RNA–Protein interactions for RNA: ENST00000513725.1

SFXN1-210, Transcript of sideroflexin 1, humanhuman

TSL 2

Gene SFXN1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFXN1-210ENST00000513725 NISCHQ9Y2I1 1504 aa31.1■■■□□ 2.57
SFXN1-210ENST00000513725 ABCC9O60706 1549 aa29.7■■■□□ 2.34
SFXN1-210ENST00000513725 DNAJC5BQ9UF47 199 aa28.96■■■□□ 2.23
SFXN1-210ENST00000513725 CCDC180Q9P1Z9 1646 aa28.47■■■□□ 2.15
SFXN1-210ENST00000513725 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
SFXN1-210ENST00000513725 DNAJC5Q9H3Z4 198 aa27.59■■■□□ 2.01
SFXN1-210ENST00000513725 PABPN1Q86U42 306 aaKnown RBP eCLIP27.46■■□□□ 1.99
SFXN1-210ENST00000513725 NACADO15069 1562 aa27.24■■□□□ 1.95
SFXN1-210ENST00000513725 UNC13AQ9UPW8 1703 aa27.02■■□□□ 1.92
SFXN1-210ENST00000513725 CECR2Q9BXF3 1484 aa26.91■■□□□ 1.9
SFXN1-210ENST00000513725 BICRAQ9NZM4 1560 aa26.91■■□□□ 1.9
SFXN1-210ENST00000513725 DCAF8L2P0C7V8 631 aa26.87■■□□□ 1.89
SFXN1-210ENST00000513725 CC2D2AQ9P2K1 1620 aa26.76■■□□□ 1.87
SFXN1-210ENST00000513725 SHROOM4Q9ULL8 1493 aa26.49■■□□□ 1.83
SFXN1-210ENST00000513725 MYO15BQ96JP2 1530 aa26.44■■□□□ 1.82
SFXN1-210ENST00000513725 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
SFXN1-210ENST00000513725 CUX2O14529 1486 aa26.16■■□□□ 1.78
SFXN1-210ENST00000513725 TRIM41Q8WV44 630 aa25.87■■□□□ 1.73
SFXN1-210ENST00000513725 SCRIBQ14160 1630 aa25.84■■□□□ 1.73
SFXN1-210ENST00000513725 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
SFXN1-210ENST00000513725 DCAF1Q9Y4B6 1507 aa25.63■■□□□ 1.69
SFXN1-210ENST00000513725 ZCCHC6Q5VYS8 1495 aaKnown RBP25.49■■□□□ 1.67
SFXN1-210ENST00000513725 NCAPD3P42695 1498 aa25.15■■□□□ 1.62
SFXN1-210ENST00000513725 THOC2Q8NI27 1593 aaKnown RBP25.13■■□□□ 1.61
SFXN1-210ENST00000513725 NESP48681 1621 aa25.12■■□□□ 1.61
SFXN1-210ENST00000513725 SMARCA2P51531 1590 aa24.89■■□□□ 1.58
SFXN1-210ENST00000513725 ATAD2BQ9ULI0 1458 aa24.88■■□□□ 1.57
SFXN1-210ENST00000513725 HMGXB3Q12766 1538 aa24.84■■□□□ 1.57
SFXN1-210ENST00000513725 LAMC3Q9Y6N6 1575 aa24.8■■□□□ 1.56
SFXN1-210ENST00000513725 OSCARQ8IYS5 282 aa24.78■■□□□ 1.56
SFXN1-210ENST00000513725 BAZ1AQ9NRL2 1556 aaPredicted RBP24.76■■□□□ 1.55
SFXN1-210ENST00000513725 KIF21AQ7Z4S6 1674 aa24.75■■□□□ 1.55
SFXN1-210ENST00000513725 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
SFXN1-210ENST00000513725 AEBP2Q6ZN18 517 aaPredicted RBP24.72■■□□□ 1.55
SFXN1-210ENST00000513725 BAZ1BQ9UIG0 1483 aaKnown RBP24.59■■□□□ 1.53
SFXN1-210ENST00000513725 MRC2Q9UBG0 1479 aa24.56■■□□□ 1.52
SFXN1-210ENST00000513725 RIMBP3CA6NJZ7 1639 aa24.53■■□□□ 1.52
SFXN1-210ENST00000513725 RIMBP3BA6NNM3 1639 aa24.53■■□□□ 1.52
SFXN1-210ENST00000513725 RIMBP3Q9UFD9 1639 aa24.53■■□□□ 1.52
SFXN1-210ENST00000513725 WDR62O43379 1518 aa24.52■■□□□ 1.52
SFXN1-210ENST00000513725 SMARCA4P51532 1647 aa24.52■■□□□ 1.52
SFXN1-210ENST00000513725 TRHP20396 242 aaPredicted RBP24.45■■□□□ 1.5
SFXN1-210ENST00000513725 CADPSQ9ULU8 1353 aa24.34■■□□□ 1.49
SFXN1-210ENST00000513725 ARHGEF11O15085 1522 aa24.33■■□□□ 1.49
SFXN1-210ENST00000513725 PEG3Q9GZU2 1588 aa24.3■■□□□ 1.48
SFXN1-210ENST00000513725 CYB5RLQ6IPT4 315 aa24.28■■□□□ 1.48
SFXN1-210ENST00000513725 CEP164Q9UPV0 1460 aa24.21■■□□□ 1.47
SFXN1-210ENST00000513725 FANCD2Q9BXW9 1451 aa24.06■■□□□ 1.44
SFXN1-210ENST00000513725 ARAP1Q96P48 1450 aa23.99■■□□□ 1.43
SFXN1-210ENST00000513725 MROH2BQ7Z745 1585 aa23.93■■□□□ 1.42
SFXN1-210ENST00000513725 URB2Q14146 1524 aaKnown RBP23.91■■□□□ 1.42
SFXN1-210ENST00000513725 ZNF608Q9ULD9 1512 aaPredicted RBP23.82■■□□□ 1.4
SFXN1-210ENST00000513725 RSF1Q96T23 1441 aaPredicted RBP23.81■■□□□ 1.4
SFXN1-210ENST00000513725 ILDR1Q86SU0 546 aaPredicted RBP23.8■■□□□ 1.4
SFXN1-210ENST00000513725 CFTRP13569 1480 aa23.78■■□□□ 1.4
SFXN1-210ENST00000513725 IFT140Q96RY7 1462 aa23.78■■□□□ 1.4
SFXN1-210ENST00000513725 CHD1O14646 1710 aa23.68■■□□□ 1.38
SFXN1-210ENST00000513725 EIF4G3O43432 1585 aaKnown RBP23.63■■□□□ 1.37
SFXN1-210ENST00000513725 FBLN2P98095 1184 aa23.63■■□□□ 1.37
SFXN1-210ENST00000513725 WIZO95785 1651 aa23.57■■□□□ 1.36
SFXN1-210ENST00000513725 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.359e-7■■■■□ 23.8
SFXN1-210ENST00000513725 TOPBP1Q92547 1522 aa23.44■■□□□ 1.34
SFXN1-210ENST00000513725 PRDM2Q13029 1718 aa23.41■■□□□ 1.34
SFXN1-210ENST00000513725 CLASP1Q7Z460 1538 aa23.39■■□□□ 1.34
SFXN1-210ENST00000513725 ABCC8Q09428 1581 aa23.37■■□□□ 1.33
SFXN1-210ENST00000513725 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
SFXN1-210ENST00000513725 TARBP1Q13395 1621 aaKnown RBP23.31■■□□□ 1.32
SFXN1-210ENST00000513725 GAPVD1Q14C86 1478 aa23.29■■□□□ 1.32
SFXN1-210ENST00000513725 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
SFXN1-210ENST00000513725 DNMBPQ6XZF7 1577 aa23.25■■□□□ 1.31
SFXN1-210ENST00000513725 TOP2AP11388 1531 aaKnown RBP23.22■■□□□ 1.31
SFXN1-210ENST00000513725 SNAPC4Q5SXM2 1469 aa23.19■■□□□ 1.3
SFXN1-210ENST00000513725 KDM4FA0A1W2PPD8 638 aa23.19■■□□□ 1.3
SFXN1-210ENST00000513725 TDRD9Q8NDG6 1382 aaKnown RBP23.13■■□□□ 1.29
SFXN1-210ENST00000513725 POLA1P09884 1462 aaPredicted RBP23.12■■□□□ 1.29
SFXN1-210ENST00000513725 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
SFXN1-210ENST00000513725 KIF13AQ9H1H9 1805 aa23.05■■□□□ 1.28
SFXN1-210ENST00000513725 RAD54L2Q9Y4B4 1467 aa23.05■■□□□ 1.28
SFXN1-210ENST00000513725 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
SFXN1-210ENST00000513725 WDR97A6NE52 1622 aa23.04■■□□□ 1.28
SFXN1-210ENST00000513725 SOGA1O94964 1423 aa23.03■■□□□ 1.28
SFXN1-210ENST00000513725 GRIN2BQ13224 1484 aa22.98■■□□□ 1.27
SFXN1-210ENST00000513725 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
SFXN1-210ENST00000513725 ERCC6L2Q5T890 1561 aa22.91■■□□□ 1.26
SFXN1-210ENST00000513725 FAM69CQ0P6D2 419 aa22.88■■□□□ 1.25
SFXN1-210ENST00000513725 KDM6BO15054 1643 aa22.86■■□□□ 1.25
SFXN1-210ENST00000513725 FBXO41Q8TF61 875 aa22.83■■□□□ 1.25
SFXN1-210ENST00000513725 ABCC10Q5T3U5 1492 aa22.81■■□□□ 1.24
SFXN1-210ENST00000513725 FGD5Q6ZNL6 1462 aa22.8■■□□□ 1.24
SFXN1-210ENST00000513725 HECW2Q9P2P5 1572 aa22.79■■□□□ 1.24
SFXN1-210ENST00000513725 CEP170Q5SW79 1584 aa22.78■■□□□ 1.24
SFXN1-210ENST00000513725 PBRM1Q86U86 1689 aa22.75■■□□□ 1.23
SFXN1-210ENST00000513725 NPM1P06748 294 aaKnown RBP eCLIP22.7■■□□□ 1.22
SFXN1-210ENST00000513725 ADGRL1O94910 1474 aa22.7■■□□□ 1.22
SFXN1-210ENST00000513725 DIP2BQ9P265 1576 aa22.69■■□□□ 1.22
SFXN1-210ENST00000513725 GRIN2AQ12879 1464 aa22.66■■□□□ 1.22
SFXN1-210ENST00000513725 SHROOM2Q13796 1616 aa22.65■■□□□ 1.22
SFXN1-210ENST00000513725 MAPKBP1O60336 1514 aa22.65■■□□□ 1.22
SFXN1-210ENST00000513725 NUP160Q12769 1436 aa22.62■■□□□ 1.21
SFXN1-210ENST00000513725 LMTK3Q96Q04 1460 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms