RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 NISCHQ9Y2I1 1504 aa28.15■■■□□ 2.1
DDX41-216ENST00000513562 ABCC9O60706 1549 aa25.83■■□□□ 1.72
DDX41-216ENST00000513562 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
DDX41-216ENST00000513562 DNAJC5BQ9UF47 199 aa24.61■■□□□ 1.53
DDX41-216ENST00000513562 RB1CC1Q8TDY2 1594 aa24.4■■□□□ 1.5
DDX41-216ENST00000513562 NACADO15069 1562 aa24.15■■□□□ 1.46
DDX41-216ENST00000513562 PABPN1Q86U42 306 aaKnown RBP eCLIP23.97■■□□□ 1.431e-6■■■■□ 21
DDX41-216ENST00000513562 DCAF8L2P0C7V8 631 aa23.86■■□□□ 1.41
DDX41-216ENST00000513562 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
DDX41-216ENST00000513562 MYO15BQ96JP2 1530 aa23.73■■□□□ 1.39
DDX41-216ENST00000513562 BICRAQ9NZM4 1560 aa23.72■■□□□ 1.39
DDX41-216ENST00000513562 SHROOM4Q9ULL8 1493 aa23.42■■□□□ 1.34
DDX41-216ENST00000513562 CECR2Q9BXF3 1484 aa23.33■■□□□ 1.33
DDX41-216ENST00000513562 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
DDX41-216ENST00000513562 ZCCHC6Q5VYS8 1495 aaKnown RBP23.27■■□□□ 1.32
DDX41-216ENST00000513562 DCAF1Q9Y4B6 1507 aa23.26■■□□□ 1.31
DDX41-216ENST00000513562 EIF4G1Q04637 1599 aaKnown RBP23.18■■□□□ 1.3
DDX41-216ENST00000513562 SCRIBQ14160 1630 aa23.11■■□□□ 1.29
DDX41-216ENST00000513562 DNAJC5Q9H3Z4 198 aa22.91■■□□□ 1.26
DDX41-216ENST00000513562 CUX2O14529 1486 aa22.47■■□□□ 1.19
DDX41-216ENST00000513562 NCAPD3P42695 1498 aa22.33■■□□□ 1.16
DDX41-216ENST00000513562 ERCC6Q03468 1493 aa22.33■■□□□ 1.16
DDX41-216ENST00000513562 ATAD2BQ9ULI0 1458 aa22.2■■□□□ 1.14
DDX41-216ENST00000513562 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
DDX41-216ENST00000513562 SMARCA2P51531 1590 aa22.09■■□□□ 1.13
DDX41-216ENST00000513562 NESP48681 1621 aa22.06■■□□□ 1.12
DDX41-216ENST00000513562 SMARCA4P51532 1647 aa22.02■■□□□ 1.12
DDX41-216ENST00000513562 THOC2Q8NI27 1593 aaKnown RBP21.94■■□□□ 1.1
DDX41-216ENST00000513562 BAZ1BQ9UIG0 1483 aaKnown RBP21.93■■□□□ 1.1
DDX41-216ENST00000513562 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
DDX41-216ENST00000513562 LAMC3Q9Y6N6 1575 aa21.86■■□□□ 1.09
DDX41-216ENST00000513562 PEG3Q9GZU2 1588 aa21.85■■□□□ 1.09
DDX41-216ENST00000513562 PDS5BQ9NTI5 1447 aa21.76■■□□□ 1.07
DDX41-216ENST00000513562 KIF21AQ7Z4S6 1674 aa21.7■■□□□ 1.06
DDX41-216ENST00000513562 TRIM41Q8WV44 630 aa21.69■■□□□ 1.06
DDX41-216ENST00000513562 MROH2BQ7Z745 1585 aa21.68■■□□□ 1.06
DDX41-216ENST00000513562 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
DDX41-216ENST00000513562 MRC2Q9UBG0 1479 aa21.6■■□□□ 1.05
DDX41-216ENST00000513562 WDR62O43379 1518 aa21.57■■□□□ 1.04
DDX41-216ENST00000513562 CEP164Q9UPV0 1460 aa21.43■■□□□ 1.02
DDX41-216ENST00000513562 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
DDX41-216ENST00000513562 WIZO95785 1651 aa21.34■■□□□ 1.01
DDX41-216ENST00000513562 OSCARQ8IYS5 282 aa21.33■■□□□ 1.01
DDX41-216ENST00000513562 CFTRP13569 1480 aa21.3■■□□□ 1
DDX41-216ENST00000513562 URB2Q14146 1524 aaKnown RBP21.21■□□□□ 0.99
DDX41-216ENST00000513562 TOP2AP11388 1531 aaKnown RBP21.1■□□□□ 0.97
DDX41-216ENST00000513562 RSF1Q96T23 1441 aaPredicted RBP21.1■□□□□ 0.97
DDX41-216ENST00000513562 RIMBP3CA6NJZ7 1639 aa21.08■□□□□ 0.97
DDX41-216ENST00000513562 RIMBP3BA6NNM3 1639 aa21.08■□□□□ 0.97
DDX41-216ENST00000513562 RIMBP3Q9UFD9 1639 aa21.08■□□□□ 0.97
DDX41-216ENST00000513562 IFT140Q96RY7 1462 aa21.02■□□□□ 0.96
DDX41-216ENST00000513562 ARHGEF11O15085 1522 aa21.02■□□□□ 0.96
DDX41-216ENST00000513562 ZNF608Q9ULD9 1512 aaPredicted RBP21.02■□□□□ 0.96
DDX41-216ENST00000513562 TOPBP1Q92547 1522 aa20.91■□□□□ 0.94
DDX41-216ENST00000513562 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
DDX41-216ENST00000513562 CCDC88BA6NC98 1476 aa20.87■□□□□ 0.93
DDX41-216ENST00000513562 EIF4G3O43432 1585 aaKnown RBP20.86■□□□□ 0.93
DDX41-216ENST00000513562 CYB5RLQ6IPT4 315 aa20.85■□□□□ 0.93
DDX41-216ENST00000513562 ABCC8Q09428 1581 aa20.83■□□□□ 0.92
DDX41-216ENST00000513562 ARAP1Q96P48 1450 aa20.79■□□□□ 0.92
DDX41-216ENST00000513562 DNMBPQ6XZF7 1577 aa20.79■□□□□ 0.92
DDX41-216ENST00000513562 AQRO60306 1485 aaKnown RBP eCLIP20.76■□□□□ 0.912e-7■■■■■ 62.1
DDX41-216ENST00000513562 TARBP1Q13395 1621 aaKnown RBP20.75■□□□□ 0.91
DDX41-216ENST00000513562 TRHP20396 242 aaPredicted RBP20.73■□□□□ 0.91
DDX41-216ENST00000513562 CHD1O14646 1710 aa20.71■□□□□ 0.91
DDX41-216ENST00000513562 POLA1P09884 1462 aaPredicted RBP20.68■□□□□ 0.9
DDX41-216ENST00000513562 FBLN2P98095 1184 aa20.67■□□□□ 0.9
DDX41-216ENST00000513562 RAD54L2Q9Y4B4 1467 aa20.59■□□□□ 0.89
DDX41-216ENST00000513562 CLASP1Q7Z460 1538 aa20.57■□□□□ 0.88
DDX41-216ENST00000513562 TDRD9Q8NDG6 1382 aaKnown RBP20.57■□□□□ 0.88
DDX41-216ENST00000513562 SNAPC4Q5SXM2 1469 aa20.56■□□□□ 0.88
DDX41-216ENST00000513562 SOGA1O94964 1423 aa20.55■□□□□ 0.88
DDX41-216ENST00000513562 WDR97A6NE52 1622 aa20.53■□□□□ 0.88
DDX41-216ENST00000513562 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
DDX41-216ENST00000513562 MAGI1Q96QZ7 1491 aaPredicted RBP20.49■□□□□ 0.87
DDX41-216ENST00000513562 CHMP7Q8WUX9 453 aaPredicted RBP20.47■□□□□ 0.87
DDX41-216ENST00000513562 FGD5Q6ZNL6 1462 aa20.47■□□□□ 0.87
DDX41-216ENST00000513562 GRIN2BQ13224 1484 aa20.44■□□□□ 0.86
DDX41-216ENST00000513562 AEBP2Q6ZN18 517 aaPredicted RBP20.43■□□□□ 0.86
DDX41-216ENST00000513562 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
DDX41-216ENST00000513562 CUX1P39880 1505 aa20.4■□□□□ 0.86
DDX41-216ENST00000513562 GAPVD1Q14C86 1478 aa20.37■□□□□ 0.85
DDX41-216ENST00000513562 PBRM1Q86U86 1689 aa20.25■□□□□ 0.83
DDX41-216ENST00000513562 ABCA10Q8WWZ4 1543 aa20.24■□□□□ 0.83
DDX41-216ENST00000513562 ABCA5Q8WWZ7 1642 aa20.23■□□□□ 0.83
DDX41-216ENST00000513562 ERCC6L2Q5T890 1561 aa20.19■□□□□ 0.82
DDX41-216ENST00000513562 GRIN2AQ12879 1464 aa20.18■□□□□ 0.82
DDX41-216ENST00000513562 NUP160Q12769 1436 aa20.16■□□□□ 0.82
DDX41-216ENST00000513562 CEP170Q5SW79 1584 aa20.13■□□□□ 0.81
DDX41-216ENST00000513562 ADAMTS12P58397 1594 aa20.11■□□□□ 0.81
DDX41-216ENST00000513562 SHROOM2Q13796 1616 aa20.07■□□□□ 0.8
DDX41-216ENST00000513562 WRNQ14191 1432 aaPredicted RBP eCLIP20.06■□□□□ 0.8
DDX41-216ENST00000513562 FHAD1B1AJZ9 1412 aa20.04■□□□□ 0.8
DDX41-216ENST00000513562 ERICH3Q5RHP9 1530 aa19.97■□□□□ 0.79
DDX41-216ENST00000513562 PRG4Q92954 1404 aaPredicted RBP19.95■□□□□ 0.78
DDX41-216ENST00000513562 KIF13AQ9H1H9 1805 aa19.95■□□□□ 0.78
DDX41-216ENST00000513562 TOP2BQ02880 1626 aa19.94■□□□□ 0.78
DDX41-216ENST00000513562 BIVM-ERCC5R4GMW8 1640 aa19.93■□□□□ 0.78
DDX41-216ENST00000513562 ABCC10Q5T3U5 1492 aa19.91■□□□□ 0.78
DDX41-216ENST00000513562 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms