RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 NISCHQ9Y2I1 1504 aa25.08■■□□□ 1.61
CLCN3-208ENST00000512813 ABCC9O60706 1549 aa24.01■■□□□ 1.43
CLCN3-208ENST00000512813 DNAJC5BQ9UF47 199 aa23.47■■□□□ 1.35
CLCN3-208ENST00000512813 CCDC180Q9P1Z9 1646 aa23.06■■□□□ 1.28
CLCN3-208ENST00000512813 RB1CC1Q8TDY2 1594 aa22.43■■□□□ 1.18
CLCN3-208ENST00000512813 DNAJC5Q9H3Z4 198 aa22.38■■□□□ 1.17
CLCN3-208ENST00000512813 PABPN1Q86U42 306 aaKnown RBP eCLIP22.1■■□□□ 1.13
CLCN3-208ENST00000512813 NACADO15069 1562 aa22.02■■□□□ 1.12
CLCN3-208ENST00000512813 UNC13AQ9UPW8 1703 aa21.92■■□□□ 1.1
CLCN3-208ENST00000512813 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
CLCN3-208ENST00000512813 CECR2Q9BXF3 1484 aa21.77■■□□□ 1.08
CLCN3-208ENST00000512813 CC2D2AQ9P2K1 1620 aa21.68■■□□□ 1.06
CLCN3-208ENST00000512813 SHROOM4Q9ULL8 1493 aa21.51■■□□□ 1.03
CLCN3-208ENST00000512813 DCAF8L2P0C7V8 631 aa21.44■■□□□ 1.02
CLCN3-208ENST00000512813 MYO15BQ96JP2 1530 aa21.4■■□□□ 1.02
CLCN3-208ENST00000512813 EIF4G1Q04637 1599 aaKnown RBP21.37■■□□□ 1.01
CLCN3-208ENST00000512813 CUX2O14529 1486 aa21.22■□□□□ 0.99
CLCN3-208ENST00000512813 TRIM41Q8WV44 630 aa20.87■□□□□ 0.93
CLCN3-208ENST00000512813 SCRIBQ14160 1630 aa20.85■□□□□ 0.93
CLCN3-208ENST00000512813 ERCC6Q03468 1493 aa20.81■□□□□ 0.92
CLCN3-208ENST00000512813 DCAF1Q9Y4B6 1507 aa20.71■□□□□ 0.91
CLCN3-208ENST00000512813 ZCCHC6Q5VYS8 1495 aaKnown RBP20.58■□□□□ 0.89
CLCN3-208ENST00000512813 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
CLCN3-208ENST00000512813 NCAPD3P42695 1498 aa20.33■□□□□ 0.85
CLCN3-208ENST00000512813 NESP48681 1621 aa20.31■□□□□ 0.84
CLCN3-208ENST00000512813 SMARCA2P51531 1590 aa20.14■□□□□ 0.81
CLCN3-208ENST00000512813 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
CLCN3-208ENST00000512813 ATAD2BQ9ULI0 1458 aa20.1■□□□□ 0.81
CLCN3-208ENST00000512813 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.81
CLCN3-208ENST00000512813 LAMC3Q9Y6N6 1575 aa20.06■□□□□ 0.8
CLCN3-208ENST00000512813 KIF21AQ7Z4S6 1674 aa20.06■□□□□ 0.8
CLCN3-208ENST00000512813 OSCARQ8IYS5 282 aa19.96■□□□□ 0.79
CLCN3-208ENST00000512813 PDS5BQ9NTI5 1447 aa19.94■□□□□ 0.78
CLCN3-208ENST00000512813 AEBP2Q6ZN18 517 aaPredicted RBP19.91■□□□□ 0.78
CLCN3-208ENST00000512813 RIMBP3CA6NJZ7 1639 aa19.91■□□□□ 0.78
CLCN3-208ENST00000512813 RIMBP3BA6NNM3 1639 aa19.91■□□□□ 0.78
CLCN3-208ENST00000512813 RIMBP3Q9UFD9 1639 aa19.91■□□□□ 0.78
CLCN3-208ENST00000512813 WDR62O43379 1518 aa19.88■□□□□ 0.77
CLCN3-208ENST00000512813 MRC2Q9UBG0 1479 aa19.86■□□□□ 0.77
CLCN3-208ENST00000512813 BAZ1BQ9UIG0 1483 aaKnown RBP19.83■□□□□ 0.76
CLCN3-208ENST00000512813 SMARCA4P51532 1647 aa19.82■□□□□ 0.76
CLCN3-208ENST00000512813 ARHGEF11O15085 1522 aa19.73■□□□□ 0.75
CLCN3-208ENST00000512813 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
CLCN3-208ENST00000512813 TRHP20396 242 aaPredicted RBP19.66■□□□□ 0.74
CLCN3-208ENST00000512813 CADPSQ9ULU8 1353 aa19.62■□□□□ 0.73
CLCN3-208ENST00000512813 CEP164Q9UPV0 1460 aa19.55■□□□□ 0.72
CLCN3-208ENST00000512813 CYB5RLQ6IPT4 315 aa19.53■□□□□ 0.72
CLCN3-208ENST00000512813 ARAP1Q96P48 1450 aa19.46■□□□□ 0.71
CLCN3-208ENST00000512813 FANCD2Q9BXW9 1451 aa19.41■□□□□ 0.7
CLCN3-208ENST00000512813 URB2Q14146 1524 aaKnown RBP19.34■□□□□ 0.69
CLCN3-208ENST00000512813 MROH2BQ7Z745 1585 aa19.3■□□□□ 0.68
CLCN3-208ENST00000512813 ILDR1Q86SU0 546 aaPredicted RBP19.29■□□□□ 0.68
CLCN3-208ENST00000512813 RSF1Q96T23 1441 aaPredicted RBP19.28■□□□□ 0.68
CLCN3-208ENST00000512813 ZNF608Q9ULD9 1512 aaPredicted RBP19.26■□□□□ 0.67
CLCN3-208ENST00000512813 CFTRP13569 1480 aa19.2■□□□□ 0.66
CLCN3-208ENST00000512813 IFT140Q96RY7 1462 aa19.2■□□□□ 0.66
CLCN3-208ENST00000512813 CHD1O14646 1710 aa19.19■□□□□ 0.66
CLCN3-208ENST00000512813 EIF4G3O43432 1585 aaKnown RBP19.15■□□□□ 0.66
CLCN3-208ENST00000512813 WIZO95785 1651 aa19■□□□□ 0.63
CLCN3-208ENST00000512813 CLASP1Q7Z460 1538 aa18.98■□□□□ 0.63
CLCN3-208ENST00000512813 PRDM2Q13029 1718 aa18.95■□□□□ 0.62
CLCN3-208ENST00000512813 FBLN2P98095 1184 aa18.94■□□□□ 0.62
CLCN3-208ENST00000512813 TOPBP1Q92547 1522 aa18.94■□□□□ 0.62
CLCN3-208ENST00000512813 AQRO60306 1485 aaKnown RBP eCLIP18.92■□□□□ 0.62
CLCN3-208ENST00000512813 TARBP1Q13395 1621 aaKnown RBP18.88■□□□□ 0.61
CLCN3-208ENST00000512813 SYNJ1O43426 1573 aa18.84■□□□□ 0.61
CLCN3-208ENST00000512813 ABCC8Q09428 1581 aa18.82■□□□□ 0.6
CLCN3-208ENST00000512813 GAPVD1Q14C86 1478 aa18.82■□□□□ 0.6
CLCN3-208ENST00000512813 DNMBPQ6XZF7 1577 aa18.79■□□□□ 0.6
CLCN3-208ENST00000512813 KDM4FA0A1W2PPD8 638 aa18.74■□□□□ 0.59
CLCN3-208ENST00000512813 SNAPC4Q5SXM2 1469 aa18.73■□□□□ 0.59
CLCN3-208ENST00000512813 TOP2AP11388 1531 aaKnown RBP18.73■□□□□ 0.59
CLCN3-208ENST00000512813 KIF13AQ9H1H9 1805 aa18.71■□□□□ 0.59
CLCN3-208ENST00000512813 POLA1P09884 1462 aaPredicted RBP18.67■□□□□ 0.58
CLCN3-208ENST00000512813 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
CLCN3-208ENST00000512813 WDR97A6NE52 1622 aa18.65■□□□□ 0.58
CLCN3-208ENST00000512813 CHMP7Q8WUX9 453 aaPredicted RBP18.65■□□□□ 0.58
CLCN3-208ENST00000512813 ERCC6L2Q5T890 1561 aa18.61■□□□□ 0.57
CLCN3-208ENST00000512813 SYNJ2O15056 1496 aa18.61■□□□□ 0.57
CLCN3-208ENST00000512813 TDRD9Q8NDG6 1382 aaKnown RBP18.61■□□□□ 0.57
CLCN3-208ENST00000512813 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.56
CLCN3-208ENST00000512813 GRIN2BQ13224 1484 aa18.53■□□□□ 0.56
CLCN3-208ENST00000512813 SOGA1O94964 1423 aa18.52■□□□□ 0.56
CLCN3-208ENST00000512813 HECW2Q9P2P5 1572 aa18.51■□□□□ 0.55
CLCN3-208ENST00000512813 KDM6BO15054 1643 aa18.51■□□□□ 0.55
CLCN3-208ENST00000512813 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
CLCN3-208ENST00000512813 FBXO41Q8TF61 875 aa18.47■□□□□ 0.55
CLCN3-208ENST00000512813 ABCC10Q5T3U5 1492 aa18.46■□□□□ 0.54
CLCN3-208ENST00000512813 CEP170Q5SW79 1584 aa18.43■□□□□ 0.54
CLCN3-208ENST00000512813 DIP2BQ9P265 1576 aa18.4■□□□□ 0.54
CLCN3-208ENST00000512813 PBRM1Q86U86 1689 aa18.4■□□□□ 0.54
CLCN3-208ENST00000512813 FAM69CQ0P6D2 419 aa18.39■□□□□ 0.53
CLCN3-208ENST00000512813 ADGRL1O94910 1474 aa18.39■□□□□ 0.53
CLCN3-208ENST00000512813 FGD5Q6ZNL6 1462 aa18.39■□□□□ 0.53
CLCN3-208ENST00000512813 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
CLCN3-208ENST00000512813 MAPKBP1O60336 1514 aa18.36■□□□□ 0.53
CLCN3-208ENST00000512813 LMTK3Q96Q04 1460 aa18.33■□□□□ 0.53
CLCN3-208ENST00000512813 GRIN2AQ12879 1464 aa18.3■□□□□ 0.52
CLCN3-208ENST00000512813 NUP160Q12769 1436 aa18.3■□□□□ 0.52
CLCN3-208ENST00000512813 ABCA5Q8WWZ7 1642 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms