RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 NISCHQ9Y2I1 1504 aa23.89■■□□□ 1.42
RNF4-221ENST00000513643 CCDC180Q9P1Z9 1646 aa21.18■□□□□ 0.98
RNF4-221ENST00000513643 ABCC9O60706 1549 aa20.8■□□□□ 0.92
RNF4-221ENST00000513643 NACADO15069 1562 aa20■□□□□ 0.79
RNF4-221ENST00000513643 RB1CC1Q8TDY2 1594 aa19.98■□□□□ 0.79
RNF4-221ENST00000513643 MYO15BQ96JP2 1530 aa19.95■□□□□ 0.78
RNF4-221ENST00000513643 ZCCHC6Q5VYS8 1495 aaKnown RBP19.88■□□□□ 0.77
RNF4-221ENST00000513643 DCAF8L2P0C7V8 631 aa19.85■□□□□ 0.77
RNF4-221ENST00000513643 DCAF1Q9Y4B6 1507 aa19.81■□□□□ 0.76
RNF4-221ENST00000513643 UNC13AQ9UPW8 1703 aa19.48■□□□□ 0.71
RNF4-221ENST00000513643 PABPN1Q86U42 306 aaKnown RBP eCLIP19.47■□□□□ 0.71
RNF4-221ENST00000513643 BICRAQ9NZM4 1560 aa19.46■□□□□ 0.71
RNF4-221ENST00000513643 DNAJC5BQ9UF47 199 aa19.31■□□□□ 0.68
RNF4-221ENST00000513643 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
RNF4-221ENST00000513643 SHROOM4Q9ULL8 1493 aa19.26■□□□□ 0.67
RNF4-221ENST00000513643 EIF4G1Q04637 1599 aaKnown RBP18.9■□□□□ 0.62
RNF4-221ENST00000513643 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
RNF4-221ENST00000513643 CECR2Q9BXF3 1484 aa18.73■□□□□ 0.59
RNF4-221ENST00000513643 NCAPD3P42695 1498 aa18.52■□□□□ 0.56
RNF4-221ENST00000513643 SMARCA4P51532 1647 aa18.49■□□□□ 0.55
RNF4-221ENST00000513643 ATAD2BQ9ULI0 1458 aa18.48■□□□□ 0.55
RNF4-221ENST00000513643 BAZ1AQ9NRL2 1556 aaPredicted RBP18.47■□□□□ 0.55
RNF4-221ENST00000513643 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
RNF4-221ENST00000513643 PEG3Q9GZU2 1588 aa18.4■□□□□ 0.54
RNF4-221ENST00000513643 SMARCA2P51531 1590 aa18.39■□□□□ 0.53
RNF4-221ENST00000513643 HMGXB3Q12766 1538 aa18.35■□□□□ 0.53
RNF4-221ENST00000513643 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
RNF4-221ENST00000513643 RSF1Q96T23 1441 aaPredicted RBP18.21■□□□□ 0.51
RNF4-221ENST00000513643 WIZO95785 1651 aa18.12■□□□□ 0.49
RNF4-221ENST00000513643 NESP48681 1621 aa18.01■□□□□ 0.47
RNF4-221ENST00000513643 TOP2AP11388 1531 aaKnown RBP17.96■□□□□ 0.47
RNF4-221ENST00000513643 CADPSQ9ULU8 1353 aa17.95■□□□□ 0.46
RNF4-221ENST00000513643 LAMC3Q9Y6N6 1575 aa17.95■□□□□ 0.46
RNF4-221ENST00000513643 ERCC6Q03468 1493 aa17.88■□□□□ 0.45
RNF4-221ENST00000513643 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
RNF4-221ENST00000513643 CFTRP13569 1480 aa17.83■□□□□ 0.45
RNF4-221ENST00000513643 CUX2O14529 1486 aa17.82■□□□□ 0.44
RNF4-221ENST00000513643 CCDC88BA6NC98 1476 aa17.8■□□□□ 0.44
RNF4-221ENST00000513643 THOC2Q8NI27 1593 aaKnown RBP17.73■□□□□ 0.43
RNF4-221ENST00000513643 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.42
RNF4-221ENST00000513643 FANCD2Q9BXW9 1451 aa17.69■□□□□ 0.42
RNF4-221ENST00000513643 MRC2Q9UBG0 1479 aa17.65■□□□□ 0.42
RNF4-221ENST00000513643 CEP164Q9UPV0 1460 aa17.63■□□□□ 0.41
RNF4-221ENST00000513643 WDR62O43379 1518 aa17.62■□□□□ 0.41
RNF4-221ENST00000513643 SUPT5HO00267 1087 aaKnown RBP17.56■□□□□ 0.4
RNF4-221ENST00000513643 URB2Q14146 1524 aaKnown RBP17.54■□□□□ 0.4
RNF4-221ENST00000513643 PRDM2Q13029 1718 aa17.51■□□□□ 0.39
RNF4-221ENST00000513643 DNAJC5Q9H3Z4 198 aa17.42■□□□□ 0.38
RNF4-221ENST00000513643 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
RNF4-221ENST00000513643 TOPBP1Q92547 1522 aa17.4■□□□□ 0.38
RNF4-221ENST00000513643 DNMBPQ6XZF7 1577 aa17.35■□□□□ 0.37
RNF4-221ENST00000513643 IFT140Q96RY7 1462 aa17.32■□□□□ 0.36
RNF4-221ENST00000513643 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
RNF4-221ENST00000513643 CUX1P39880 1505 aa17.25■□□□□ 0.35
RNF4-221ENST00000513643 ZNF608Q9ULD9 1512 aaPredicted RBP17.25■□□□□ 0.35
RNF4-221ENST00000513643 TARBP1Q13395 1621 aaKnown RBP17.22■□□□□ 0.35
RNF4-221ENST00000513643 SOGA1O94964 1423 aa17.19■□□□□ 0.34
RNF4-221ENST00000513643 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
RNF4-221ENST00000513643 RAD54L2Q9Y4B4 1467 aa17.18■□□□□ 0.34
RNF4-221ENST00000513643 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.333e-8■■■■■ 35.1
RNF4-221ENST00000513643 WRNQ14191 1432 aaPredicted RBP eCLIP17.11■□□□□ 0.332e-6■■■■■ 29.9
RNF4-221ENST00000513643 TDRD9Q8NDG6 1382 aaKnown RBP17.1■□□□□ 0.33
RNF4-221ENST00000513643 EIF4G3O43432 1585 aaKnown RBP17.1■□□□□ 0.33
RNF4-221ENST00000513643 OSCARQ8IYS5 282 aa17.08■□□□□ 0.32
RNF4-221ENST00000513643 WDR97A6NE52 1622 aa17.07■□□□□ 0.32
RNF4-221ENST00000513643 TOP2BQ02880 1626 aa17.07■□□□□ 0.32
RNF4-221ENST00000513643 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
RNF4-221ENST00000513643 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
RNF4-221ENST00000513643 SYNJ1O43426 1573 aa17.04■□□□□ 0.32
RNF4-221ENST00000513643 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
RNF4-221ENST00000513643 GAPVD1Q14C86 1478 aa16.97■□□□□ 0.31
RNF4-221ENST00000513643 MAGI1Q96QZ7 1491 aaPredicted RBP16.95■□□□□ 0.3
RNF4-221ENST00000513643 SNAPC4Q5SXM2 1469 aa16.94■□□□□ 0.3
RNF4-221ENST00000513643 ABCA5Q8WWZ7 1642 aa16.94■□□□□ 0.3
RNF4-221ENST00000513643 SYNJ2O15056 1496 aa16.88■□□□□ 0.29
RNF4-221ENST00000513643 FBLN2P98095 1184 aa16.86■□□□□ 0.29
RNF4-221ENST00000513643 CHMP7Q8WUX9 453 aaPredicted RBP16.86■□□□□ 0.29
RNF4-221ENST00000513643 CHD1O14646 1710 aa16.85■□□□□ 0.29
RNF4-221ENST00000513643 ERICH3Q5RHP9 1530 aa16.83■□□□□ 0.28
RNF4-221ENST00000513643 PBRM1Q86U86 1689 aa16.83■□□□□ 0.28
RNF4-221ENST00000513643 FHAD1B1AJZ9 1412 aa16.79■□□□□ 0.28
RNF4-221ENST00000513643 CLASP1Q7Z460 1538 aa16.79■□□□□ 0.28
RNF4-221ENST00000513643 IGF1RP08069 1367 aa16.77■□□□□ 0.28
RNF4-221ENST00000513643 ADAMTS12P58397 1594 aa16.77■□□□□ 0.27
RNF4-221ENST00000513643 ARHGEF11O15085 1522 aa16.76■□□□□ 0.27
RNF4-221ENST00000513643 GRIN2AQ12879 1464 aa16.76■□□□□ 0.27
RNF4-221ENST00000513643 NUP160Q12769 1436 aa16.75■□□□□ 0.27
RNF4-221ENST00000513643 KIF27Q86VH2 1401 aa16.75■□□□□ 0.27
RNF4-221ENST00000513643 RIMBP3CA6NJZ7 1639 aa16.74■□□□□ 0.27
RNF4-221ENST00000513643 RIMBP3BA6NNM3 1639 aa16.74■□□□□ 0.27
RNF4-221ENST00000513643 RIMBP3Q9UFD9 1639 aa16.74■□□□□ 0.27
RNF4-221ENST00000513643 CEP170Q5SW79 1584 aa16.67■□□□□ 0.26
RNF4-221ENST00000513643 TRIM41Q8WV44 630 aa16.65■□□□□ 0.26
RNF4-221ENST00000513643 ARAP1Q96P48 1450 aa16.65■□□□□ 0.26
RNF4-221ENST00000513643 CYB5RLQ6IPT4 315 aa16.62■□□□□ 0.25
RNF4-221ENST00000513643 CARMIL1Q5VZK9 1371 aa16.62■□□□□ 0.25
RNF4-221ENST00000513643 RUSC2Q8N2Y8 1516 aa16.6■□□□□ 0.25
RNF4-221ENST00000513643 CUL7Q14999 1698 aa16.59■□□□□ 0.25
RNF4-221ENST00000513643 SHROOM2Q13796 1616 aa16.58■□□□□ 0.24
RNF4-221ENST00000513643 JPH4Q96JJ6 628 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms