RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 NISCHQ9Y2I1 1504 aa29.53■■■□□ 2.32
PDPN-210ENST00000513143 AEBP2Q6ZN18 517 aaPredicted RBP27.13■■□□□ 1.93
PDPN-210ENST00000513143 CCDC180Q9P1Z9 1646 aa26.04■■□□□ 1.76
PDPN-210ENST00000513143 CHIC1Q5VXU3 224 aa25.5■■□□□ 1.67
PDPN-210ENST00000513143 ABCC9O60706 1549 aa24.96■■□□□ 1.59
PDPN-210ENST00000513143 ZCCHC6Q5VYS8 1495 aaKnown RBP24.71■■□□□ 1.55
PDPN-210ENST00000513143 DCAF1Q9Y4B6 1507 aa24.47■■□□□ 1.51
PDPN-210ENST00000513143 DCAF8L2P0C7V8 631 aa24.43■■□□□ 1.5
PDPN-210ENST00000513143 MYO15BQ96JP2 1530 aa24.38■■□□□ 1.49
PDPN-210ENST00000513143 NACADO15069 1562 aa24.36■■□□□ 1.49
PDPN-210ENST00000513143 RB1CC1Q8TDY2 1594 aa24.25■■□□□ 1.47
PDPN-210ENST00000513143 SCRIBQ14160 1630 aa23.78■■□□□ 1.4
PDPN-210ENST00000513143 UNC13AQ9UPW8 1703 aa23.76■■□□□ 1.39
PDPN-210ENST00000513143 SHROOM4Q9ULL8 1493 aa23.61■■□□□ 1.37
PDPN-210ENST00000513143 BICRAQ9NZM4 1560 aa23.52■■□□□ 1.36
PDPN-210ENST00000513143 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.34
PDPN-210ENST00000513143 SENP3Q9H4L4 574 aaPredicted RBP23.08■■□□□ 1.29
PDPN-210ENST00000513143 CECR2Q9BXF3 1484 aa22.95■■□□□ 1.26
PDPN-210ENST00000513143 BAZ1AQ9NRL2 1556 aaPredicted RBP22.85■■□□□ 1.25
PDPN-210ENST00000513143 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
PDPN-210ENST00000513143 SMARCA4P51532 1647 aa22.81■■□□□ 1.24
PDPN-210ENST00000513143 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
PDPN-210ENST00000513143 MROH2BQ7Z745 1585 aa22.77■■□□□ 1.24
PDPN-210ENST00000513143 RSF1Q96T23 1441 aaPredicted RBP22.7■■□□□ 1.22
PDPN-210ENST00000513143 CC2D2AQ9P2K1 1620 aa22.63■■□□□ 1.21
PDPN-210ENST00000513143 PEG3Q9GZU2 1588 aa22.59■■□□□ 1.21
PDPN-210ENST00000513143 WIZO95785 1651 aa22.56■■□□□ 1.2
PDPN-210ENST00000513143 ATAD2BQ9ULI0 1458 aa22.56■■□□□ 1.2
PDPN-210ENST00000513143 SMARCA2P51531 1590 aa22.55■■□□□ 1.2
PDPN-210ENST00000513143 SUPT5HO00267 1087 aaKnown RBP22.48■■□□□ 1.19
PDPN-210ENST00000513143 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
PDPN-210ENST00000513143 DNAJC5BQ9UF47 199 aa22.46■■□□□ 1.19
PDPN-210ENST00000513143 HMGXB3Q12766 1538 aa22.4■■□□□ 1.18
PDPN-210ENST00000513143 BAZ1BQ9UIG0 1483 aaKnown RBP22.38■■□□□ 1.17
PDPN-210ENST00000513143 TOP2AP11388 1531 aaKnown RBP22.34■■□□□ 1.17
PDPN-210ENST00000513143 CCDC88BA6NC98 1476 aa22.08■■□□□ 1.12
PDPN-210ENST00000513143 CADPSQ9ULU8 1353 aa21.83■■□□□ 1.09
PDPN-210ENST00000513143 CFTRP13569 1480 aa21.82■■□□□ 1.08
PDPN-210ENST00000513143 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
PDPN-210ENST00000513143 NESP48681 1621 aa21.76■■□□□ 1.07
PDPN-210ENST00000513143 PRDM2Q13029 1718 aa21.73■■□□□ 1.07
PDPN-210ENST00000513143 PDS5BQ9NTI5 1447 aa21.61■■□□□ 1.05
PDPN-210ENST00000513143 FOXD1Q16676 465 aa21.59■■□□□ 1.05
PDPN-210ENST00000513143 FANCD2Q9BXW9 1451 aa21.58■■□□□ 1.04
PDPN-210ENST00000513143 KIF21AQ7Z4S6 1674 aa21.54■■□□□ 1.04
PDPN-210ENST00000513143 CEP164Q9UPV0 1460 aa21.5■■□□□ 1.03
PDPN-210ENST00000513143 ERCC6Q03468 1493 aa21.46■■□□□ 1.03
PDPN-210ENST00000513143 ABCC8Q09428 1581 aa21.41■■□□□ 1.02
PDPN-210ENST00000513143 WRNQ14191 1432 aaPredicted RBP eCLIP21.37■■□□□ 1.01
PDPN-210ENST00000513143 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
PDPN-210ENST00000513143 THOC2Q8NI27 1593 aaKnown RBP21.34■■□□□ 1.01
PDPN-210ENST00000513143 CUX1P39880 1505 aa21.34■■□□□ 1.01
PDPN-210ENST00000513143 URB2Q14146 1524 aaKnown RBP21.34■■□□□ 1.01
PDPN-210ENST00000513143 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
PDPN-210ENST00000513143 SYNJ1O43426 1573 aa21.31■■□□□ 1
PDPN-210ENST00000513143 TOPBP1Q92547 1522 aa21.3■■□□□ 1
PDPN-210ENST00000513143 TOP2BQ02880 1626 aa21.29■■□□□ 1
PDPN-210ENST00000513143 BIVM-ERCC5R4GMW8 1640 aa21.29■■□□□ 1
PDPN-210ENST00000513143 WDR62O43379 1518 aa21.29■■□□□ 1
PDPN-210ENST00000513143 TRIM41Q8WV44 630 aa21.21■□□□□ 0.99
PDPN-210ENST00000513143 FGD5Q6ZNL6 1462 aa21.17■□□□□ 0.98
PDPN-210ENST00000513143 POLA1P09884 1462 aaPredicted RBP21.15■□□□□ 0.98
PDPN-210ENST00000513143 CUX2O14529 1486 aa21.09■□□□□ 0.97
PDPN-210ENST00000513143 SOGA1O94964 1423 aa21.07■□□□□ 0.96
PDPN-210ENST00000513143 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
PDPN-210ENST00000513143 TARBP1Q13395 1621 aaKnown RBP21.04■□□□□ 0.96
PDPN-210ENST00000513143 IFT140Q96RY7 1462 aa21.04■□□□□ 0.96
PDPN-210ENST00000513143 ABCA10Q8WWZ4 1543 aa21■□□□□ 0.95
PDPN-210ENST00000513143 WDR97A6NE52 1622 aa21■□□□□ 0.95
PDPN-210ENST00000513143 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.94
PDPN-210ENST00000513143 KIF27Q86VH2 1401 aa20.89■□□□□ 0.93
PDPN-210ENST00000513143 TDRD9Q8NDG6 1382 aaKnown RBP20.88■□□□□ 0.93
PDPN-210ENST00000513143 ABCA5Q8WWZ7 1642 aa20.88■□□□□ 0.93
PDPN-210ENST00000513143 RUSC2Q8N2Y8 1516 aa20.87■□□□□ 0.93
PDPN-210ENST00000513143 EIF4G3O43432 1585 aaKnown RBP20.84■□□□□ 0.93
PDPN-210ENST00000513143 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.93
PDPN-210ENST00000513143 GAPVD1Q14C86 1478 aa20.84■□□□□ 0.93
PDPN-210ENST00000513143 EEA1Q15075 1411 aa20.84■□□□□ 0.93
PDPN-210ENST00000513143 PBRM1Q86U86 1689 aa20.78■□□□□ 0.92
PDPN-210ENST00000513143 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
PDPN-210ENST00000513143 ERICH3Q5RHP9 1530 aa20.76■□□□□ 0.91
PDPN-210ENST00000513143 IGF1RP08069 1367 aa20.75■□□□□ 0.91
PDPN-210ENST00000513143 FAM9AQ8IZU1 332 aaPredicted RBP20.75■□□□□ 0.91
PDPN-210ENST00000513143 CSRNP3Q8WYN3 585 aa20.73■□□□□ 0.91
PDPN-210ENST00000513143 CUL7Q14999 1698 aa20.67■□□□□ 0.9
PDPN-210ENST00000513143 SNAPC4Q5SXM2 1469 aa20.65■□□□□ 0.9
PDPN-210ENST00000513143 MAGI1Q96QZ7 1491 aaPredicted RBP20.65■□□□□ 0.9
PDPN-210ENST00000513143 CARMIL1Q5VZK9 1371 aa20.63■□□□□ 0.89
PDPN-210ENST00000513143 PRXQ9BXM0 1461 aa20.63■□□□□ 0.89
PDPN-210ENST00000513143 ADAMTS12P58397 1594 aa20.63■□□□□ 0.89
PDPN-210ENST00000513143 FHAD1B1AJZ9 1412 aa20.61■□□□□ 0.89
PDPN-210ENST00000513143 KIF21BO75037 1637 aa20.59■□□□□ 0.89
PDPN-210ENST00000513143 SYNJ2O15056 1496 aa20.57■□□□□ 0.88
PDPN-210ENST00000513143 RAPGEF2Q9Y4G8 1499 aa20.57■□□□□ 0.88
PDPN-210ENST00000513143 CHMP7Q8WUX9 453 aaPredicted RBP20.51■□□□□ 0.87
PDPN-210ENST00000513143 CHD1O14646 1710 aa20.5■□□□□ 0.87
PDPN-210ENST00000513143 GOLGA3Q08378 1498 aa20.5■□□□□ 0.87
PDPN-210ENST00000513143 GRIN2AQ12879 1464 aa20.5■□□□□ 0.87
PDPN-210ENST00000513143 FBLN2P98095 1184 aa20.47■□□□□ 0.87
PDPN-210ENST00000513143 LOC105371045A0A1W2PR82 267 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms