RNA–Protein interactions for RNA: ENST00000512418.5

CCHCR1-229, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 4

Gene CCHCR1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-229ENST00000512418 NISCHQ9Y2I1 1504 aa36.77■■■■□ 3.48
CCHCR1-229ENST00000512418 CCDC180Q9P1Z9 1646 aa32.99■■■□□ 2.87
CCHCR1-229ENST00000512418 ABCC9O60706 1549 aa32.83■■■□□ 2.85
CCHCR1-229ENST00000512418 RB1CC1Q8TDY2 1594 aa31.34■■■□□ 2.61
CCHCR1-229ENST00000512418 NACADO15069 1562 aa31.16■■■□□ 2.58
CCHCR1-229ENST00000512418 DCAF8L2P0C7V8 631 aa30.92■■■□□ 2.54
CCHCR1-229ENST00000512418 MYO15BQ96JP2 1530 aa30.78■■■□□ 2.52
CCHCR1-229ENST00000512418 DNAJC5BQ9UF47 199 aa30.65■■■□□ 2.5
CCHCR1-229ENST00000512418 UNC13AQ9UPW8 1703 aa30.61■■■□□ 2.49
CCHCR1-229ENST00000512418 PABPN1Q86U42 306 aaKnown RBP eCLIP30.55■■■□□ 2.48
CCHCR1-229ENST00000512418 ZCCHC6Q5VYS8 1495 aaKnown RBP30.51■■■□□ 2.48
CCHCR1-229ENST00000512418 DCAF1Q9Y4B6 1507 aa30.42■■■□□ 2.46
CCHCR1-229ENST00000512418 BICRAQ9NZM4 1560 aa30.4■■■□□ 2.46
CCHCR1-229ENST00000512418 SHROOM4Q9ULL8 1493 aa30.07■■■□□ 2.4
CCHCR1-229ENST00000512418 SCRIBQ14160 1630 aa30.03■■■□□ 2.4
CCHCR1-229ENST00000512418 CC2D2AQ9P2K1 1620 aa29.68■■■□□ 2.34
CCHCR1-229ENST00000512418 EIF4G1Q04637 1599 aaKnown RBP29.66■■■□□ 2.34
CCHCR1-229ENST00000512418 CECR2Q9BXF3 1484 aa29.58■■■□□ 2.33
CCHCR1-229ENST00000512418 NCAPD3P42695 1498 aa28.74■■■□□ 2.19
CCHCR1-229ENST00000512418 SMARCA4P51532 1647 aa28.67■■■□□ 2.18
CCHCR1-229ENST00000512418 ATAD2BQ9ULI0 1458 aa28.66■■■□□ 2.18
CCHCR1-229ENST00000512418 SMARCA2P51531 1590 aa28.61■■■□□ 2.17
CCHCR1-229ENST00000512418 HMGXB3Q12766 1538 aa28.57■■■□□ 2.16
CCHCR1-229ENST00000512418 BAZ1AQ9NRL2 1556 aaPredicted RBP28.57■■■□□ 2.16
CCHCR1-229ENST00000512418 PEG3Q9GZU2 1588 aa28.41■■■□□ 2.14
CCHCR1-229ENST00000512418 BAZ1BQ9UIG0 1483 aaKnown RBP28.4■■■□□ 2.14
CCHCR1-229ENST00000512418 ERCC6Q03468 1493 aa28.36■■■□□ 2.13
CCHCR1-229ENST00000512418 MROH2BQ7Z745 1585 aa28.32■■■□□ 2.12
CCHCR1-229ENST00000512418 CUX2O14529 1486 aa28.3■■■□□ 2.12
CCHCR1-229ENST00000512418 NESP48681 1621 aa28.22■■■□□ 2.11
CCHCR1-229ENST00000512418 DNAJC5Q9H3Z4 198 aa28.11■■■□□ 2.09
CCHCR1-229ENST00000512418 LAMC3Q9Y6N6 1575 aa28.1■■■□□ 2.09
CCHCR1-229ENST00000512418 WIZO95785 1651 aa27.98■■■□□ 2.07
CCHCR1-229ENST00000512418 THOC2Q8NI27 1593 aaKnown RBP27.96■■■□□ 2.07
CCHCR1-229ENST00000512418 PDS5BQ9NTI5 1447 aa27.92■■■□□ 2.06
CCHCR1-229ENST00000512418 KIF21AQ7Z4S6 1674 aa27.89■■■□□ 2.06
CCHCR1-229ENST00000512418 CADPSQ9ULU8 1353 aa27.86■■■□□ 2.05
CCHCR1-229ENST00000512418 RSF1Q96T23 1441 aaPredicted RBP27.77■■■□□ 2.04
CCHCR1-229ENST00000512418 MRC2Q9UBG0 1479 aa27.67■■■□□ 2.02
CCHCR1-229ENST00000512418 TOP2AP11388 1531 aaKnown RBP27.67■■■□□ 2.02
CCHCR1-229ENST00000512418 WDR62O43379 1518 aa27.61■■■□□ 2.01
CCHCR1-229ENST00000512418 CEP164Q9UPV0 1460 aa27.59■■■□□ 2.01
CCHCR1-229ENST00000512418 CFTRP13569 1480 aa27.58■■■□□ 2.01
CCHCR1-229ENST00000512418 FANCD2Q9BXW9 1451 aa27.56■■■□□ 2
CCHCR1-229ENST00000512418 PRDM2Q13029 1718 aa27.33■■□□□ 1.97
CCHCR1-229ENST00000512418 CCDC88BA6NC98 1476 aa27.32■■□□□ 1.96
CCHCR1-229ENST00000512418 URB2Q14146 1524 aaKnown RBP27.31■■□□□ 1.96
CCHCR1-229ENST00000512418 TOPBP1Q92547 1522 aa27.05■■□□□ 1.92
CCHCR1-229ENST00000512418 IFT140Q96RY7 1462 aa27.03■■□□□ 1.92
CCHCR1-229ENST00000512418 ABCC8Q09428 1581 aa27.01■■□□□ 1.92
CCHCR1-229ENST00000512418 OSCARQ8IYS5 282 aa26.98■■□□□ 1.91
CCHCR1-229ENST00000512418 DNMBPQ6XZF7 1577 aa26.97■■□□□ 1.91
CCHCR1-229ENST00000512418 ZNF608Q9ULD9 1512 aaPredicted RBP26.95■■□□□ 1.9
CCHCR1-229ENST00000512418 TRIM41Q8WV44 630 aa26.9■■□□□ 1.9
CCHCR1-229ENST00000512418 EIF4G3O43432 1585 aaKnown RBP26.84■■□□□ 1.89
CCHCR1-229ENST00000512418 TARBP1Q13395 1621 aaKnown RBP26.79■■□□□ 1.88
CCHCR1-229ENST00000512418 POLA1P09884 1462 aaPredicted RBP26.78■■□□□ 1.88
CCHCR1-229ENST00000512418 AQRO60306 1485 aaKnown RBP eCLIP26.7■■□□□ 1.872e-10■■■■■ 47.9
CCHCR1-229ENST00000512418 RAD54L2Q9Y4B4 1467 aa26.65■■□□□ 1.86
CCHCR1-229ENST00000512418 SOGA1O94964 1423 aa26.64■■□□□ 1.85
CCHCR1-229ENST00000512418 RIMBP3CA6NJZ7 1639 aa26.63■■□□□ 1.85
CCHCR1-229ENST00000512418 RIMBP3BA6NNM3 1639 aa26.63■■□□□ 1.85
CCHCR1-229ENST00000512418 RIMBP3Q9UFD9 1639 aa26.63■■□□□ 1.85
CCHCR1-229ENST00000512418 FGD5Q6ZNL6 1462 aa26.62■■□□□ 1.85
CCHCR1-229ENST00000512418 CUX1P39880 1505 aa26.61■■□□□ 1.85
CCHCR1-229ENST00000512418 CHD1O14646 1710 aa26.6■■□□□ 1.85
CCHCR1-229ENST00000512418 WDR97A6NE52 1622 aa26.58■■□□□ 1.85
CCHCR1-229ENST00000512418 ARHGEF11O15085 1522 aa26.57■■□□□ 1.84
CCHCR1-229ENST00000512418 SUPT5HO00267 1087 aaKnown RBP26.57■■□□□ 1.84
CCHCR1-229ENST00000512418 TDRD9Q8NDG6 1382 aaKnown RBP26.56■■□□□ 1.84
CCHCR1-229ENST00000512418 FBLN2P98095 1184 aa26.49■■□□□ 1.83
CCHCR1-229ENST00000512418 SNAPC4Q5SXM2 1469 aa26.47■■□□□ 1.83
CCHCR1-229ENST00000512418 MAGI1Q96QZ7 1491 aaPredicted RBP26.42■■□□□ 1.82
CCHCR1-229ENST00000512418 GRIN2BQ13224 1484 aa26.42■■□□□ 1.82
CCHCR1-229ENST00000512418 CHMP7Q8WUX9 453 aaPredicted RBP26.34■■□□□ 1.81
CCHCR1-229ENST00000512418 GAPVD1Q14C86 1478 aa26.34■■□□□ 1.81
CCHCR1-229ENST00000512418 ABCA10Q8WWZ4 1543 aa26.34■■□□□ 1.81
CCHCR1-229ENST00000512418 SYNJ2O15056 1496 aa26.33■■□□□ 1.81
CCHCR1-229ENST00000512418 PBRM1Q86U86 1689 aa26.33■■□□□ 1.81
CCHCR1-229ENST00000512418 CYB5RLQ6IPT4 315 aa26.32■■□□□ 1.8
CCHCR1-229ENST00000512418 SYNJ1O43426 1573 aa26.32■■□□□ 1.8
CCHCR1-229ENST00000512418 ARAP1Q96P48 1450 aa26.31■■□□□ 1.8
CCHCR1-229ENST00000512418 CLASP1Q7Z460 1538 aa26.31■■□□□ 1.8
CCHCR1-229ENST00000512418 ABCA5Q8WWZ7 1642 aa26.29■■□□□ 1.8
CCHCR1-229ENST00000512418 WRNQ14191 1432 aaPredicted RBP eCLIP26.25■■□□□ 1.79
CCHCR1-229ENST00000512418 BIVM-ERCC5R4GMW8 1640 aa26.24■■□□□ 1.79
CCHCR1-229ENST00000512418 TOP2BQ02880 1626 aa26.23■■□□□ 1.79
CCHCR1-229ENST00000512418 ADAMTS12P58397 1594 aa26.09■■□□□ 1.77
CCHCR1-229ENST00000512418 GRIN2AQ12879 1464 aa26.09■■□□□ 1.77
CCHCR1-229ENST00000512418 ERICH3Q5RHP9 1530 aa26.02■■□□□ 1.76
CCHCR1-229ENST00000512418 FHAD1B1AJZ9 1412 aa26.01■■□□□ 1.75
CCHCR1-229ENST00000512418 TRHP20396 242 aaPredicted RBP26■■□□□ 1.75
CCHCR1-229ENST00000512418 NUP160Q12769 1436 aa25.99■■□□□ 1.75
CCHCR1-229ENST00000512418 CEP170Q5SW79 1584 aa25.97■■□□□ 1.75
CCHCR1-229ENST00000512418 ERCC6L2Q5T890 1561 aa25.88■■□□□ 1.73
CCHCR1-229ENST00000512418 SHROOM2Q13796 1616 aa25.87■■□□□ 1.73
CCHCR1-229ENST00000512418 RUSC2Q8N2Y8 1516 aa25.73■■□□□ 1.71
CCHCR1-229ENST00000512418 KIF27Q86VH2 1401 aa25.71■■□□□ 1.71
CCHCR1-229ENST00000512418 PRG4Q92954 1404 aaPredicted RBP25.71■■□□□ 1.71
CCHCR1-229ENST00000512418 JPH4Q96JJ6 628 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms