RNA–Protein interactions for RNA: ENST00000513243.5

DDR1-272, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 5

Gene DDR1, Length 549 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-272ENST00000513243 NISCHQ9Y2I1 1504 aa43.36■■■■■ 4.53
DDR1-272ENST00000513243 CCDC180Q9P1Z9 1646 aa38.55■■■■□ 3.76
DDR1-272ENST00000513243 ABCC9O60706 1549 aa37.95■■■■□ 3.67
DDR1-272ENST00000513243 RB1CC1Q8TDY2 1594 aa36.39■■■■□ 3.42
DDR1-272ENST00000513243 DCAF8L2P0C7V8 631 aa36.35■■■■□ 3.41
DDR1-272ENST00000513243 NACADO15069 1562 aa36.32■■■■□ 3.4
DDR1-272ENST00000513243 ZCCHC6Q5VYS8 1495 aaKnown RBP36.08■■■■□ 3.37
DDR1-272ENST00000513243 MYO15BQ96JP2 1530 aa36.04■■■■□ 3.36
DDR1-272ENST00000513243 DCAF1Q9Y4B6 1507 aa35.84■■■■□ 3.33
DDR1-272ENST00000513243 UNC13AQ9UPW8 1703 aa35.54■■■■□ 3.28
DDR1-272ENST00000513243 PABPN1Q86U42 306 aaKnown RBP eCLIP35.48■■■■□ 3.27
DDR1-272ENST00000513243 BICRAQ9NZM4 1560 aa35.33■■■■□ 3.25
DDR1-272ENST00000513243 SCRIBQ14160 1630 aa35.21■■■■□ 3.23
DDR1-272ENST00000513243 DNAJC5BQ9UF47 199 aa35.04■■■■□ 3.2
DDR1-272ENST00000513243 SHROOM4Q9ULL8 1493 aa34.88■■■■□ 3.17
DDR1-272ENST00000513243 EIF4G1Q04637 1599 aaKnown RBP34.39■■■■□ 3.1
DDR1-272ENST00000513243 CC2D2AQ9P2K1 1620 aa34.3■■■■□ 3.08
DDR1-272ENST00000513243 CECR2Q9BXF3 1484 aa34.1■■■■□ 3.05
DDR1-272ENST00000513243 SMARCA4P51532 1647 aa33.65■■■□□ 2.98
DDR1-272ENST00000513243 BAZ1AQ9NRL2 1556 aaPredicted RBP33.6■■■□□ 2.97
DDR1-272ENST00000513243 NCAPD3P42695 1498 aa33.55■■■□□ 2.96
DDR1-272ENST00000513243 ATAD2BQ9ULI0 1458 aa33.55■■■□□ 2.96
DDR1-272ENST00000513243 SMARCA2P51531 1590 aa33.46■■■□□ 2.95
DDR1-272ENST00000513243 MROH2BQ7Z745 1585 aa33.43■■■□□ 2.94
DDR1-272ENST00000513243 PEG3Q9GZU2 1588 aa33.33■■■□□ 2.93
DDR1-272ENST00000513243 HMGXB3Q12766 1538 aa33.33■■■□□ 2.93
DDR1-272ENST00000513243 BAZ1BQ9UIG0 1483 aaKnown RBP33.24■■■□□ 2.91
DDR1-272ENST00000513243 WIZO95785 1651 aa33.04■■■□□ 2.88
DDR1-272ENST00000513243 RSF1Q96T23 1441 aaPredicted RBP33.01■■■□□ 2.87
DDR1-272ENST00000513243 NESP48681 1621 aa32.8■■■□□ 2.84
DDR1-272ENST00000513243 ERCC6Q03468 1493 aa32.69■■■□□ 2.82
DDR1-272ENST00000513243 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
DDR1-272ENST00000513243 LAMC3Q9Y6N6 1575 aa32.64■■■□□ 2.82
DDR1-272ENST00000513243 CADPSQ9ULU8 1353 aa32.57■■■□□ 2.8
DDR1-272ENST00000513243 PDS5BQ9NTI5 1447 aa32.45■■■□□ 2.79
DDR1-272ENST00000513243 CUX2O14529 1486 aa32.39■■■□□ 2.78
DDR1-272ENST00000513243 KIF21AQ7Z4S6 1674 aa32.35■■■□□ 2.77
DDR1-272ENST00000513243 CFTRP13569 1480 aa32.34■■■□□ 2.77
DDR1-272ENST00000513243 CCDC88BA6NC98 1476 aa32.33■■■□□ 2.77
DDR1-272ENST00000513243 THOC2Q8NI27 1593 aaKnown RBP32.28■■■□□ 2.76
DDR1-272ENST00000513243 FANCD2Q9BXW9 1451 aa32.18■■■□□ 2.74
DDR1-272ENST00000513243 CEP164Q9UPV0 1460 aa32.14■■■□□ 2.74
DDR1-272ENST00000513243 MRC2Q9UBG0 1479 aa32.13■■■□□ 2.73
DDR1-272ENST00000513243 SUPT5HO00267 1087 aaKnown RBP32.09■■■□□ 2.73
DDR1-272ENST00000513243 WDR62O43379 1518 aa32.02■■■□□ 2.72
DDR1-272ENST00000513243 PRDM2Q13029 1718 aa31.98■■■□□ 2.71
DDR1-272ENST00000513243 URB2Q14146 1524 aaKnown RBP31.89■■■□□ 2.7
DDR1-272ENST00000513243 TOPBP1Q92547 1522 aa31.65■■■□□ 2.66
DDR1-272ENST00000513243 DNAJC5Q9H3Z4 198 aa31.64■■■□□ 2.66
DDR1-272ENST00000513243 ABCC8Q09428 1581 aa31.61■■■□□ 2.65
DDR1-272ENST00000513243 DNMBPQ6XZF7 1577 aa31.57■■■□□ 2.64
DDR1-272ENST00000513243 IFT140Q96RY7 1462 aa31.47■■■□□ 2.63
DDR1-272ENST00000513243 ZNF608Q9ULD9 1512 aaPredicted RBP31.39■■■□□ 2.61
DDR1-272ENST00000513243 POLA1P09884 1462 aaPredicted RBP31.37■■■□□ 2.61
DDR1-272ENST00000513243 CUX1P39880 1505 aa31.37■■■□□ 2.61
DDR1-272ENST00000513243 TARBP1Q13395 1621 aaKnown RBP31.31■■■□□ 2.6
DDR1-272ENST00000513243 FGD5Q6ZNL6 1462 aa31.27■■■□□ 2.6
DDR1-272ENST00000513243 RAD54L2Q9Y4B4 1467 aa31.27■■■□□ 2.6
DDR1-272ENST00000513243 SOGA1O94964 1423 aa31.26■■■□□ 2.6
DDR1-272ENST00000513243 EIF4G3O43432 1585 aaKnown RBP31.2■■■□□ 2.58
DDR1-272ENST00000513243 AQRO60306 1485 aaKnown RBP eCLIP31.2■■■□□ 2.582e-7■■■■■ 31.6
DDR1-272ENST00000513243 TDRD9Q8NDG6 1382 aaKnown RBP31.13■■■□□ 2.57
DDR1-272ENST00000513243 WRNQ14191 1432 aaPredicted RBP eCLIP31.1■■■□□ 2.57
DDR1-272ENST00000513243 OSCARQ8IYS5 282 aa31.08■■■□□ 2.57
DDR1-272ENST00000513243 SYNJ1O43426 1573 aa31.03■■■□□ 2.56
DDR1-272ENST00000513243 TOP2BQ02880 1626 aa31.02■■■□□ 2.56
DDR1-272ENST00000513243 BIVM-ERCC5R4GMW8 1640 aa31.01■■■□□ 2.55
DDR1-272ENST00000513243 WDR97A6NE52 1622 aa30.99■■■□□ 2.55
DDR1-272ENST00000513243 ABCA10Q8WWZ4 1543 aa30.96■■■□□ 2.55
DDR1-272ENST00000513243 GRIN2BQ13224 1484 aa30.89■■■□□ 2.53
DDR1-272ENST00000513243 GAPVD1Q14C86 1478 aa30.88■■■□□ 2.53
DDR1-272ENST00000513243 SNAPC4Q5SXM2 1469 aa30.87■■■□□ 2.53
DDR1-272ENST00000513243 FBLN2P98095 1184 aa30.86■■■□□ 2.53
DDR1-272ENST00000513243 ABCA5Q8WWZ7 1642 aa30.83■■■□□ 2.53
DDR1-272ENST00000513243 CHD1O14646 1710 aa30.82■■■□□ 2.52
DDR1-272ENST00000513243 MAGI1Q96QZ7 1491 aaPredicted RBP30.81■■■□□ 2.52
DDR1-272ENST00000513243 PBRM1Q86U86 1689 aa30.77■■■□□ 2.52
DDR1-272ENST00000513243 CHMP7Q8WUX9 453 aaPredicted RBP30.74■■■□□ 2.51
DDR1-272ENST00000513243 SYNJ2O15056 1496 aa30.7■■■□□ 2.51
DDR1-272ENST00000513243 ERICH3Q5RHP9 1530 aa30.57■■■□□ 2.48
DDR1-272ENST00000513243 RIMBP3CA6NJZ7 1639 aa30.55■■■□□ 2.48
DDR1-272ENST00000513243 RIMBP3BA6NNM3 1639 aa30.55■■■□□ 2.48
DDR1-272ENST00000513243 RIMBP3Q9UFD9 1639 aa30.55■■■□□ 2.48
DDR1-272ENST00000513243 ADAMTS12P58397 1594 aa30.54■■■□□ 2.48
DDR1-272ENST00000513243 ARHGEF11O15085 1522 aa30.54■■■□□ 2.48
DDR1-272ENST00000513243 TRIM41Q8WV44 630 aa30.54■■■□□ 2.48
DDR1-272ENST00000513243 FHAD1B1AJZ9 1412 aa30.52■■■□□ 2.48
DDR1-272ENST00000513243 CLASP1Q7Z460 1538 aa30.52■■■□□ 2.48
DDR1-272ENST00000513243 GRIN2AQ12879 1464 aa30.5■■■□□ 2.47
DDR1-272ENST00000513243 KIF27Q86VH2 1401 aa30.47■■■□□ 2.47
DDR1-272ENST00000513243 IGF1RP08069 1367 aa30.41■■■□□ 2.46
DDR1-272ENST00000513243 NUP160Q12769 1436 aa30.38■■■□□ 2.45
DDR1-272ENST00000513243 CEP170Q5SW79 1584 aa30.34■■■□□ 2.45
DDR1-272ENST00000513243 CYB5RLQ6IPT4 315 aa30.32■■■□□ 2.44
DDR1-272ENST00000513243 ARAP1Q96P48 1450 aa30.3■■■□□ 2.44
DDR1-272ENST00000513243 CUL7Q14999 1698 aa30.23■■■□□ 2.43
DDR1-272ENST00000513243 CARMIL1Q5VZK9 1371 aa30.2■■■□□ 2.43
DDR1-272ENST00000513243 RUSC2Q8N2Y8 1516 aa30.19■■■□□ 2.42
DDR1-272ENST00000513243 SHROOM2Q13796 1616 aa30.13■■■□□ 2.41
DDR1-272ENST00000513243 ERCC6L2Q5T890 1561 aa30.11■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms