RNA–Protein interactions for RNA: ENST00000513756.5

PTPN20-229, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-229ENST00000513756 NISCHQ9Y2I1 1504 aa30.82■■■□□ 2.52
PTPN20-229ENST00000513756 ABCC9O60706 1549 aa28.37■■■□□ 2.13
PTPN20-229ENST00000513756 CCDC180Q9P1Z9 1646 aa27.88■■■□□ 2.05
PTPN20-229ENST00000513756 DNAJC5BQ9UF47 199 aa27.04■■□□□ 1.92
PTPN20-229ENST00000513756 RB1CC1Q8TDY2 1594 aa26.82■■□□□ 1.88
PTPN20-229ENST00000513756 NACADO15069 1562 aa26.51■■□□□ 1.83
PTPN20-229ENST00000513756 PABPN1Q86U42 306 aaKnown RBP eCLIP26.34■■□□□ 1.81
PTPN20-229ENST00000513756 DCAF8L2P0C7V8 631 aa26.29■■□□□ 1.8
PTPN20-229ENST00000513756 UNC13AQ9UPW8 1703 aa26.12■■□□□ 1.77
PTPN20-229ENST00000513756 BICRAQ9NZM4 1560 aa25.99■■□□□ 1.75
PTPN20-229ENST00000513756 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
PTPN20-229ENST00000513756 SHROOM4Q9ULL8 1493 aa25.67■■□□□ 1.7
PTPN20-229ENST00000513756 CECR2Q9BXF3 1484 aa25.64■■□□□ 1.69
PTPN20-229ENST00000513756 CC2D2AQ9P2K1 1620 aa25.59■■□□□ 1.69
PTPN20-229ENST00000513756 DCAF1Q9Y4B6 1507 aa25.44■■□□□ 1.66
PTPN20-229ENST00000513756 EIF4G1Q04637 1599 aaKnown RBP25.42■■□□□ 1.66
PTPN20-229ENST00000513756 ZCCHC6Q5VYS8 1495 aaKnown RBP25.4■■□□□ 1.66
PTPN20-229ENST00000513756 SCRIBQ14160 1630 aa25.34■■□□□ 1.65
PTPN20-229ENST00000513756 DNAJC5Q9H3Z4 198 aa25.29■■□□□ 1.64
PTPN20-229ENST00000513756 CUX2O14529 1486 aa24.71■■□□□ 1.55
PTPN20-229ENST00000513756 ERCC6Q03468 1493 aa24.58■■□□□ 1.53
PTPN20-229ENST00000513756 NCAPD3P42695 1498 aa24.47■■□□□ 1.51
PTPN20-229ENST00000513756 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
PTPN20-229ENST00000513756 SMARCA2P51531 1590 aa24.24■■□□□ 1.47
PTPN20-229ENST00000513756 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
PTPN20-229ENST00000513756 NESP48681 1621 aa24.2■■□□□ 1.46
PTPN20-229ENST00000513756 SMARCA4P51532 1647 aa24.13■■□□□ 1.45
PTPN20-229ENST00000513756 THOC2Q8NI27 1593 aaKnown RBP24.06■■□□□ 1.44
PTPN20-229ENST00000513756 BAZ1BQ9UIG0 1483 aaKnown RBP24.06■■□□□ 1.44
PTPN20-229ENST00000513756 LAMC3Q9Y6N6 1575 aa24■■□□□ 1.43
PTPN20-229ENST00000513756 BAZ1AQ9NRL2 1556 aaPredicted RBP23.97■■□□□ 1.43
PTPN20-229ENST00000513756 TRIM41Q8WV44 630 aa23.96■■□□□ 1.43
PTPN20-229ENST00000513756 PDS5BQ9NTI5 1447 aa23.93■■□□□ 1.42
PTPN20-229ENST00000513756 PEG3Q9GZU2 1588 aa23.91■■□□□ 1.42
PTPN20-229ENST00000513756 KIF21AQ7Z4S6 1674 aa23.87■■□□□ 1.41
PTPN20-229ENST00000513756 CADPSQ9ULU8 1353 aa23.72■■□□□ 1.39
PTPN20-229ENST00000513756 MROH2BQ7Z745 1585 aa23.7■■□□□ 1.38
PTPN20-229ENST00000513756 MRC2Q9UBG0 1479 aa23.7■■□□□ 1.38
PTPN20-229ENST00000513756 WDR62O43379 1518 aa23.64■■□□□ 1.38
PTPN20-229ENST00000513756 OSCARQ8IYS5 282 aa23.54■■□□□ 1.36
PTPN20-229ENST00000513756 CEP164Q9UPV0 1460 aa23.51■■□□□ 1.35
PTPN20-229ENST00000513756 FANCD2Q9BXW9 1451 aa23.43■■□□□ 1.34
PTPN20-229ENST00000513756 WIZO95785 1651 aa23.39■■□□□ 1.34
PTPN20-229ENST00000513756 CFTRP13569 1480 aa23.32■■□□□ 1.32
PTPN20-229ENST00000513756 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
PTPN20-229ENST00000513756 RIMBP3CA6NJZ7 1639 aa23.2■■□□□ 1.3
PTPN20-229ENST00000513756 RIMBP3BA6NNM3 1639 aa23.2■■□□□ 1.3
PTPN20-229ENST00000513756 RIMBP3Q9UFD9 1639 aa23.2■■□□□ 1.3
PTPN20-229ENST00000513756 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
PTPN20-229ENST00000513756 ARHGEF11O15085 1522 aa23.08■■□□□ 1.29
PTPN20-229ENST00000513756 IFT140Q96RY7 1462 aa23.07■■□□□ 1.28
PTPN20-229ENST00000513756 RSF1Q96T23 1441 aaPredicted RBP23.05■■□□□ 1.28
PTPN20-229ENST00000513756 ZNF608Q9ULD9 1512 aaPredicted RBP23.03■■□□□ 1.28
PTPN20-229ENST00000513756 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
PTPN20-229ENST00000513756 CYB5RLQ6IPT4 315 aa22.99■■□□□ 1.27
PTPN20-229ENST00000513756 TRHP20396 242 aaPredicted RBP22.93■■□□□ 1.26
PTPN20-229ENST00000513756 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
PTPN20-229ENST00000513756 ABCC8Q09428 1581 aa22.9■■□□□ 1.26
PTPN20-229ENST00000513756 EIF4G3O43432 1585 aaKnown RBP22.88■■□□□ 1.25
PTPN20-229ENST00000513756 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
PTPN20-229ENST00000513756 ARAP1Q96P48 1450 aa22.81■■□□□ 1.24
PTPN20-229ENST00000513756 CHD1O14646 1710 aa22.8■■□□□ 1.24
PTPN20-229ENST00000513756 FBLN2P98095 1184 aa22.79■■□□□ 1.24
PTPN20-229ENST00000513756 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
PTPN20-229ENST00000513756 AQRO60306 1485 aaKnown RBP eCLIP22.78■■□□□ 1.24
PTPN20-229ENST00000513756 TARBP1Q13395 1621 aaKnown RBP22.73■■□□□ 1.23
PTPN20-229ENST00000513756 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
PTPN20-229ENST00000513756 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.21
PTPN20-229ENST00000513756 SOGA1O94964 1423 aa22.57■■□□□ 1.2
PTPN20-229ENST00000513756 TDRD9Q8NDG6 1382 aaKnown RBP22.56■■□□□ 1.2
PTPN20-229ENST00000513756 RAD54L2Q9Y4B4 1467 aa22.55■■□□□ 1.2
PTPN20-229ENST00000513756 CHMP7Q8WUX9 453 aaPredicted RBP22.55■■□□□ 1.2
PTPN20-229ENST00000513756 CLASP1Q7Z460 1538 aa22.54■■□□□ 1.2
PTPN20-229ENST00000513756 SNAPC4Q5SXM2 1469 aa22.54■■□□□ 1.2
PTPN20-229ENST00000513756 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
PTPN20-229ENST00000513756 WDR97A6NE52 1622 aa22.53■■□□□ 1.2
PTPN20-229ENST00000513756 MAGI1Q96QZ7 1491 aaPredicted RBP22.48■■□□□ 1.19
PTPN20-229ENST00000513756 GRIN2BQ13224 1484 aa22.43■■□□□ 1.18
PTPN20-229ENST00000513756 FGD5Q6ZNL6 1462 aa22.42■■□□□ 1.18
PTPN20-229ENST00000513756 SYNJ2O15056 1496 aa22.41■■□□□ 1.18
PTPN20-229ENST00000513756 GAPVD1Q14C86 1478 aa22.36■■□□□ 1.17
PTPN20-229ENST00000513756 CUX1P39880 1505 aa22.31■■□□□ 1.16
PTPN20-229ENST00000513756 PBRM1Q86U86 1689 aa22.26■■□□□ 1.15
PTPN20-229ENST00000513756 ABCA10Q8WWZ4 1543 aa22.16■■□□□ 1.14
PTPN20-229ENST00000513756 ABCA5Q8WWZ7 1642 aa22.14■■□□□ 1.14
PTPN20-229ENST00000513756 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
PTPN20-229ENST00000513756 ERCC6L2Q5T890 1561 aa22.12■■□□□ 1.13
PTPN20-229ENST00000513756 CEP170Q5SW79 1584 aa22.08■■□□□ 1.13
PTPN20-229ENST00000513756 NUP160Q12769 1436 aa22.06■■□□□ 1.12
PTPN20-229ENST00000513756 ADAMTS12P58397 1594 aa22.02■■□□□ 1.12
PTPN20-229ENST00000513756 SHROOM2Q13796 1616 aa22.01■■□□□ 1.11
PTPN20-229ENST00000513756 WRNQ14191 1432 aaPredicted RBP eCLIP22■■□□□ 1.11
PTPN20-229ENST00000513756 KIF13AQ9H1H9 1805 aa21.99■■□□□ 1.11
PTPN20-229ENST00000513756 FHAD1B1AJZ9 1412 aa21.98■■□□□ 1.11
PTPN20-229ENST00000513756 PRG4Q92954 1404 aaPredicted RBP21.91■■□□□ 1.1
PTPN20-229ENST00000513756 NPM1P06748 294 aaKnown RBP eCLIP21.9■■□□□ 1.1
PTPN20-229ENST00000513756 FAM69CQ0P6D2 419 aa21.9■■□□□ 1.1
PTPN20-229ENST00000513756 ERICH3Q5RHP9 1530 aa21.89■■□□□ 1.09
PTPN20-229ENST00000513756 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
PTPN20-229ENST00000513756 ABCC10Q5T3U5 1492 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms