RNA–Protein interactions for RNA: ENST00000513121.1

MATR3-221, Transcript of matrin 3, humanhuman

TSL 2

Gene MATR3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-221ENST00000513121 NISCHQ9Y2I1 1504 aa47.25■■■■■ 5.15
MATR3-221ENST00000513121 CCDC180Q9P1Z9 1646 aa41.99■■■■■ 4.31
MATR3-221ENST00000513121 ABCC9O60706 1549 aa41.82■■■■■ 4.29
MATR3-221ENST00000513121 RB1CC1Q8TDY2 1594 aa39.84■■■■□ 3.97
MATR3-221ENST00000513121 DCAF8L2P0C7V8 631 aa39.82■■■■□ 3.97
MATR3-221ENST00000513121 NACADO15069 1562 aa39.7■■■■□ 3.95
MATR3-221ENST00000513121 MYO15BQ96JP2 1530 aa39.3■■■■□ 3.88
MATR3-221ENST00000513121 ZCCHC6Q5VYS8 1495 aaKnown RBP39.24■■■■□ 3.87
MATR3-221ENST00000513121 PABPN1Q86U42 306 aaKnown RBP eCLIP39.12■■■■□ 3.85
MATR3-221ENST00000513121 DNAJC5BQ9UF47 199 aa39.01■■■■□ 3.84
MATR3-221ENST00000513121 DCAF1Q9Y4B6 1507 aa38.98■■■■□ 3.83
MATR3-221ENST00000513121 UNC13AQ9UPW8 1703 aa38.86■■■■□ 3.81
MATR3-221ENST00000513121 BICRAQ9NZM4 1560 aa38.77■■■■□ 3.8
MATR3-221ENST00000513121 SCRIBQ14160 1630 aa38.45■■■■□ 3.75
MATR3-221ENST00000513121 SHROOM4Q9ULL8 1493 aa38.15■■■■□ 3.7
MATR3-221ENST00000513121 EIF4G1Q04637 1599 aaKnown RBP37.74■■■■□ 3.63
MATR3-221ENST00000513121 CC2D2AQ9P2K1 1620 aa37.71■■■■□ 3.63
MATR3-221ENST00000513121 CECR2Q9BXF3 1484 aa37.59■■■■□ 3.61
MATR3-221ENST00000513121 NCAPD3P42695 1498 aa36.75■■■■□ 3.47
MATR3-221ENST00000513121 ATAD2BQ9ULI0 1458 aa36.72■■■■□ 3.47
MATR3-221ENST00000513121 SMARCA4P51532 1647 aa36.69■■■■□ 3.46
MATR3-221ENST00000513121 BAZ1AQ9NRL2 1556 aaPredicted RBP36.57■■■■□ 3.44
MATR3-221ENST00000513121 SMARCA2P51531 1590 aa36.52■■■■□ 3.44
MATR3-221ENST00000513121 MROH2BQ7Z745 1585 aa36.45■■■■□ 3.43
MATR3-221ENST00000513121 HMGXB3Q12766 1538 aa36.41■■■■□ 3.42
MATR3-221ENST00000513121 PEG3Q9GZU2 1588 aa36.32■■■■□ 3.41
MATR3-221ENST00000513121 BAZ1BQ9UIG0 1483 aaKnown RBP36.31■■■■□ 3.4
MATR3-221ENST00000513121 NESP48681 1621 aa36.08■■■■□ 3.37
MATR3-221ENST00000513121 ERCC6Q03468 1493 aa35.99■■■■□ 3.35
MATR3-221ENST00000513121 WIZO95785 1651 aa35.97■■■■□ 3.35
MATR3-221ENST00000513121 RSF1Q96T23 1441 aaPredicted RBP35.9■■■■□ 3.34
MATR3-221ENST00000513121 CUX2O14529 1486 aa35.74■■■■□ 3.31
MATR3-221ENST00000513121 LAMC3Q9Y6N6 1575 aa35.72■■■■□ 3.31
MATR3-221ENST00000513121 CADPSQ9ULU8 1353 aa35.68■■■■□ 3.3
MATR3-221ENST00000513121 PDS5BQ9NTI5 1447 aa35.58■■■■□ 3.29
MATR3-221ENST00000513121 TOP2AP11388 1531 aaKnown RBP35.52■■■■□ 3.28
MATR3-221ENST00000513121 THOC2Q8NI27 1593 aaKnown RBP35.47■■■■□ 3.27
MATR3-221ENST00000513121 KIF21AQ7Z4S6 1674 aa35.43■■■■□ 3.26
MATR3-221ENST00000513121 DNAJC5Q9H3Z4 198 aa35.37■■■■□ 3.25
MATR3-221ENST00000513121 CFTRP13569 1480 aa35.35■■■■□ 3.25
MATR3-221ENST00000513121 MRC2Q9UBG0 1479 aa35.25■■■■□ 3.23
MATR3-221ENST00000513121 FANCD2Q9BXW9 1451 aa35.23■■■■□ 3.23
MATR3-221ENST00000513121 CCDC88BA6NC98 1476 aa35.22■■■■□ 3.23
MATR3-221ENST00000513121 CEP164Q9UPV0 1460 aa35.17■■■■□ 3.22
MATR3-221ENST00000513121 WDR62O43379 1518 aa35.12■■■■□ 3.21
MATR3-221ENST00000513121 URB2Q14146 1524 aaKnown RBP34.94■■■■□ 3.18
MATR3-221ENST00000513121 PRDM2Q13029 1718 aa34.72■■■■□ 3.15
MATR3-221ENST00000513121 SUPT5HO00267 1087 aaKnown RBP34.72■■■■□ 3.15
MATR3-221ENST00000513121 TOPBP1Q92547 1522 aa34.61■■■■□ 3.13
MATR3-221ENST00000513121 IFT140Q96RY7 1462 aa34.48■■■■□ 3.11
MATR3-221ENST00000513121 ZNF608Q9ULD9 1512 aaPredicted RBP34.48■■■■□ 3.11
MATR3-221ENST00000513121 ABCC8Q09428 1581 aa34.48■■■■□ 3.11
MATR3-221ENST00000513121 DNMBPQ6XZF7 1577 aa34.46■■■■□ 3.11
MATR3-221ENST00000513121 POLA1P09884 1462 aaPredicted RBP34.31■■■■□ 3.08
MATR3-221ENST00000513121 OSCARQ8IYS5 282 aa34.3■■■■□ 3.08
MATR3-221ENST00000513121 RAD54L2Q9Y4B4 1467 aa34.24■■■■□ 3.07
MATR3-221ENST00000513121 AQRO60306 1485 aaKnown RBP eCLIP34.23■■■■□ 3.076e-7■■■□□ 15.6
MATR3-221ENST00000513121 TARBP1Q13395 1621 aaKnown RBP34.22■■■■□ 3.07
MATR3-221ENST00000513121 CUX1P39880 1505 aa34.2■■■■□ 3.07
MATR3-221ENST00000513121 SOGA1O94964 1423 aa34.18■■■■□ 3.06
MATR3-221ENST00000513121 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
MATR3-221ENST00000513121 FGD5Q6ZNL6 1462 aa34.14■■■■□ 3.06
MATR3-221ENST00000513121 TDRD9Q8NDG6 1382 aaKnown RBP34.11■■■■□ 3.05
MATR3-221ENST00000513121 TRIM41Q8WV44 630 aa34.02■■■■□ 3.04
MATR3-221ENST00000513121 FBLN2P98095 1184 aa33.92■■■■□ 3.02
MATR3-221ENST00000513121 SNAPC4Q5SXM2 1469 aa33.82■■■■□ 3.01
MATR3-221ENST00000513121 WRNQ14191 1432 aaPredicted RBP eCLIP33.8■■■■□ 36e-9■■■■■ 30.6
MATR3-221ENST00000513121 WDR97A6NE52 1622 aa33.79■■■■□ 3
MATR3-221ENST00000513121 GRIN2BQ13224 1484 aa33.78■■■■□ 3
MATR3-221ENST00000513121 ABCA10Q8WWZ4 1543 aa33.77■■■■□ 3
MATR3-221ENST00000513121 CHD1O14646 1710 aa33.76■■■□□ 2.99
MATR3-221ENST00000513121 GAPVD1Q14C86 1478 aa33.74■■■□□ 2.99
MATR3-221ENST00000513121 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
MATR3-221ENST00000513121 CHMP7Q8WUX9 453 aaPredicted RBP33.72■■■□□ 2.99
MATR3-221ENST00000513121 MAGI1Q96QZ7 1491 aaPredicted RBP33.69■■■□□ 2.98
MATR3-221ENST00000513121 RIMBP3CA6NJZ7 1639 aa33.69■■■□□ 2.98
MATR3-221ENST00000513121 RIMBP3BA6NNM3 1639 aa33.69■■■□□ 2.98
MATR3-221ENST00000513121 TOP2BQ02880 1626 aa33.69■■■□□ 2.98
MATR3-221ENST00000513121 RIMBP3Q9UFD9 1639 aa33.69■■■□□ 2.98
MATR3-221ENST00000513121 ARHGEF11O15085 1522 aa33.69■■■□□ 2.98
MATR3-221ENST00000513121 BIVM-ERCC5R4GMW8 1640 aa33.64■■■□□ 2.98
MATR3-221ENST00000513121 ABCA5Q8WWZ7 1642 aa33.61■■■□□ 2.97
MATR3-221ENST00000513121 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
MATR3-221ENST00000513121 CYB5RLQ6IPT4 315 aa33.53■■■□□ 2.96
MATR3-221ENST00000513121 PBRM1Q86U86 1689 aa33.52■■■□□ 2.96
MATR3-221ENST00000513121 CLASP1Q7Z460 1538 aa33.49■■■□□ 2.95
MATR3-221ENST00000513121 ARAP1Q96P48 1450 aa33.43■■■□□ 2.94
MATR3-221ENST00000513121 GRIN2AQ12879 1464 aa33.34■■■□□ 2.93
MATR3-221ENST00000513121 ADAMTS12P58397 1594 aa33.34■■■□□ 2.93
MATR3-221ENST00000513121 FHAD1B1AJZ9 1412 aa33.33■■■□□ 2.93
MATR3-221ENST00000513121 ERICH3Q5RHP9 1530 aa33.3■■■□□ 2.92
MATR3-221ENST00000513121 NUP160Q12769 1436 aa33.25■■■□□ 2.91
MATR3-221ENST00000513121 CEP170Q5SW79 1584 aa33.2■■■□□ 2.91
MATR3-221ENST00000513121 IGF1RP08069 1367 aa33.15■■■□□ 2.9
MATR3-221ENST00000513121 KIF27Q86VH2 1401 aa33.11■■■□□ 2.89
MATR3-221ENST00000513121 ERCC6L2Q5T890 1561 aa33.09■■■□□ 2.89
MATR3-221ENST00000513121 JPH4Q96JJ6 628 aa32.98■■■□□ 2.87
MATR3-221ENST00000513121 TRHP20396 242 aaPredicted RBP32.95■■■□□ 2.87
MATR3-221ENST00000513121 SHROOM2Q13796 1616 aa32.95■■■□□ 2.86
MATR3-221ENST00000513121 PRG4Q92954 1404 aaPredicted RBP32.92■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms