RNA–Protein interactions for RNA: ENST00000513913.5

GRAMD2B-213, Transcript of GRAM domain containing 2B, humanhuman

TSL 4

Gene GRAMD2B, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD2B-213ENST00000513913 NISCHQ9Y2I1 1504 aa58.47■■■■■ 6.95
GRAMD2B-213ENST00000513913 CCDC180Q9P1Z9 1646 aa52.13■■■■■ 5.94
GRAMD2B-213ENST00000513913 ABCC9O60706 1549 aa51.69■■■■■ 5.86
GRAMD2B-213ENST00000513913 RB1CC1Q8TDY2 1594 aa49.35■■■■■ 5.49
GRAMD2B-213ENST00000513913 DCAF8L2P0C7V8 631 aa49.33■■■■■ 5.49
GRAMD2B-213ENST00000513913 NACADO15069 1562 aa49.13■■■■■ 5.46
GRAMD2B-213ENST00000513913 ZCCHC6Q5VYS8 1495 aaKnown RBP48.57■■■■■ 5.37
GRAMD2B-213ENST00000513913 MYO15BQ96JP2 1530 aa48.55■■■■■ 5.36
GRAMD2B-213ENST00000513913 UNC13AQ9UPW8 1703 aa48.38■■■■■ 5.34
GRAMD2B-213ENST00000513913 PABPN1Q86U42 306 aaKnown RBP eCLIP48.3■■■■■ 5.32
GRAMD2B-213ENST00000513913 DCAF1Q9Y4B6 1507 aa48.22■■■■■ 5.31
GRAMD2B-213ENST00000513913 DNAJC5BQ9UF47 199 aa47.95■■■■■ 5.27
GRAMD2B-213ENST00000513913 BICRAQ9NZM4 1560 aa47.93■■■■■ 5.26
GRAMD2B-213ENST00000513913 SCRIBQ14160 1630 aa47.72■■■■■ 5.23
GRAMD2B-213ENST00000513913 SHROOM4Q9ULL8 1493 aa47.13■■■■■ 5.13
GRAMD2B-213ENST00000513913 EIF4G1Q04637 1599 aaKnown RBP46.69■■■■■ 5.07
GRAMD2B-213ENST00000513913 CC2D2AQ9P2K1 1620 aa46.68■■■■■ 5.06
GRAMD2B-213ENST00000513913 CECR2Q9BXF3 1484 aa46.42■■■■■ 5.02
GRAMD2B-213ENST00000513913 SMARCA4P51532 1647 aa45.51■■■■■ 4.88
GRAMD2B-213ENST00000513913 ATAD2BQ9ULI0 1458 aa45.36■■■■■ 4.85
GRAMD2B-213ENST00000513913 NCAPD3P42695 1498 aa45.35■■■■■ 4.85
GRAMD2B-213ENST00000513913 BAZ1AQ9NRL2 1556 aaPredicted RBP45.33■■■■■ 4.85
GRAMD2B-213ENST00000513913 SMARCA2P51531 1590 aa45.22■■■■■ 4.83
GRAMD2B-213ENST00000513913 MROH2BQ7Z745 1585 aa45.13■■■■■ 4.82
GRAMD2B-213ENST00000513913 HMGXB3Q12766 1538 aa45.06■■■■■ 4.8
GRAMD2B-213ENST00000513913 BAZ1BQ9UIG0 1483 aaKnown RBP44.98■■■■■ 4.79
GRAMD2B-213ENST00000513913 PEG3Q9GZU2 1588 aa44.95■■■■■ 4.79
GRAMD2B-213ENST00000513913 WIZO95785 1651 aa44.68■■■■■ 4.74
GRAMD2B-213ENST00000513913 NESP48681 1621 aa44.6■■■■■ 4.73
GRAMD2B-213ENST00000513913 ERCC6Q03468 1493 aa44.53■■■■■ 4.72
GRAMD2B-213ENST00000513913 RSF1Q96T23 1441 aaPredicted RBP44.4■■■■■ 4.7
GRAMD2B-213ENST00000513913 LAMC3Q9Y6N6 1575 aa44.24■■■■■ 4.67
GRAMD2B-213ENST00000513913 CUX2O14529 1486 aa44.11■■■■■ 4.65
GRAMD2B-213ENST00000513913 KIF21AQ7Z4S6 1674 aa44.05■■■■■ 4.64
GRAMD2B-213ENST00000513913 CADPSQ9ULU8 1353 aa44.05■■■■■ 4.64
GRAMD2B-213ENST00000513913 TOP2AP11388 1531 aaKnown RBP44.04■■■■■ 4.64
GRAMD2B-213ENST00000513913 PDS5BQ9NTI5 1447 aa43.98■■■■■ 4.63
GRAMD2B-213ENST00000513913 THOC2Q8NI27 1593 aaKnown RBP43.92■■■■■ 4.62
GRAMD2B-213ENST00000513913 CFTRP13569 1480 aa43.65■■■■■ 4.58
GRAMD2B-213ENST00000513913 CCDC88BA6NC98 1476 aa43.6■■■■■ 4.57
GRAMD2B-213ENST00000513913 FANCD2Q9BXW9 1451 aa43.58■■■■■ 4.57
GRAMD2B-213ENST00000513913 MRC2Q9UBG0 1479 aa43.57■■■■■ 4.57
GRAMD2B-213ENST00000513913 CEP164Q9UPV0 1460 aa43.55■■■■■ 4.56
GRAMD2B-213ENST00000513913 DNAJC5Q9H3Z4 198 aa43.43■■■■■ 4.54
GRAMD2B-213ENST00000513913 WDR62O43379 1518 aa43.43■■■■■ 4.54
GRAMD2B-213ENST00000513913 PRDM2Q13029 1718 aa43.34■■■■■ 4.53
GRAMD2B-213ENST00000513913 URB2Q14146 1524 aaKnown RBP43.2■■■■■ 4.51
GRAMD2B-213ENST00000513913 SUPT5HO00267 1087 aaKnown RBP43.12■■■■■ 4.49
GRAMD2B-213ENST00000513913 TOPBP1Q92547 1522 aa42.82■■■■■ 4.45
GRAMD2B-213ENST00000513913 DNMBPQ6XZF7 1577 aa42.7■■■■■ 4.43
GRAMD2B-213ENST00000513913 ABCC8Q09428 1581 aa42.68■■■■■ 4.42
GRAMD2B-213ENST00000513913 IFT140Q96RY7 1462 aa42.62■■■■■ 4.41
GRAMD2B-213ENST00000513913 ZNF608Q9ULD9 1512 aaPredicted RBP42.6■■■■■ 4.41
GRAMD2B-213ENST00000513913 POLA1P09884 1462 aaPredicted RBP42.43■■■■■ 4.38
GRAMD2B-213ENST00000513913 TARBP1Q13395 1621 aaKnown RBP42.39■■■■■ 4.38
GRAMD2B-213ENST00000513913 CUX1P39880 1505 aa42.36■■■■■ 4.37
GRAMD2B-213ENST00000513913 EIF4G3O43432 1585 aaKnown RBP42.35■■■■■ 4.37
GRAMD2B-213ENST00000513913 RAD54L2Q9Y4B4 1467 aa42.35■■■■■ 4.37
GRAMD2B-213ENST00000513913 OSCARQ8IYS5 282 aa42.31■■■■■ 4.36
GRAMD2B-213ENST00000513913 AQRO60306 1485 aaKnown RBP eCLIP42.3■■■■■ 4.36
GRAMD2B-213ENST00000513913 FGD5Q6ZNL6 1462 aa42.29■■■■■ 4.36
GRAMD2B-213ENST00000513913 SOGA1O94964 1423 aa42.28■■■■■ 4.36
GRAMD2B-213ENST00000513913 TDRD9Q8NDG6 1382 aaKnown RBP42.15■■■■■ 4.34
GRAMD2B-213ENST00000513913 CHD1O14646 1710 aa41.99■■■■■ 4.31
GRAMD2B-213ENST00000513913 FBLN2P98095 1184 aa41.98■■■■■ 4.31
GRAMD2B-213ENST00000513913 TRIM41Q8WV44 630 aa41.98■■■■■ 4.31
GRAMD2B-213ENST00000513913 WDR97A6NE52 1622 aa41.92■■■■■ 4.3
GRAMD2B-213ENST00000513913 WRNQ14191 1432 aaPredicted RBP eCLIP41.87■■■■■ 4.29
GRAMD2B-213ENST00000513913 SYNJ1O43426 1573 aa41.86■■■■■ 4.29
GRAMD2B-213ENST00000513913 SNAPC4Q5SXM2 1469 aa41.85■■■■■ 4.29
GRAMD2B-213ENST00000513913 BIVM-ERCC5R4GMW8 1640 aa41.82■■■■■ 4.29
GRAMD2B-213ENST00000513913 TOP2BQ02880 1626 aa41.81■■■■■ 4.28
GRAMD2B-213ENST00000513913 GRIN2BQ13224 1484 aa41.78■■■■■ 4.28
GRAMD2B-213ENST00000513913 ABCA10Q8WWZ4 1543 aa41.77■■■■■ 4.28
GRAMD2B-213ENST00000513913 GAPVD1Q14C86 1478 aa41.76■■■■■ 4.28
GRAMD2B-213ENST00000513913 PBRM1Q86U86 1689 aa41.75■■■■■ 4.27
GRAMD2B-213ENST00000513913 RIMBP3CA6NJZ7 1639 aa41.72■■■■■ 4.27
GRAMD2B-213ENST00000513913 RIMBP3BA6NNM3 1639 aa41.72■■■■■ 4.27
GRAMD2B-213ENST00000513913 RIMBP3Q9UFD9 1639 aa41.72■■■■■ 4.27
GRAMD2B-213ENST00000513913 CHMP7Q8WUX9 453 aaPredicted RBP41.69■■■■■ 4.26
GRAMD2B-213ENST00000513913 MAGI1Q96QZ7 1491 aaPredicted RBP41.68■■■■■ 4.26
GRAMD2B-213ENST00000513913 ABCA5Q8WWZ7 1642 aa41.68■■■■■ 4.26
GRAMD2B-213ENST00000513913 ARHGEF11O15085 1522 aa41.6■■■■■ 4.25
GRAMD2B-213ENST00000513913 SYNJ2O15056 1496 aa41.56■■■■■ 4.24
GRAMD2B-213ENST00000513913 CLASP1Q7Z460 1538 aa41.41■■■■■ 4.22
GRAMD2B-213ENST00000513913 CYB5RLQ6IPT4 315 aa41.37■■■■■ 4.21
GRAMD2B-213ENST00000513913 ADAMTS12P58397 1594 aa41.33■■■■■ 4.21
GRAMD2B-213ENST00000513913 GRIN2AQ12879 1464 aa41.26■■■■■ 4.2
GRAMD2B-213ENST00000513913 ARAP1Q96P48 1450 aa41.25■■■■■ 4.19
GRAMD2B-213ENST00000513913 ERICH3Q5RHP9 1530 aa41.24■■■■■ 4.19
GRAMD2B-213ENST00000513913 FHAD1B1AJZ9 1412 aa41.21■■■■■ 4.19
GRAMD2B-213ENST00000513913 CEP170Q5SW79 1584 aa41.12■■■■■ 4.17
GRAMD2B-213ENST00000513913 NUP160Q12769 1436 aa41.05■■■■■ 4.16
GRAMD2B-213ENST00000513913 KIF27Q86VH2 1401 aa41.01■■■■■ 4.15
GRAMD2B-213ENST00000513913 IGF1RP08069 1367 aa40.94■■■■■ 4.14
GRAMD2B-213ENST00000513913 ERCC6L2Q5T890 1561 aa40.94■■■■■ 4.14
GRAMD2B-213ENST00000513913 SHROOM2Q13796 1616 aa40.82■■■■■ 4.12
GRAMD2B-213ENST00000513913 CUL7Q14999 1698 aa40.81■■■■■ 4.12
GRAMD2B-213ENST00000513913 TRHP20396 242 aaPredicted RBP40.73■■■■■ 4.11
GRAMD2B-213ENST00000513913 JPH4Q96JJ6 628 aa40.73■■■■■ 4.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms