RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 NISCHQ9Y2I1 1504 aa16.75■□□□□ 0.27
CLIP1-205ENST00000514271 CCDC180Q9P1Z9 1646 aa15.08■□□□□ 0
CLIP1-205ENST00000514271 AEBP2Q6ZN18 517 aaPredicted RBP14.94□□□□□ -0.02
CLIP1-205ENST00000514271 CHIC1Q5VXU3 224 aa14.27□□□□□ -0.13
CLIP1-205ENST00000514271 ABCC9O60706 1549 aa14.16□□□□□ -0.14
CLIP1-205ENST00000514271 MYO15BQ96JP2 1530 aa14.15□□□□□ -0.14
CLIP1-205ENST00000514271 DCAF1Q9Y4B6 1507 aa14.09□□□□□ -0.15
CLIP1-205ENST00000514271 NACADO15069 1562 aa14.06□□□□□ -0.16
CLIP1-205ENST00000514271 ZCCHC6Q5VYS8 1495 aaKnown RBP14.02□□□□□ -0.17
CLIP1-205ENST00000514271 RB1CC1Q8TDY2 1594 aa14.01□□□□□ -0.17
CLIP1-205ENST00000514271 SHROOM4Q9ULL8 1493 aa13.68□□□□□ -0.22
CLIP1-205ENST00000514271 UNC13AQ9UPW8 1703 aa13.59□□□□□ -0.23
CLIP1-205ENST00000514271 DCAF8L2P0C7V8 631 aa13.51□□□□□ -0.25
CLIP1-205ENST00000514271 BICRAQ9NZM4 1560 aa13.43□□□□□ -0.26
CLIP1-205ENST00000514271 SCRIBQ14160 1630 aa13.42□□□□□ -0.26
CLIP1-205ENST00000514271 PABPN1Q86U42 306 aaKnown RBP eCLIP13.11□□□□□ -0.31
CLIP1-205ENST00000514271 SENP3Q9H4L4 574 aaPredicted RBP13.1□□□□□ -0.31
CLIP1-205ENST00000514271 EIF4G1Q04637 1599 aaKnown RBP13.09□□□□□ -0.31
CLIP1-205ENST00000514271 BAZ1AQ9NRL2 1556 aaPredicted RBP13.05□□□□□ -0.32
CLIP1-205ENST00000514271 SMARCA4P51532 1647 aa12.99□□□□□ -0.33
CLIP1-205ENST00000514271 PEG3Q9GZU2 1588 aa12.98□□□□□ -0.33
CLIP1-205ENST00000514271 CC2D2AQ9P2K1 1620 aa12.97□□□□□ -0.33
CLIP1-205ENST00000514271 SMARCA2P51531 1590 aa12.97□□□□□ -0.33
CLIP1-205ENST00000514271 HMGXB3Q12766 1538 aa12.92□□□□□ -0.34
CLIP1-205ENST00000514271 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
CLIP1-205ENST00000514271 SLC24A1O60721 1099 aa12.83□□□□□ -0.35
CLIP1-205ENST00000514271 CECR2Q9BXF3 1484 aa12.83□□□□□ -0.36
CLIP1-205ENST00000514271 ATAD2BQ9ULI0 1458 aa12.83□□□□□ -0.36
CLIP1-205ENST00000514271 MROH2BQ7Z745 1585 aa12.79□□□□□ -0.36
CLIP1-205ENST00000514271 BAZ1BQ9UIG0 1483 aaKnown RBP12.75□□□□□ -0.37
CLIP1-205ENST00000514271 PHF23Q9BUL5 403 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-205ENST00000514271 RSF1Q96T23 1441 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-205ENST00000514271 TOP2AP11388 1531 aaKnown RBP12.71□□□□□ -0.38
CLIP1-205ENST00000514271 DNAJC5BQ9UF47 199 aa12.69□□□□□ -0.38
CLIP1-205ENST00000514271 HRCP23327 699 aa12.68□□□□□ -0.38
CLIP1-205ENST00000514271 WIZO95785 1651 aa12.66□□□□□ -0.38
CLIP1-205ENST00000514271 LAMC3Q9Y6N6 1575 aa12.59□□□□□ -0.39
CLIP1-205ENST00000514271 PRDM2Q13029 1718 aa12.56□□□□□ -0.4
CLIP1-205ENST00000514271 CADPSQ9ULU8 1353 aa12.44□□□□□ -0.42
CLIP1-205ENST00000514271 CFTRP13569 1480 aa12.43□□□□□ -0.42
CLIP1-205ENST00000514271 PDS5BQ9NTI5 1447 aa12.43□□□□□ -0.42
CLIP1-205ENST00000514271 CCDC88BA6NC98 1476 aa12.4□□□□□ -0.42
CLIP1-205ENST00000514271 ABCC8Q09428 1581 aa12.33□□□□□ -0.44
CLIP1-205ENST00000514271 CUX2O14529 1486 aa12.33□□□□□ -0.44
CLIP1-205ENST00000514271 ERCC6Q03468 1493 aa12.31□□□□□ -0.44
CLIP1-205ENST00000514271 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
CLIP1-205ENST00000514271 KIF21AQ7Z4S6 1674 aa12.3□□□□□ -0.44
CLIP1-205ENST00000514271 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
CLIP1-205ENST00000514271 MRC2Q9UBG0 1479 aa12.28□□□□□ -0.44
CLIP1-205ENST00000514271 FANCD2Q9BXW9 1451 aa12.28□□□□□ -0.44
CLIP1-205ENST00000514271 WDR62O43379 1518 aa12.27□□□□□ -0.45
CLIP1-205ENST00000514271 NESP48681 1621 aa12.26□□□□□ -0.45
CLIP1-205ENST00000514271 WDR97A6NE52 1622 aa12.22□□□□□ -0.45
CLIP1-205ENST00000514271 DNMBPQ6XZF7 1577 aa12.21□□□□□ -0.46
CLIP1-205ENST00000514271 SUPT5HO00267 1087 aaKnown RBP12.21□□□□□ -0.46
CLIP1-205ENST00000514271 BIVM-ERCC5R4GMW8 1640 aa12.13□□□□□ -0.47
CLIP1-205ENST00000514271 TOPBP1Q92547 1522 aa12.11□□□□□ -0.47
CLIP1-205ENST00000514271 URB2Q14146 1524 aaKnown RBP12.11□□□□□ -0.47
CLIP1-205ENST00000514271 IFT140Q96RY7 1462 aa12.09□□□□□ -0.47
CLIP1-205ENST00000514271 TOP2BQ02880 1626 aa12.08□□□□□ -0.48
CLIP1-205ENST00000514271 FOXD1Q16676 465 aa12.08□□□□□ -0.48
CLIP1-205ENST00000514271 PPARGC1BQ86YN6 1023 aaKnown RBP12.08□□□□□ -0.48
CLIP1-205ENST00000514271 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
CLIP1-205ENST00000514271 CUX1P39880 1505 aa12.03□□□□□ -0.48
CLIP1-205ENST00000514271 WRNQ14191 1432 aaPredicted RBP eCLIP12.03□□□□□ -0.48
CLIP1-205ENST00000514271 TARBP1Q13395 1621 aaKnown RBP12.01□□□□□ -0.49
CLIP1-205ENST00000514271 POLA1P09884 1462 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-205ENST00000514271 FGD5Q6ZNL6 1462 aa11.97□□□□□ -0.49
CLIP1-205ENST00000514271 TRIM26Q12899 539 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-205ENST00000514271 ABCA10Q8WWZ4 1543 aa11.97□□□□□ -0.49
CLIP1-205ENST00000514271 PCGF6Q9BYE7 350 aa11.96□□□□□ -0.5
CLIP1-205ENST00000514271 SYNJ1O43426 1573 aa11.95□□□□□ -0.5
CLIP1-205ENST00000514271 SOGA1O94964 1423 aa11.93□□□□□ -0.5
CLIP1-205ENST00000514271 ABCA5Q8WWZ7 1642 aa11.92□□□□□ -0.5
CLIP1-205ENST00000514271 EIF4G3O43432 1585 aaKnown RBP11.91□□□□□ -0.5
CLIP1-205ENST00000514271 PBRM1Q86U86 1689 aa11.89□□□□□ -0.51
CLIP1-205ENST00000514271 PELP1Q8IZL8 1130 aaKnown RBP11.89□□□□□ -0.51
CLIP1-205ENST00000514271 SCAF1Q9H7N4 1312 aaKnown RBP11.88□□□□□ -0.51
CLIP1-205ENST00000514271 MAGI1Q96QZ7 1491 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-205ENST00000514271 ERICH3Q5RHP9 1530 aa11.88□□□□□ -0.51
CLIP1-205ENST00000514271 GRIN2BQ13224 1484 aa11.87□□□□□ -0.51
CLIP1-205ENST00000514271 MYT1Q01538 1121 aa11.86□□□□□ -0.51
CLIP1-205ENST00000514271 CUL7Q14999 1698 aa11.85□□□□□ -0.51
CLIP1-205ENST00000514271 EEA1Q15075 1411 aa11.83□□□□□ -0.51
CLIP1-205ENST00000514271 LOC105371045A0A1W2PR82 267 aa11.83□□□□□ -0.52
CLIP1-205ENST00000514271 GAPVD1Q14C86 1478 aa11.83□□□□□ -0.52
CLIP1-205ENST00000514271 KIF27Q86VH2 1401 aa11.82□□□□□ -0.52
CLIP1-205ENST00000514271 RAD54L2Q9Y4B4 1467 aa11.81□□□□□ -0.52
CLIP1-205ENST00000514271 ADAMTS12P58397 1594 aa11.79□□□□□ -0.52
CLIP1-205ENST00000514271 ZNF608Q9ULD9 1512 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-205ENST00000514271 ZEB1P37275 1124 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-205ENST00000514271 DAXXQ9UER7 740 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-205ENST00000514271 SYNJ2O15056 1496 aa11.77□□□□□ -0.52
CLIP1-205ENST00000514271 FHAD1B1AJZ9 1412 aa11.76□□□□□ -0.53
CLIP1-205ENST00000514271 CHD1O14646 1710 aa11.74□□□□□ -0.53
CLIP1-205ENST00000514271 SNAPC4Q5SXM2 1469 aa11.73□□□□□ -0.53
CLIP1-205ENST00000514271 KIF21BO75037 1637 aa11.73□□□□□ -0.53
CLIP1-205ENST00000514271 MSH5O43196 834 aa11.73□□□□□ -0.53
CLIP1-205ENST00000514271 AQRO60306 1485 aaKnown RBP eCLIP11.73□□□□□ -0.53
CLIP1-205ENST00000514271 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms