98 1476 aa24.08■■□□□ 1.45
PDLIM3-210ENST00000514308 WDR62O43379 1518 aa24.02■■□□□ 1.44
PDLIM3-210ENST00000514308 DNAJC5Q9H3Z4 198 aa24.02■■□□□ 1.44
PDLIM3-210ENST00000514308 PRDM2Q13029 1718 aa23.86■■□□□ 1.41
PDLIM3-210ENST00000514308 URB2Q14146 1524 aaKnown RBP23.85■■□□□ 1.41
PDLIM3-210ENST00000514308 SUPT5HO00267 1087 aaKnown RBP23.79■■□□□ 1.4
PDLIM3-210ENST00000514308 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
PDLIM3-210ENST00000514308 TOPBP1Q92547 1522 aa23.68■■□□□ 1.38
PDLIM3-210ENST00000514308 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
PDLIM3-210ENST00000514308 IFT140Q96RY7 1462 aa23.62■■□□□ 1.37
PDLIM3-210ENST00000514308 ZNF608Q9ULD9 1512 aaPredicted RBP23.5■■□□□ 1.35
PDLIM3-210ENST00000514308 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
PDLIM3-210ENST00000514308 OSCARQ8IYS5 282 aa23.43■■□□□ 1.34
PDLIM3-210ENST00000514308 TARBP1Q13395 1621 aaKnown RBP23.4■■□□□ 1.34
PDLIM3-210ENST00000514308 SOGA1O94964 1423 aa23.39■■□□□ 1.33
PDLIM3-210ENST00000514308 CUX1P39880 1505 aa23.38■■□□□ 1.33
PDLIM3-210ENST00000514308 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
PDLIM3-210ENST00000514308 FGD5Q6ZNL6 1462 aa23.37■■□□□ 1.33
PDLIM3-210ENST00000514308 RAD54L2Q9Y4B4 1467 aa23.36■■□□□ 1.33
PDLIM3-210ENST00000514308 AQRO60306 1485 aaKnown RBP eCLIP23.35■■□□□ 1.33
PDLIM3-210ENST00000514308 TDRD9Q8NDG6 1382 aaKnown RBP23.29■■□□□ 1.32
PDLIM3-210ENST00000514308 AEBP2Q6ZN18 517 aaPredicted RBP23.29■■□□□ 1.32
PDLIM3-210ENST00000514308 WDR97A6NE52 1622 aa23.23■■□□□ 1.31
PDLIM3-210ENST00000514308 WRNQ14191 1432 aaPredicted RBP eCLIP23.19■■□□□ 1.3
PDLIM3-210ENST00000514308 FBLN2P98095 1184 aa23.19■■□□□ 1.3
PDLIM3-210ENST00000514308 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
PDLIM3-210ENST00000514308 TRIM41Q8WV44 630 aa23.13■■□□□ 1.29
PDLIM3-210ENST00000514308 ABCA10Q8WWZ4 1543 aa23.13■■□□□ 1.29
PDLIM3-210ENST00000514308 SNAPC4Q5SXM2 1469 aa23.12■■□□□ 1.29
PDLIM3-210ENST00000514308 TOP2BQ02880 1626 aa23.11■■□□□ 1.29
PDLIM3-210ENST00000514308 GAPVD1Q14C86 1478 aa23.11■■□□□ 1.29
PDLIM3-210ENST00000514308 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
PDLIM3-210ENST00000514308 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
PDLIM3-210ENST00000514308 CHD1O14646 1710 aa23.08■■□□□ 1.29
PDLIM3-210ENST00000514308 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.29
PDLIM3-210ENST00000514308 SYNJ1O43426 1573 aa23.08■■□□□ 1.29
PDLIM3-210ENST00000514308 ABCA5Q8WWZ7 1642 aa23.02■■□□□ 1.28
PDLIM3-210ENST00000514308 SYNJ2O15056 1496 aa23.02■■□□□ 1.28
PDLIM3-210ENST00000514308 ARHGEF11O15085 1522 aa22.99■■□□□ 1.27
PDLIM3-210ENST00000514308 RIMBP3CA6NJZ7 1639 aa22.98■■□□□ 1.27
PDLIM3-210ENST00000514308 RIMBP3BA6NNM3 1639 aa22.98■■□□□ 1.27
PDLIM3-210ENST00000514308 RIMBP3Q9UFD9 1639 aa22.98■■□□□ 1.27
PDLIM3-210ENST00000514308 PBRM1Q86U86 1689 aa22.98■■□□□ 1.27
PDLIM3-210ENST00000514308 CLASP1Q7Z460 1538 aa22.87■■□□□ 1.25
PDLIM3-210ENST00000514308 ERICH3Q5RHP9 1530 aa22.85■■□□□ 1.25
PDLIM3-210ENST00000514308 FHAD1B1AJZ9 1412 aa22.84■■□□□ 1.25
PDLIM3-210ENST00000514308 CYB5RLQ6IPT4 315 aa22.84■■□□□ 1.25
PDLIM3-210ENST00000514308 GRIN2AQ12879 1464 aa22.83■■□□□ 1.25
PDLIM3-210ENST00000514308 ADAMTS12P58397 1594 aa22.83■■□□□ 1.25
PDLIM3-210ENST00000514308 ARAP1Q96P48 1450 aa22.78■■□□□ 1.24
PDLIM3-210ENST00000514308 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
PDLIM3-210ENST00000514308 NUP160Q12769 1436 aa22.74■■□□□ 1.23
PDLIM3-210ENST00000514308 CEP170Q5SW79 1584 aa22.68■■□□□ 1.22
PDLIM3-210ENST00000514308 IGF1RP08069 1367 aa22.66■■□□□ 1.22
PDLIM3-210ENST00000514308 CUL7Q14999 1698 aa22.57■■□□□ 1.2
PDLIM3-210ENST00000514308 SHROOM2Q13796 1616 aa22.54■■□□□ 1.2
PDLIM3-210ENST00000514308 JPH4Q96JJ6 628 aa22.54■■□□□ 1.2
PDLIM3-210ENST00000514308 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms