RNA–Protein interactions for RNA: ENST00000514168.1

SMAD1-212, Transcript of SMAD family member 1, humanhuman

TSL 4

Gene SMAD1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-212ENST00000514168 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.19
SMAD1-212ENST00000514168 ABCC9O60706 1549 aa25.98■■□□□ 1.75
SMAD1-212ENST00000514168 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
SMAD1-212ENST00000514168 RB1CC1Q8TDY2 1594 aa24.65■■□□□ 1.54
SMAD1-212ENST00000514168 DNAJC5BQ9UF47 199 aa24.65■■□□□ 1.54
SMAD1-212ENST00000514168 NACADO15069 1562 aa24.46■■□□□ 1.51
SMAD1-212ENST00000514168 UNC13AQ9UPW8 1703 aa24.25■■□□□ 1.47
SMAD1-212ENST00000514168 PABPN1Q86U42 306 aaKnown RBP eCLIP24.14■■□□□ 1.45
SMAD1-212ENST00000514168 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
SMAD1-212ENST00000514168 DCAF8L2P0C7V8 631 aa24.1■■□□□ 1.45
SMAD1-212ENST00000514168 BICRAQ9NZM4 1560 aa24.07■■□□□ 1.44
SMAD1-212ENST00000514168 ZCCHC6Q5VYS8 1495 aaKnown RBP23.76■■□□□ 1.39
SMAD1-212ENST00000514168 DCAF1Q9Y4B6 1507 aa23.71■■□□□ 1.39
SMAD1-212ENST00000514168 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
SMAD1-212ENST00000514168 CC2D2AQ9P2K1 1620 aa23.51■■□□□ 1.35
SMAD1-212ENST00000514168 SCRIBQ14160 1630 aa23.51■■□□□ 1.35
SMAD1-212ENST00000514168 CECR2Q9BXF3 1484 aa23.43■■□□□ 1.34
SMAD1-212ENST00000514168 EIF4G1Q04637 1599 aaKnown RBP23.41■■□□□ 1.34
SMAD1-212ENST00000514168 DNAJC5Q9H3Z4 198 aa22.71■■□□□ 1.23
SMAD1-212ENST00000514168 NCAPD3P42695 1498 aa22.6■■□□□ 1.21
SMAD1-212ENST00000514168 ATAD2BQ9ULI0 1458 aa22.5■■□□□ 1.19
SMAD1-212ENST00000514168 CUX2O14529 1486 aa22.49■■□□□ 1.19
SMAD1-212ENST00000514168 SMARCA4P51532 1647 aa22.44■■□□□ 1.18
SMAD1-212ENST00000514168 HMGXB3Q12766 1538 aa22.41■■□□□ 1.18
SMAD1-212ENST00000514168 SMARCA2P51531 1590 aa22.38■■□□□ 1.17
SMAD1-212ENST00000514168 ERCC6Q03468 1493 aa22.37■■□□□ 1.17
SMAD1-212ENST00000514168 NESP48681 1621 aa22.32■■□□□ 1.16
SMAD1-212ENST00000514168 PEG3Q9GZU2 1588 aa22.26■■□□□ 1.15
SMAD1-212ENST00000514168 BAZ1AQ9NRL2 1556 aaPredicted RBP22.25■■□□□ 1.15
SMAD1-212ENST00000514168 BAZ1BQ9UIG0 1483 aaKnown RBP22.21■■□□□ 1.15
SMAD1-212ENST00000514168 THOC2Q8NI27 1593 aaKnown RBP22.17■■□□□ 1.14
SMAD1-212ENST00000514168 MROH2BQ7Z745 1585 aa22.13■■□□□ 1.13
SMAD1-212ENST00000514168 LAMC3Q9Y6N6 1575 aa22.1■■□□□ 1.13
SMAD1-212ENST00000514168 KIF21AQ7Z4S6 1674 aa22.04■■□□□ 1.12
SMAD1-212ENST00000514168 PDS5BQ9NTI5 1447 aa21.91■■□□□ 1.1
SMAD1-212ENST00000514168 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
SMAD1-212ENST00000514168 WIZO95785 1651 aa21.85■■□□□ 1.09
SMAD1-212ENST00000514168 WDR62O43379 1518 aa21.8■■□□□ 1.08
SMAD1-212ENST00000514168 MRC2Q9UBG0 1479 aa21.78■■□□□ 1.08
SMAD1-212ENST00000514168 CEP164Q9UPV0 1460 aa21.63■■□□□ 1.05
SMAD1-212ENST00000514168 CFTRP13569 1480 aa21.61■■□□□ 1.05
SMAD1-212ENST00000514168 FANCD2Q9BXW9 1451 aa21.61■■□□□ 1.05
SMAD1-212ENST00000514168 RSF1Q96T23 1441 aaPredicted RBP21.57■■□□□ 1.04
SMAD1-212ENST00000514168 TOP2AP11388 1531 aaKnown RBP21.54■■□□□ 1.04
SMAD1-212ENST00000514168 TRIM41Q8WV44 630 aa21.51■■□□□ 1.03
SMAD1-212ENST00000514168 URB2Q14146 1524 aaKnown RBP21.5■■□□□ 1.03
SMAD1-212ENST00000514168 PRDM2Q13029 1718 aa21.43■■□□□ 1.02
SMAD1-212ENST00000514168 OSCARQ8IYS5 282 aa21.36■■□□□ 1.01
SMAD1-212ENST00000514168 CCDC88BA6NC98 1476 aa21.29■■□□□ 1
SMAD1-212ENST00000514168 ZNF608Q9ULD9 1512 aaPredicted RBP21.26■□□□□ 0.99
SMAD1-212ENST00000514168 SUPT5HO00267 1087 aaKnown RBP21.25■□□□□ 0.99
SMAD1-212ENST00000514168 IFT140Q96RY7 1462 aa21.22■□□□□ 0.99
SMAD1-212ENST00000514168 RIMBP3CA6NJZ7 1639 aa21.22■□□□□ 0.99
SMAD1-212ENST00000514168 RIMBP3BA6NNM3 1639 aa21.22■□□□□ 0.99
SMAD1-212ENST00000514168 RIMBP3Q9UFD9 1639 aa21.22■□□□□ 0.99
SMAD1-212ENST00000514168 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
SMAD1-212ENST00000514168 EIF4G3O43432 1585 aaKnown RBP21.12■□□□□ 0.97
SMAD1-212ENST00000514168 DNMBPQ6XZF7 1577 aa21.1■□□□□ 0.97
SMAD1-212ENST00000514168 ARHGEF11O15085 1522 aa21.1■□□□□ 0.97
SMAD1-212ENST00000514168 TARBP1Q13395 1621 aaKnown RBP21.09■□□□□ 0.97
SMAD1-212ENST00000514168 ABCC8Q09428 1581 aa21.09■□□□□ 0.97
SMAD1-212ENST00000514168 CHD1O14646 1710 aa21.04■□□□□ 0.96
SMAD1-212ENST00000514168 AQRO60306 1485 aaKnown RBP eCLIP21.01■□□□□ 0.95
SMAD1-212ENST00000514168 POLA1P09884 1462 aaPredicted RBP20.98■□□□□ 0.95
SMAD1-212ENST00000514168 RAD54L2Q9Y4B4 1467 aa20.91■□□□□ 0.94
SMAD1-212ENST00000514168 ARAP1Q96P48 1450 aa20.9■□□□□ 0.94
SMAD1-212ENST00000514168 CYB5RLQ6IPT4 315 aa20.87■□□□□ 0.93
SMAD1-212ENST00000514168 SOGA1O94964 1423 aa20.83■□□□□ 0.93
SMAD1-212ENST00000514168 TDRD9Q8NDG6 1382 aaKnown RBP20.82■□□□□ 0.92
SMAD1-212ENST00000514168 WDR97A6NE52 1622 aa20.81■□□□□ 0.92
SMAD1-212ENST00000514168 FGD5Q6ZNL6 1462 aa20.81■□□□□ 0.92
SMAD1-212ENST00000514168 CUX1P39880 1505 aa20.8■□□□□ 0.92
SMAD1-212ENST00000514168 CLASP1Q7Z460 1538 aa20.8■□□□□ 0.92
SMAD1-212ENST00000514168 SNAPC4Q5SXM2 1469 aa20.78■□□□□ 0.92
SMAD1-212ENST00000514168 FBLN2P98095 1184 aa20.76■□□□□ 0.91
SMAD1-212ENST00000514168 MAGI1Q96QZ7 1491 aaPredicted RBP20.72■□□□□ 0.91
SMAD1-212ENST00000514168 GRIN2BQ13224 1484 aa20.68■□□□□ 0.9
SMAD1-212ENST00000514168 SYNJ1O43426 1573 aa20.68■□□□□ 0.9
SMAD1-212ENST00000514168 PBRM1Q86U86 1689 aa20.65■□□□□ 0.9
SMAD1-212ENST00000514168 SYNJ2O15056 1496 aa20.64■□□□□ 0.89
SMAD1-212ENST00000514168 TRHP20396 242 aaPredicted RBP20.62■□□□□ 0.89
SMAD1-212ENST00000514168 CHMP7Q8WUX9 453 aaPredicted RBP20.61■□□□□ 0.89
SMAD1-212ENST00000514168 ABCA5Q8WWZ7 1642 aa20.6■□□□□ 0.89
SMAD1-212ENST00000514168 GAPVD1Q14C86 1478 aa20.59■□□□□ 0.89
SMAD1-212ENST00000514168 ABCA10Q8WWZ4 1543 aa20.58■□□□□ 0.88
SMAD1-212ENST00000514168 ERCC6L2Q5T890 1561 aa20.48■□□□□ 0.87
SMAD1-212ENST00000514168 GRIN2AQ12879 1464 aa20.44■□□□□ 0.86
SMAD1-212ENST00000514168 ADAMTS12P58397 1594 aa20.44■□□□□ 0.86
SMAD1-212ENST00000514168 CEP170Q5SW79 1584 aa20.42■□□□□ 0.86
SMAD1-212ENST00000514168 BIVM-ERCC5R4GMW8 1640 aa20.42■□□□□ 0.86
SMAD1-212ENST00000514168 NUP160Q12769 1436 aa20.42■□□□□ 0.86
SMAD1-212ENST00000514168 TOP2BQ02880 1626 aa20.39■□□□□ 0.86
SMAD1-212ENST00000514168 SHROOM2Q13796 1616 aa20.39■□□□□ 0.86
SMAD1-212ENST00000514168 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
SMAD1-212ENST00000514168 FHAD1B1AJZ9 1412 aa20.31■□□□□ 0.84
SMAD1-212ENST00000514168 ERICH3Q5RHP9 1530 aa20.29■□□□□ 0.84
SMAD1-212ENST00000514168 KIF13AQ9H1H9 1805 aa20.25■□□□□ 0.83
SMAD1-212ENST00000514168 PRG4Q92954 1404 aaPredicted RBP20.16■□□□□ 0.82
SMAD1-212ENST00000514168 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
SMAD1-212ENST00000514168 AEBP2Q6ZN18 517 aaPredicted RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms