RNA–Protein interactions for RNA: ENST00000513942.5

SGCA-210, Transcript of sarcoglycan alpha, humanhuman

TSL 3

Gene SGCA, Length 734 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCA-210ENST00000513942 NISCHQ9Y2I1 1504 aa37.22■■■■□ 3.55
SGCA-210ENST00000513942 ABCC9O60706 1549 aa33.94■■■■□ 3.02
SGCA-210ENST00000513942 CCDC180Q9P1Z9 1646 aa33.64■■■□□ 2.98
SGCA-210ENST00000513942 RB1CC1Q8TDY2 1594 aa32.17■■■□□ 2.74
SGCA-210ENST00000513942 DNAJC5BQ9UF47 199 aa32.09■■■□□ 2.73
SGCA-210ENST00000513942 NACADO15069 1562 aa31.84■■■□□ 2.69
SGCA-210ENST00000513942 UNC13AQ9UPW8 1703 aa31.51■■■□□ 2.63
SGCA-210ENST00000513942 DCAF8L2P0C7V8 631 aa31.5■■■□□ 2.63
SGCA-210ENST00000513942 PABPN1Q86U42 306 aaKnown RBP eCLIP31.47■■■□□ 2.63
SGCA-210ENST00000513942 MYO15BQ96JP2 1530 aa31.27■■■□□ 2.6
SGCA-210ENST00000513942 BICRAQ9NZM4 1560 aa31.24■■■□□ 2.59
SGCA-210ENST00000513942 ZCCHC6Q5VYS8 1495 aaKnown RBP30.79■■■□□ 2.52
SGCA-210ENST00000513942 SHROOM4Q9ULL8 1493 aa30.79■■■□□ 2.52
SGCA-210ENST00000513942 DCAF1Q9Y4B6 1507 aa30.73■■■□□ 2.51
SGCA-210ENST00000513942 CC2D2AQ9P2K1 1620 aa30.67■■■□□ 2.5
SGCA-210ENST00000513942 CECR2Q9BXF3 1484 aa30.61■■■□□ 2.49
SGCA-210ENST00000513942 SCRIBQ14160 1630 aa30.61■■■□□ 2.49
SGCA-210ENST00000513942 EIF4G1Q04637 1599 aaKnown RBP30.51■■■□□ 2.47
SGCA-210ENST00000513942 DNAJC5Q9H3Z4 198 aa29.74■■■□□ 2.35
SGCA-210ENST00000513942 CUX2O14529 1486 aa29.42■■■□□ 2.3
SGCA-210ENST00000513942 NCAPD3P42695 1498 aa29.36■■■□□ 2.29
SGCA-210ENST00000513942 ERCC6Q03468 1493 aa29.34■■■□□ 2.29
SGCA-210ENST00000513942 ATAD2BQ9ULI0 1458 aa29.23■■■□□ 2.27
SGCA-210ENST00000513942 HMGXB3Q12766 1538 aa29.17■■■□□ 2.26
SGCA-210ENST00000513942 SMARCA2P51531 1590 aa29.16■■■□□ 2.26
SGCA-210ENST00000513942 SMARCA4P51532 1647 aa29.16■■■□□ 2.26
SGCA-210ENST00000513942 NESP48681 1621 aa29.05■■■□□ 2.24
SGCA-210ENST00000513942 BAZ1BQ9UIG0 1483 aaKnown RBP28.95■■■□□ 2.22
SGCA-210ENST00000513942 BAZ1AQ9NRL2 1556 aaPredicted RBP28.94■■■□□ 2.22
SGCA-210ENST00000513942 THOC2Q8NI27 1593 aaKnown RBP28.88■■■□□ 2.21
SGCA-210ENST00000513942 PEG3Q9GZU2 1588 aa28.87■■■□□ 2.21
SGCA-210ENST00000513942 LAMC3Q9Y6N6 1575 aa28.81■■■□□ 2.2
SGCA-210ENST00000513942 KIF21AQ7Z4S6 1674 aa28.73■■■□□ 2.19
SGCA-210ENST00000513942 MROH2BQ7Z745 1585 aa28.68■■■□□ 2.18
SGCA-210ENST00000513942 PDS5BQ9NTI5 1447 aa28.61■■■□□ 2.17
SGCA-210ENST00000513942 CADPSQ9ULU8 1353 aa28.44■■■□□ 2.14
SGCA-210ENST00000513942 MRC2Q9UBG0 1479 aa28.42■■■□□ 2.14
SGCA-210ENST00000513942 WDR62O43379 1518 aa28.38■■■□□ 2.13
SGCA-210ENST00000513942 WIZO95785 1651 aa28.35■■■□□ 2.13
SGCA-210ENST00000513942 TRIM41Q8WV44 630 aa28.31■■■□□ 2.12
SGCA-210ENST00000513942 CEP164Q9UPV0 1460 aa28.23■■■□□ 2.11
SGCA-210ENST00000513942 FANCD2Q9BXW9 1451 aa28.15■■■□□ 2.1
SGCA-210ENST00000513942 CFTRP13569 1480 aa28.06■■■□□ 2.08
SGCA-210ENST00000513942 TOP2AP11388 1531 aaKnown RBP27.97■■■□□ 2.07
SGCA-210ENST00000513942 URB2Q14146 1524 aaKnown RBP27.95■■■□□ 2.06
SGCA-210ENST00000513942 OSCARQ8IYS5 282 aa27.93■■■□□ 2.06
SGCA-210ENST00000513942 RSF1Q96T23 1441 aaPredicted RBP27.92■■■□□ 2.06
SGCA-210ENST00000513942 PRDM2Q13029 1718 aa27.88■■■□□ 2.05
SGCA-210ENST00000513942 RIMBP3CA6NJZ7 1639 aa27.71■■■□□ 2.03
SGCA-210ENST00000513942 RIMBP3BA6NNM3 1639 aa27.71■■■□□ 2.03
SGCA-210ENST00000513942 RIMBP3Q9UFD9 1639 aa27.71■■■□□ 2.03
SGCA-210ENST00000513942 IFT140Q96RY7 1462 aa27.67■■■□□ 2.02
SGCA-210ENST00000513942 ZNF608Q9ULD9 1512 aaPredicted RBP27.67■■■□□ 2.02
SGCA-210ENST00000513942 CCDC88BA6NC98 1476 aa27.6■■■□□ 2.01
SGCA-210ENST00000513942 TOPBP1Q92547 1522 aa27.59■■■□□ 2.01
SGCA-210ENST00000513942 ARHGEF11O15085 1522 aa27.57■■■□□ 2
SGCA-210ENST00000513942 EIF4G3O43432 1585 aaKnown RBP27.56■■■□□ 2
SGCA-210ENST00000513942 ABCC8Q09428 1581 aa27.48■■□□□ 1.99
SGCA-210ENST00000513942 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
SGCA-210ENST00000513942 CHD1O14646 1710 aa27.44■■□□□ 1.98
SGCA-210ENST00000513942 TARBP1Q13395 1621 aaKnown RBP27.39■■□□□ 1.98
SGCA-210ENST00000513942 AQRO60306 1485 aaKnown RBP eCLIP27.34■■□□□ 1.97
SGCA-210ENST00000513942 CYB5RLQ6IPT4 315 aa27.31■■□□□ 1.96
SGCA-210ENST00000513942 POLA1P09884 1462 aaPredicted RBP27.28■■□□□ 1.96
SGCA-210ENST00000513942 ARAP1Q96P48 1450 aa27.27■■□□□ 1.96
SGCA-210ENST00000513942 FBLN2P98095 1184 aa27.21■■□□□ 1.95
SGCA-210ENST00000513942 RAD54L2Q9Y4B4 1467 aa27.17■■□□□ 1.94
SGCA-210ENST00000513942 TRHP20396 242 aaPredicted RBP27.14■■□□□ 1.94
SGCA-210ENST00000513942 SOGA1O94964 1423 aa27.11■■□□□ 1.93
SGCA-210ENST00000513942 TDRD9Q8NDG6 1382 aaKnown RBP27.1■■□□□ 1.93
SGCA-210ENST00000513942 WDR97A6NE52 1622 aa27.1■■□□□ 1.93
SGCA-210ENST00000513942 SNAPC4Q5SXM2 1469 aa27.09■■□□□ 1.93
SGCA-210ENST00000513942 CLASP1Q7Z460 1538 aa27.07■■□□□ 1.92
SGCA-210ENST00000513942 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
SGCA-210ENST00000513942 SYNJ1O43426 1573 aa27.02■■□□□ 1.92
SGCA-210ENST00000513942 MAGI1Q96QZ7 1491 aaPredicted RBP27■■□□□ 1.91
SGCA-210ENST00000513942 CUX1P39880 1505 aa26.97■■□□□ 1.91
SGCA-210ENST00000513942 CHMP7Q8WUX9 453 aaPredicted RBP26.95■■□□□ 1.9
SGCA-210ENST00000513942 GRIN2BQ13224 1484 aa26.94■■□□□ 1.9
SGCA-210ENST00000513942 SYNJ2O15056 1496 aa26.91■■□□□ 1.9
SGCA-210ENST00000513942 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
SGCA-210ENST00000513942 GAPVD1Q14C86 1478 aa26.8■■□□□ 1.88
SGCA-210ENST00000513942 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
SGCA-210ENST00000513942 ABCA10Q8WWZ4 1543 aa26.73■■□□□ 1.87
SGCA-210ENST00000513942 AEBP2Q6ZN18 517 aaPredicted RBP26.63■■□□□ 1.85
SGCA-210ENST00000513942 GRIN2AQ12879 1464 aa26.62■■□□□ 1.85
SGCA-210ENST00000513942 ERCC6L2Q5T890 1561 aa26.61■■□□□ 1.85
SGCA-210ENST00000513942 ADAMTS12P58397 1594 aa26.6■■□□□ 1.85
SGCA-210ENST00000513942 CEP170Q5SW79 1584 aa26.56■■□□□ 1.84
SGCA-210ENST00000513942 NUP160Q12769 1436 aa26.53■■□□□ 1.84
SGCA-210ENST00000513942 WRNQ14191 1432 aaPredicted RBP eCLIP26.52■■□□□ 1.84
SGCA-210ENST00000513942 SHROOM2Q13796 1616 aa26.5■■□□□ 1.83
SGCA-210ENST00000513942 SUPT5HO00267 1087 aaKnown RBP26.49■■□□□ 1.83
SGCA-210ENST00000513942 BIVM-ERCC5R4GMW8 1640 aa26.49■■□□□ 1.83
SGCA-210ENST00000513942 TOP2BQ02880 1626 aa26.46■■□□□ 1.83
SGCA-210ENST00000513942 FHAD1B1AJZ9 1412 aa26.44■■□□□ 1.82
SGCA-210ENST00000513942 ERICH3Q5RHP9 1530 aa26.39■■□□□ 1.82
SGCA-210ENST00000513942 KIF13AQ9H1H9 1805 aa26.38■■□□□ 1.81
SGCA-210ENST00000513942 PRG4Q92954 1404 aaPredicted RBP26.29■■□□□ 1.8
SGCA-210ENST00000513942 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms