RNA–Protein interactions for RNA: ENST00000512669.1

LETM1-207, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

TSL 1 (best)

Gene LETM1, Length 966 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-207ENST00000512669 NISCHQ9Y2I1 1504 aa36.49■■■■□ 3.43
LETM1-207ENST00000512669 ABCC9O60706 1549 aa32.97■■■□□ 2.87
LETM1-207ENST00000512669 CCDC180Q9P1Z9 1646 aa32.92■■■□□ 2.86
LETM1-207ENST00000512669 RB1CC1Q8TDY2 1594 aa31.42■■■□□ 2.62
LETM1-207ENST00000512669 NACADO15069 1562 aa31.17■■■□□ 2.58
LETM1-207ENST00000512669 DNAJC5BQ9UF47 199 aa31.02■■■□□ 2.56
LETM1-207ENST00000512669 DCAF8L2P0C7V8 631 aa30.76■■■□□ 2.51
LETM1-207ENST00000512669 MYO15BQ96JP2 1530 aa30.72■■■□□ 2.51
LETM1-207ENST00000512669 UNC13AQ9UPW8 1703 aa30.61■■■□□ 2.49
LETM1-207ENST00000512669 PABPN1Q86U42 306 aaKnown RBP eCLIP30.6■■■□□ 2.49
LETM1-207ENST00000512669 BICRAQ9NZM4 1560 aa30.41■■■□□ 2.46
LETM1-207ENST00000512669 DCAF1Q9Y4B6 1507 aa30.21■■■□□ 2.43
LETM1-207ENST00000512669 ZCCHC6Q5VYS8 1495 aaKnown RBP30.2■■■□□ 2.43
LETM1-207ENST00000512669 SHROOM4Q9ULL8 1493 aa30.19■■■□□ 2.42
LETM1-207ENST00000512669 SCRIBQ14160 1630 aa29.85■■■□□ 2.37
LETM1-207ENST00000512669 CC2D2AQ9P2K1 1620 aa29.82■■■□□ 2.36
LETM1-207ENST00000512669 CECR2Q9BXF3 1484 aa29.79■■■□□ 2.36
LETM1-207ENST00000512669 EIF4G1Q04637 1599 aaKnown RBP29.73■■■□□ 2.35
LETM1-207ENST00000512669 DNAJC5Q9H3Z4 198 aa28.77■■■□□ 2.2
LETM1-207ENST00000512669 NCAPD3P42695 1498 aa28.73■■■□□ 2.19
LETM1-207ENST00000512669 CUX2O14529 1486 aa28.64■■■□□ 2.17
LETM1-207ENST00000512669 ATAD2BQ9ULI0 1458 aa28.58■■■□□ 2.17
LETM1-207ENST00000512669 ERCC6Q03468 1493 aa28.57■■■□□ 2.16
LETM1-207ENST00000512669 SMARCA2P51531 1590 aa28.56■■■□□ 2.16
LETM1-207ENST00000512669 HMGXB3Q12766 1538 aa28.53■■■□□ 2.16
LETM1-207ENST00000512669 SMARCA4P51532 1647 aa28.51■■■□□ 2.15
LETM1-207ENST00000512669 BAZ1AQ9NRL2 1556 aaPredicted RBP28.37■■■□□ 2.13
LETM1-207ENST00000512669 BAZ1BQ9UIG0 1483 aaKnown RBP28.32■■■□□ 2.12
LETM1-207ENST00000512669 PEG3Q9GZU2 1588 aa28.28■■■□□ 2.12
LETM1-207ENST00000512669 NESP48681 1621 aa28.23■■■□□ 2.11
LETM1-207ENST00000512669 LAMC3Q9Y6N6 1575 aa28.15■■■□□ 2.1
LETM1-207ENST00000512669 THOC2Q8NI27 1593 aaKnown RBP28.08■■■□□ 2.09
LETM1-207ENST00000512669 MROH2BQ7Z745 1585 aa28.05■■■□□ 2.08
LETM1-207ENST00000512669 PDS5BQ9NTI5 1447 aa27.99■■■□□ 2.07
LETM1-207ENST00000512669 KIF21AQ7Z4S6 1674 aa27.92■■■□□ 2.06
LETM1-207ENST00000512669 CADPSQ9ULU8 1353 aa27.83■■■□□ 2.05
LETM1-207ENST00000512669 MRC2Q9UBG0 1479 aa27.73■■■□□ 2.03
LETM1-207ENST00000512669 WIZO95785 1651 aa27.7■■■□□ 2.02
LETM1-207ENST00000512669 WDR62O43379 1518 aa27.68■■■□□ 2.02
LETM1-207ENST00000512669 CEP164Q9UPV0 1460 aa27.58■■■□□ 2.01
LETM1-207ENST00000512669 FANCD2Q9BXW9 1451 aa27.51■■□□□ 1.99
LETM1-207ENST00000512669 CFTRP13569 1480 aa27.48■■□□□ 1.99
LETM1-207ENST00000512669 TOP2AP11388 1531 aaKnown RBP27.41■■□□□ 1.98
LETM1-207ENST00000512669 RSF1Q96T23 1441 aaPredicted RBP27.41■■□□□ 1.98
LETM1-207ENST00000512669 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
LETM1-207ENST00000512669 URB2Q14146 1524 aaKnown RBP27.26■■□□□ 1.95
LETM1-207ENST00000512669 PRDM2Q13029 1718 aa27.24■■□□□ 1.95
LETM1-207ENST00000512669 OSCARQ8IYS5 282 aa27.23■■□□□ 1.95
LETM1-207ENST00000512669 IFT140Q96RY7 1462 aa27.06■■□□□ 1.92
LETM1-207ENST00000512669 CCDC88BA6NC98 1476 aa27.04■■□□□ 1.92
LETM1-207ENST00000512669 ABCC8Q09428 1581 aa26.99■■□□□ 1.91
LETM1-207ENST00000512669 TOPBP1Q92547 1522 aa26.95■■□□□ 1.91
LETM1-207ENST00000512669 ZNF608Q9ULD9 1512 aaPredicted RBP26.93■■□□□ 1.9
LETM1-207ENST00000512669 RIMBP3CA6NJZ7 1639 aa26.88■■□□□ 1.89
LETM1-207ENST00000512669 RIMBP3BA6NNM3 1639 aa26.88■■□□□ 1.89
LETM1-207ENST00000512669 RIMBP3Q9UFD9 1639 aa26.88■■□□□ 1.89
LETM1-207ENST00000512669 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
LETM1-207ENST00000512669 EIF4G3O43432 1585 aaKnown RBP26.84■■□□□ 1.89
LETM1-207ENST00000512669 ARHGEF11O15085 1522 aa26.79■■□□□ 1.88
LETM1-207ENST00000512669 TARBP1Q13395 1621 aaKnown RBP26.73■■□□□ 1.87
LETM1-207ENST00000512669 POLA1P09884 1462 aaPredicted RBP26.67■■□□□ 1.86
LETM1-207ENST00000512669 CHD1O14646 1710 aa26.66■■□□□ 1.86
LETM1-207ENST00000512669 AQRO60306 1485 aaKnown RBP eCLIP26.66■■□□□ 1.861e-7■■■■□ 21
LETM1-207ENST00000512669 WDR97A6NE52 1622 aa26.58■■□□□ 1.85
LETM1-207ENST00000512669 CYB5RLQ6IPT4 315 aa26.54■■□□□ 1.84
LETM1-207ENST00000512669 FBLN2P98095 1184 aa26.53■■□□□ 1.84
LETM1-207ENST00000512669 SOGA1O94964 1423 aa26.53■■□□□ 1.84
LETM1-207ENST00000512669 RAD54L2Q9Y4B4 1467 aa26.5■■□□□ 1.83
LETM1-207ENST00000512669 ARAP1Q96P48 1450 aa26.49■■□□□ 1.83
LETM1-207ENST00000512669 TDRD9Q8NDG6 1382 aaKnown RBP26.46■■□□□ 1.83
LETM1-207ENST00000512669 FGD5Q6ZNL6 1462 aa26.46■■□□□ 1.83
LETM1-207ENST00000512669 SNAPC4Q5SXM2 1469 aa26.42■■□□□ 1.82
LETM1-207ENST00000512669 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
LETM1-207ENST00000512669 SYNJ1O43426 1573 aa26.39■■□□□ 1.82
LETM1-207ENST00000512669 CUX1P39880 1505 aa26.39■■□□□ 1.81
LETM1-207ENST00000512669 CLASP1Q7Z460 1538 aa26.38■■□□□ 1.81
LETM1-207ENST00000512669 GRIN2BQ13224 1484 aa26.37■■□□□ 1.81
LETM1-207ENST00000512669 CHMP7Q8WUX9 453 aaPredicted RBP26.35■■□□□ 1.81
LETM1-207ENST00000512669 TRHP20396 242 aaPredicted RBP26.33■■□□□ 1.81
LETM1-207ENST00000512669 SYNJ2O15056 1496 aa26.32■■□□□ 1.8
LETM1-207ENST00000512669 SUPT5HO00267 1087 aaKnown RBP26.28■■□□□ 1.8
LETM1-207ENST00000512669 PBRM1Q86U86 1689 aa26.24■■□□□ 1.79
LETM1-207ENST00000512669 GAPVD1Q14C86 1478 aa26.23■■□□□ 1.79
LETM1-207ENST00000512669 ABCA10Q8WWZ4 1543 aa26.19■■□□□ 1.78
LETM1-207ENST00000512669 ABCA5Q8WWZ7 1642 aa26.16■■□□□ 1.78
LETM1-207ENST00000512669 WRNQ14191 1432 aaPredicted RBP eCLIP26.05■■□□□ 1.76
LETM1-207ENST00000512669 GRIN2AQ12879 1464 aa26.01■■□□□ 1.75
LETM1-207ENST00000512669 ADAMTS12P58397 1594 aa25.98■■□□□ 1.75
LETM1-207ENST00000512669 BIVM-ERCC5R4GMW8 1640 aa25.96■■□□□ 1.75
LETM1-207ENST00000512669 TOP2BQ02880 1626 aa25.96■■□□□ 1.75
LETM1-207ENST00000512669 NUP160Q12769 1436 aa25.95■■□□□ 1.74
LETM1-207ENST00000512669 FHAD1B1AJZ9 1412 aa25.91■■□□□ 1.74
LETM1-207ENST00000512669 CEP170Q5SW79 1584 aa25.9■■□□□ 1.74
LETM1-207ENST00000512669 ERICH3Q5RHP9 1530 aa25.88■■□□□ 1.73
LETM1-207ENST00000512669 SHROOM2Q13796 1616 aa25.86■■□□□ 1.73
LETM1-207ENST00000512669 ERCC6L2Q5T890 1561 aa25.85■■□□□ 1.73
LETM1-207ENST00000512669 AEBP2Q6ZN18 517 aaPredicted RBP25.77■■□□□ 1.72
LETM1-207ENST00000512669 PRG4Q92954 1404 aaPredicted RBP25.68■■□□□ 1.7
LETM1-207ENST00000512669 JPH4Q96JJ6 628 aa25.63■■□□□ 1.69
LETM1-207ENST00000512669 RUSC2Q8N2Y8 1516 aa25.62■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms