RNA–Protein interactions for RNA: ENST00000513514.2

DDR1-273, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 1 (best)

Gene DDR1, Length 186 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-273ENST00000513514 NISCHQ9Y2I1 1504 aa16.86■□□□□ 0.29
DDR1-273ENST00000513514 ABCC9O60706 1549 aa15.75■□□□□ 0.11
DDR1-273ENST00000513514 CCDC180Q9P1Z9 1646 aa15.27■□□□□ 0.03
DDR1-273ENST00000513514 DNAJC5BQ9UF47 199 aa15.12■□□□□ 0.01
DDR1-273ENST00000513514 RB1CC1Q8TDY2 1594 aa14.72□□□□□ -0.05
DDR1-273ENST00000513514 PABPN1Q86U42 306 aaKnown RBP eCLIP14.58□□□□□ -0.08
DDR1-273ENST00000513514 NACADO15069 1562 aa14.5□□□□□ -0.09
DDR1-273ENST00000513514 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
DDR1-273ENST00000513514 BICRAQ9NZM4 1560 aa14.39□□□□□ -0.11
DDR1-273ENST00000513514 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
DDR1-273ENST00000513514 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
DDR1-273ENST00000513514 CECR2Q9BXF3 1484 aa14.18□□□□□ -0.14
DDR1-273ENST00000513514 CC2D2AQ9P2K1 1620 aa14.17□□□□□ -0.14
DDR1-273ENST00000513514 MYO15BQ96JP2 1530 aa14.14□□□□□ -0.15
DDR1-273ENST00000513514 DNAJC5Q9H3Z4 198 aa14.06□□□□□ -0.16
DDR1-273ENST00000513514 DCAF1Q9Y4B6 1507 aa14.05□□□□□ -0.16
DDR1-273ENST00000513514 EIF4G1Q04637 1599 aaKnown RBP14.05□□□□□ -0.16
DDR1-273ENST00000513514 SHROOM4Q9ULL8 1493 aa14.02□□□□□ -0.16
DDR1-273ENST00000513514 SCRIBQ14160 1630 aa14□□□□□ -0.17
DDR1-273ENST00000513514 CUX2O14529 1486 aa13.64□□□□□ -0.23
DDR1-273ENST00000513514 SUPT5HO00267 1087 aaKnown RBP13.61□□□□□ -0.23
DDR1-273ENST00000513514 ERCC6Q03468 1493 aa13.57□□□□□ -0.24
DDR1-273ENST00000513514 NESP48681 1621 aa13.44□□□□□ -0.26
DDR1-273ENST00000513514 CHIC1Q5VXU3 224 aa13.44□□□□□ -0.26
DDR1-273ENST00000513514 NCAPD3P42695 1498 aa13.4□□□□□ -0.26
DDR1-273ENST00000513514 TRIM41Q8WV44 630 aa13.37□□□□□ -0.27
DDR1-273ENST00000513514 THOC2Q8NI27 1593 aaKnown RBP13.37□□□□□ -0.27
DDR1-273ENST00000513514 ATAD2BQ9ULI0 1458 aa13.36□□□□□ -0.27
DDR1-273ENST00000513514 HMGXB3Q12766 1538 aa13.3□□□□□ -0.28
DDR1-273ENST00000513514 SMARCA2P51531 1590 aa13.3□□□□□ -0.28
DDR1-273ENST00000513514 SMARCA4P51532 1647 aa13.26□□□□□ -0.29
DDR1-273ENST00000513514 KIF21AQ7Z4S6 1674 aa13.22□□□□□ -0.29
DDR1-273ENST00000513514 BAZ1BQ9UIG0 1483 aaKnown RBP13.2□□□□□ -0.3
DDR1-273ENST00000513514 RSF1Q96T23 1441 aaPredicted RBP13.19□□□□□ -0.3
DDR1-273ENST00000513514 LAMC3Q9Y6N6 1575 aa13.16□□□□□ -0.3
DDR1-273ENST00000513514 PEG3Q9GZU2 1588 aa13.09□□□□□ -0.31
DDR1-273ENST00000513514 BAZ1AQ9NRL2 1556 aaPredicted RBP13.09□□□□□ -0.31
DDR1-273ENST00000513514 PDS5BQ9NTI5 1447 aa13.08□□□□□ -0.32
DDR1-273ENST00000513514 HRCP23327 699 aa13.07□□□□□ -0.32
DDR1-273ENST00000513514 MRC2Q9UBG0 1479 aa13.06□□□□□ -0.32
DDR1-273ENST00000513514 WDR62O43379 1518 aa13.05□□□□□ -0.32
DDR1-273ENST00000513514 MROH2BQ7Z745 1585 aa13.04□□□□□ -0.32
DDR1-273ENST00000513514 CADPSQ9ULU8 1353 aa12.98□□□□□ -0.33
DDR1-273ENST00000513514 CEP164Q9UPV0 1460 aa12.92□□□□□ -0.34
DDR1-273ENST00000513514 TRIM26Q12899 539 aaPredicted RBP12.92□□□□□ -0.34
DDR1-273ENST00000513514 RIMBP3CA6NJZ7 1639 aa12.9□□□□□ -0.34
DDR1-273ENST00000513514 RIMBP3BA6NNM3 1639 aa12.9□□□□□ -0.34
DDR1-273ENST00000513514 RIMBP3Q9UFD9 1639 aa12.9□□□□□ -0.34
DDR1-273ENST00000513514 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
DDR1-273ENST00000513514 FANCD2Q9BXW9 1451 aa12.88□□□□□ -0.35
DDR1-273ENST00000513514 ZEB1P37275 1124 aaPredicted RBP12.87□□□□□ -0.35
DDR1-273ENST00000513514 WIZO95785 1651 aa12.86□□□□□ -0.35
DDR1-273ENST00000513514 PCGF6Q9BYE7 350 aa12.85□□□□□ -0.35
DDR1-273ENST00000513514 URB2Q14146 1524 aaKnown RBP12.84□□□□□ -0.35
DDR1-273ENST00000513514 ARHGEF11O15085 1522 aa12.82□□□□□ -0.36
DDR1-273ENST00000513514 LOC105371045A0A1W2PR82 267 aa12.79□□□□□ -0.36
DDR1-273ENST00000513514 TOP2AP11388 1531 aaKnown RBP12.78□□□□□ -0.36
DDR1-273ENST00000513514 CFTRP13569 1480 aa12.77□□□□□ -0.37
DDR1-273ENST00000513514 ZNF608Q9ULD9 1512 aaPredicted RBP12.77□□□□□ -0.37
DDR1-273ENST00000513514 EEA1Q15075 1411 aa12.72□□□□□ -0.37
DDR1-273ENST00000513514 CYB5RLQ6IPT4 315 aa12.69□□□□□ -0.38
DDR1-273ENST00000513514 ARAP1Q96P48 1450 aa12.69□□□□□ -0.38
DDR1-273ENST00000513514 EIF4G3O43432 1585 aaKnown RBP12.67□□□□□ -0.38
DDR1-273ENST00000513514 TRHP20396 242 aaPredicted RBP12.66□□□□□ -0.38
DDR1-273ENST00000513514 IFT140Q96RY7 1462 aa12.65□□□□□ -0.38
DDR1-273ENST00000513514 CHD1O14646 1710 aa12.62□□□□□ -0.39
DDR1-273ENST00000513514 CCDC88BA6NC98 1476 aa12.6□□□□□ -0.39
DDR1-273ENST00000513514 TOPBP1Q92547 1522 aa12.6□□□□□ -0.39
DDR1-273ENST00000513514 PRDM2Q13029 1718 aa12.59□□□□□ -0.39
DDR1-273ENST00000513514 WRNQ14191 1432 aaPredicted RBP eCLIP12.59□□□□□ -0.39
DDR1-273ENST00000513514 AQRO60306 1485 aaKnown RBP eCLIP12.56□□□□□ -0.42e-6■■■□□ 15.2
DDR1-273ENST00000513514 AEBP2Q6ZN18 517 aaPredicted RBP12.55□□□□□ -0.4
DDR1-273ENST00000513514 TARBP1Q13395 1621 aaKnown RBP12.53□□□□□ -0.4
DDR1-273ENST00000513514 TNIKQ9UKE5 1360 aa12.53□□□□□ -0.4
DDR1-273ENST00000513514 FBLN2P98095 1184 aa12.51□□□□□ -0.41
DDR1-273ENST00000513514 DNMBPQ6XZF7 1577 aa12.51□□□□□ -0.41
DDR1-273ENST00000513514 CLASP1Q7Z460 1538 aa12.47□□□□□ -0.41
DDR1-273ENST00000513514 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.41
DDR1-273ENST00000513514 FAM9AQ8IZU1 332 aaPredicted RBP12.46□□□□□ -0.41
DDR1-273ENST00000513514 RAD54L2Q9Y4B4 1467 aa12.45□□□□□ -0.42
DDR1-273ENST00000513514 CSRNP3Q8WYN3 585 aa12.44□□□□□ -0.42
DDR1-273ENST00000513514 SNAPC4Q5SXM2 1469 aa12.44□□□□□ -0.42
DDR1-273ENST00000513514 GOLGA3Q08378 1498 aa12.42□□□□□ -0.42
DDR1-273ENST00000513514 ABCC8Q09428 1581 aa12.42□□□□□ -0.42
DDR1-273ENST00000513514 TDRD9Q8NDG6 1382 aaKnown RBP12.42□□□□□ -0.42
DDR1-273ENST00000513514 CEP162Q5TB80 1403 aa12.39□□□□□ -0.43
DDR1-273ENST00000513514 KIF21BO75037 1637 aa12.38□□□□□ -0.43
DDR1-273ENST00000513514 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
DDR1-273ENST00000513514 PPARGC1BQ86YN6 1023 aaKnown RBP12.36□□□□□ -0.43
DDR1-273ENST00000513514 GAPVD1Q14C86 1478 aa12.34□□□□□ -0.43
DDR1-273ENST00000513514 SOGA1O94964 1423 aa12.34□□□□□ -0.43
DDR1-273ENST00000513514 FGD5Q6ZNL6 1462 aa12.34□□□□□ -0.43
DDR1-273ENST00000513514 ERCC6L2Q5T890 1561 aa12.32□□□□□ -0.44
DDR1-273ENST00000513514 CHMP7Q8WUX9 453 aaPredicted RBP12.31□□□□□ -0.44
DDR1-273ENST00000513514 MAGI1Q96QZ7 1491 aaPredicted RBP12.31□□□□□ -0.44
DDR1-273ENST00000513514 SYNJ2O15056 1496 aa12.29□□□□□ -0.44
DDR1-273ENST00000513514 GRIN2BQ13224 1484 aa12.28□□□□□ -0.44
DDR1-273ENST00000513514 CUX1P39880 1505 aa12.27□□□□□ -0.44
DDR1-273ENST00000513514 WDR97A6NE52 1622 aa12.27□□□□□ -0.44
DDR1-273ENST00000513514 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms