RNA–Protein interactions for RNA: ENST00000513957.1

NEDD4-210, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-210ENST00000513957 NISCHQ9Y2I1 1504 aa19.93■□□□□ 0.78
NEDD4-210ENST00000513957 AEBP2Q6ZN18 517 aaPredicted RBP18.39■□□□□ 0.53
NEDD4-210ENST00000513957 CCDC180Q9P1Z9 1646 aa17.86■□□□□ 0.45
NEDD4-210ENST00000513957 CHIC1Q5VXU3 224 aa17.38■□□□□ 0.37
NEDD4-210ENST00000513957 ABCC9O60706 1549 aa17.21■□□□□ 0.34
NEDD4-210ENST00000513957 NACADO15069 1562 aa16.72■□□□□ 0.27
NEDD4-210ENST00000513957 RB1CC1Q8TDY2 1594 aa16.72■□□□□ 0.27
NEDD4-210ENST00000513957 MYO15BQ96JP2 1530 aa16.69■□□□□ 0.26
NEDD4-210ENST00000513957 ZCCHC6Q5VYS8 1495 aaKnown RBP16.64■□□□□ 0.25
NEDD4-210ENST00000513957 DCAF1Q9Y4B6 1507 aa16.6■□□□□ 0.25
NEDD4-210ENST00000513957 DCAF8L2P0C7V8 631 aa16.42■□□□□ 0.22
NEDD4-210ENST00000513957 UNC13AQ9UPW8 1703 aa16.36■□□□□ 0.21
NEDD4-210ENST00000513957 BICRAQ9NZM4 1560 aa16.15■□□□□ 0.18
NEDD4-210ENST00000513957 SHROOM4Q9ULL8 1493 aa16.15■□□□□ 0.18
NEDD4-210ENST00000513957 SCRIBQ14160 1630 aa16.13■□□□□ 0.17
NEDD4-210ENST00000513957 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
NEDD4-210ENST00000513957 SENP3Q9H4L4 574 aaPredicted RBP15.84■□□□□ 0.13
NEDD4-210ENST00000513957 EIF4G1Q04637 1599 aaKnown RBP15.75■□□□□ 0.11
NEDD4-210ENST00000513957 CC2D2AQ9P2K1 1620 aa15.65■□□□□ 0.1
NEDD4-210ENST00000513957 DNAJC5BQ9UF47 199 aa15.65■□□□□ 0.1
NEDD4-210ENST00000513957 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
NEDD4-210ENST00000513957 PHF23Q9BUL5 403 aaPredicted RBP15.5■□□□□ 0.07
NEDD4-210ENST00000513957 SMARCA4P51532 1647 aa15.5■□□□□ 0.07
NEDD4-210ENST00000513957 BAZ1AQ9NRL2 1556 aaPredicted RBP15.49■□□□□ 0.07
NEDD4-210ENST00000513957 SMARCA2P51531 1590 aa15.41■□□□□ 0.06
NEDD4-210ENST00000513957 POTEDQ86YR6 584 aa15.41■□□□□ 0.06
NEDD4-210ENST00000513957 PEG3Q9GZU2 1588 aa15.41■□□□□ 0.06
NEDD4-210ENST00000513957 NCAPD3P42695 1498 aa15.37■□□□□ 0.05
NEDD4-210ENST00000513957 HMGXB3Q12766 1538 aa15.37■□□□□ 0.05
NEDD4-210ENST00000513957 ATAD2BQ9ULI0 1458 aa15.35■□□□□ 0.05
NEDD4-210ENST00000513957 MROH2BQ7Z745 1585 aa15.31■□□□□ 0.04
NEDD4-210ENST00000513957 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
NEDD4-210ENST00000513957 WIZO95785 1651 aa15.17■□□□□ 0.02
NEDD4-210ENST00000513957 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
NEDD4-210ENST00000513957 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
NEDD4-210ENST00000513957 LAMC3Q9Y6N6 1575 aa15.02■□□□□ -0
NEDD4-210ENST00000513957 PRDM2Q13029 1718 aa14.89□□□□□ -0.03
NEDD4-210ENST00000513957 ERCC6Q03468 1493 aa14.89□□□□□ -0.03
NEDD4-210ENST00000513957 NESP48681 1621 aa14.88□□□□□ -0.03
NEDD4-210ENST00000513957 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
NEDD4-210ENST00000513957 FOXD1Q16676 465 aa14.86□□□□□ -0.03
NEDD4-210ENST00000513957 PDS5BQ9NTI5 1447 aa14.85□□□□□ -0.03
NEDD4-210ENST00000513957 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
NEDD4-210ENST00000513957 CFTRP13569 1480 aa14.83□□□□□ -0.03
NEDD4-210ENST00000513957 CCDC88BA6NC98 1476 aa14.8□□□□□ -0.04
NEDD4-210ENST00000513957 CUX2O14529 1486 aa14.8□□□□□ -0.04
NEDD4-210ENST00000513957 THOC2Q8NI27 1593 aaKnown RBP14.79□□□□□ -0.04
NEDD4-210ENST00000513957 CEP164Q9UPV0 1460 aa14.73□□□□□ -0.05
NEDD4-210ENST00000513957 FANCD2Q9BXW9 1451 aa14.72□□□□□ -0.05
NEDD4-210ENST00000513957 MRC2Q9UBG0 1479 aa14.7□□□□□ -0.06
NEDD4-210ENST00000513957 WDR62O43379 1518 aa14.69□□□□□ -0.06
NEDD4-210ENST00000513957 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
NEDD4-210ENST00000513957 PLPPR3Q6T4P5 718 aa14.63□□□□□ -0.07
NEDD4-210ENST00000513957 ABCC8Q09428 1581 aa14.59□□□□□ -0.07
NEDD4-210ENST00000513957 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
NEDD4-210ENST00000513957 DNMBPQ6XZF7 1577 aa14.53□□□□□ -0.08
NEDD4-210ENST00000513957 TOPBP1Q92547 1522 aa14.5□□□□□ -0.09
NEDD4-210ENST00000513957 IFT140Q96RY7 1462 aa14.43□□□□□ -0.1
NEDD4-210ENST00000513957 WDR97A6NE52 1622 aa14.4□□□□□ -0.1
NEDD4-210ENST00000513957 CUX1P39880 1505 aa14.38□□□□□ -0.11
NEDD4-210ENST00000513957 POLA1P09884 1462 aaPredicted RBP14.38□□□□□ -0.11
NEDD4-210ENST00000513957 TARBP1Q13395 1621 aaKnown RBP14.37□□□□□ -0.11
NEDD4-210ENST00000513957 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
NEDD4-210ENST00000513957 TOP2BQ02880 1626 aa14.33□□□□□ -0.11
NEDD4-210ENST00000513957 FGD5Q6ZNL6 1462 aa14.33□□□□□ -0.12
NEDD4-210ENST00000513957 EIF4G3O43432 1585 aaKnown RBP14.32□□□□□ -0.12
NEDD4-210ENST00000513957 WRNQ14191 1432 aaPredicted RBP eCLIP14.31□□□□□ -0.12
NEDD4-210ENST00000513957 SYNJ1O43426 1573 aa14.27□□□□□ -0.12
NEDD4-210ENST00000513957 SOGA1O94964 1423 aa14.27□□□□□ -0.12
NEDD4-210ENST00000513957 MSH5O43196 834 aa14.27□□□□□ -0.13
NEDD4-210ENST00000513957 ZNF608Q9ULD9 1512 aaPredicted RBP14.26□□□□□ -0.13
NEDD4-210ENST00000513957 ABCA10Q8WWZ4 1543 aa14.24□□□□□ -0.13
NEDD4-210ENST00000513957 EHMT2Q96KQ7 1210 aa14.23□□□□□ -0.13
NEDD4-210ENST00000513957 RAD54L2Q9Y4B4 1467 aa14.23□□□□□ -0.13
NEDD4-210ENST00000513957 ABCA5Q8WWZ7 1642 aa14.21□□□□□ -0.13
NEDD4-210ENST00000513957 PBRM1Q86U86 1689 aa14.2□□□□□ -0.14
NEDD4-210ENST00000513957 DNAJC5Q9H3Z4 198 aa14.17□□□□□ -0.14
NEDD4-210ENST00000513957 AQRO60306 1485 aaKnown RBP eCLIP14.17□□□□□ -0.14
NEDD4-210ENST00000513957 MAGI1Q96QZ7 1491 aaPredicted RBP14.17□□□□□ -0.14
NEDD4-210ENST00000513957 GRIN2BQ13224 1484 aa14.16□□□□□ -0.14
NEDD4-210ENST00000513957 GAPVD1Q14C86 1478 aa14.15□□□□□ -0.14
NEDD4-210ENST00000513957 CHD1O14646 1710 aa14.15□□□□□ -0.14
NEDD4-210ENST00000513957 TDRD9Q8NDG6 1382 aaKnown RBP14.13□□□□□ -0.15
NEDD4-210ENST00000513957 ERICH3Q5RHP9 1530 aa14.1□□□□□ -0.15
NEDD4-210ENST00000513957 SNAPC4Q5SXM2 1469 aa14.1□□□□□ -0.15
NEDD4-210ENST00000513957 SYNJ2O15056 1496 aa14.08□□□□□ -0.16
NEDD4-210ENST00000513957 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
NEDD4-210ENST00000513957 ADAMTS12P58397 1594 aa14.05□□□□□ -0.16
NEDD4-210ENST00000513957 CUL7Q14999 1698 aa14.02□□□□□ -0.16
NEDD4-210ENST00000513957 KIF27Q86VH2 1401 aa14.02□□□□□ -0.16
NEDD4-210ENST00000513957 FHAD1B1AJZ9 1412 aa14□□□□□ -0.17
NEDD4-210ENST00000513957 CLASP1Q7Z460 1538 aa13.98□□□□□ -0.17
NEDD4-210ENST00000513957 GRIN2AQ12879 1464 aa13.98□□□□□ -0.17
NEDD4-210ENST00000513957 CHMP7Q8WUX9 453 aaPredicted RBP13.97□□□□□ -0.17
NEDD4-210ENST00000513957 FBLN2P98095 1184 aa13.94□□□□□ -0.18
NEDD4-210ENST00000513957 NUP160Q12769 1436 aa13.92□□□□□ -0.18
NEDD4-210ENST00000513957 RIMBP3CA6NJZ7 1639 aa13.91□□□□□ -0.18
NEDD4-210ENST00000513957 RIMBP3BA6NNM3 1639 aa13.91□□□□□ -0.18
NEDD4-210ENST00000513957 RIMBP3Q9UFD9 1639 aa13.91□□□□□ -0.18
NEDD4-210ENST00000513957 ARHGEF11O15085 1522 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms