RNA–Protein interactions for RNA: ENST00000512336.5

DDR1-267, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 4

Gene DDR1, Length 572 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-267ENST00000512336 NISCHQ9Y2I1 1504 aa31.3■■■□□ 2.6
DDR1-267ENST00000512336 ABCC9O60706 1549 aa28.8■■■□□ 2.2
DDR1-267ENST00000512336 CCDC180Q9P1Z9 1646 aa28.27■■■□□ 2.12
DDR1-267ENST00000512336 DNAJC5BQ9UF47 199 aa27.45■■□□□ 1.98
DDR1-267ENST00000512336 RB1CC1Q8TDY2 1594 aa27.16■■□□□ 1.94
DDR1-267ENST00000512336 NACADO15069 1562 aa26.84■■□□□ 1.89
DDR1-267ENST00000512336 PABPN1Q86U42 306 aaKnown RBP eCLIP26.74■■□□□ 1.87
DDR1-267ENST00000512336 DCAF8L2P0C7V8 631 aa26.66■■□□□ 1.86
DDR1-267ENST00000512336 UNC13AQ9UPW8 1703 aa26.53■■□□□ 1.84
DDR1-267ENST00000512336 BICRAQ9NZM4 1560 aa26.41■■□□□ 1.82
DDR1-267ENST00000512336 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
DDR1-267ENST00000512336 CECR2Q9BXF3 1484 aa25.98■■□□□ 1.75
DDR1-267ENST00000512336 CC2D2AQ9P2K1 1620 aa25.97■■□□□ 1.75
DDR1-267ENST00000512336 SHROOM4Q9ULL8 1493 aa25.96■■□□□ 1.75
DDR1-267ENST00000512336 ZCCHC6Q5VYS8 1495 aaKnown RBP25.85■■□□□ 1.73
DDR1-267ENST00000512336 DCAF1Q9Y4B6 1507 aa25.8■■□□□ 1.72
DDR1-267ENST00000512336 EIF4G1Q04637 1599 aaKnown RBP25.8■■□□□ 1.72
DDR1-267ENST00000512336 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
DDR1-267ENST00000512336 DNAJC5Q9H3Z4 198 aa25.52■■□□□ 1.68
DDR1-267ENST00000512336 CUX2O14529 1486 aa24.98■■□□□ 1.59
DDR1-267ENST00000512336 ERCC6Q03468 1493 aa24.89■■□□□ 1.57
DDR1-267ENST00000512336 NCAPD3P42695 1498 aa24.81■■□□□ 1.56
DDR1-267ENST00000512336 ATAD2BQ9ULI0 1458 aa24.68■■□□□ 1.54
DDR1-267ENST00000512336 NESP48681 1621 aa24.61■■□□□ 1.53
DDR1-267ENST00000512336 HMGXB3Q12766 1538 aa24.57■■□□□ 1.52
DDR1-267ENST00000512336 SMARCA2P51531 1590 aa24.55■■□□□ 1.52
DDR1-267ENST00000512336 SMARCA4P51532 1647 aa24.53■■□□□ 1.52
DDR1-267ENST00000512336 THOC2Q8NI27 1593 aaKnown RBP24.44■■□□□ 1.5
DDR1-267ENST00000512336 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
DDR1-267ENST00000512336 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.48
DDR1-267ENST00000512336 LAMC3Q9Y6N6 1575 aa24.32■■□□□ 1.48
DDR1-267ENST00000512336 PEG3Q9GZU2 1588 aa24.27■■□□□ 1.48
DDR1-267ENST00000512336 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
DDR1-267ENST00000512336 TRIM41Q8WV44 630 aa24.24■■□□□ 1.47
DDR1-267ENST00000512336 PDS5BQ9NTI5 1447 aa24.2■■□□□ 1.46
DDR1-267ENST00000512336 MROH2BQ7Z745 1585 aa24.13■■□□□ 1.45
DDR1-267ENST00000512336 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
DDR1-267ENST00000512336 MRC2Q9UBG0 1479 aa24.03■■□□□ 1.44
DDR1-267ENST00000512336 WDR62O43379 1518 aa23.99■■□□□ 1.43
DDR1-267ENST00000512336 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
DDR1-267ENST00000512336 WIZO95785 1651 aa23.81■■□□□ 1.4
DDR1-267ENST00000512336 FANCD2Q9BXW9 1451 aa23.77■■□□□ 1.4
DDR1-267ENST00000512336 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
DDR1-267ENST00000512336 CFTRP13569 1480 aa23.66■■□□□ 1.38
DDR1-267ENST00000512336 URB2Q14146 1524 aaKnown RBP23.62■■□□□ 1.37
DDR1-267ENST00000512336 RIMBP3CA6NJZ7 1639 aa23.52■■□□□ 1.36
DDR1-267ENST00000512336 RIMBP3BA6NNM3 1639 aa23.52■■□□□ 1.36
DDR1-267ENST00000512336 RIMBP3Q9UFD9 1639 aa23.52■■□□□ 1.36
DDR1-267ENST00000512336 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
DDR1-267ENST00000512336 RSF1Q96T23 1441 aaPredicted RBP23.45■■□□□ 1.34
DDR1-267ENST00000512336 ZNF608Q9ULD9 1512 aaPredicted RBP23.41■■□□□ 1.34
DDR1-267ENST00000512336 ARHGEF11O15085 1522 aa23.4■■□□□ 1.34
DDR1-267ENST00000512336 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
DDR1-267ENST00000512336 PRDM2Q13029 1718 aa23.33■■□□□ 1.33
DDR1-267ENST00000512336 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
DDR1-267ENST00000512336 CYB5RLQ6IPT4 315 aa23.26■■□□□ 1.31
DDR1-267ENST00000512336 EIF4G3O43432 1585 aaKnown RBP23.24■■□□□ 1.31
DDR1-267ENST00000512336 CCDC88BA6NC98 1476 aa23.23■■□□□ 1.31
DDR1-267ENST00000512336 TRHP20396 242 aaPredicted RBP23.17■■□□□ 1.3
DDR1-267ENST00000512336 ARAP1Q96P48 1450 aa23.16■■□□□ 1.3
DDR1-267ENST00000512336 ABCC8Q09428 1581 aa23.14■■□□□ 1.3
DDR1-267ENST00000512336 CHD1O14646 1710 aa23.14■■□□□ 1.3
DDR1-267ENST00000512336 AQRO60306 1485 aaKnown RBP eCLIP23.14■■□□□ 1.294e-7■■■■■ 28.2
DDR1-267ENST00000512336 DNMBPQ6XZF7 1577 aa23.13■■□□□ 1.29
DDR1-267ENST00000512336 TARBP1Q13395 1621 aaKnown RBP23.1■■□□□ 1.29
DDR1-267ENST00000512336 FBLN2P98095 1184 aa23.08■■□□□ 1.29
DDR1-267ENST00000512336 POLA1P09884 1462 aaPredicted RBP23■■□□□ 1.27
DDR1-267ENST00000512336 RAD54L2Q9Y4B4 1467 aa22.95■■□□□ 1.26
DDR1-267ENST00000512336 TDRD9Q8NDG6 1382 aaKnown RBP22.91■■□□□ 1.26
DDR1-267ENST00000512336 CLASP1Q7Z460 1538 aa22.89■■□□□ 1.26
DDR1-267ENST00000512336 SNAPC4Q5SXM2 1469 aa22.89■■□□□ 1.25
DDR1-267ENST00000512336 SOGA1O94964 1423 aa22.89■■□□□ 1.25
DDR1-267ENST00000512336 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.25
DDR1-267ENST00000512336 SYNJ1O43426 1573 aa22.81■■□□□ 1.24
DDR1-267ENST00000512336 CHMP7Q8WUX9 453 aaPredicted RBP22.81■■□□□ 1.24
DDR1-267ENST00000512336 FGD5Q6ZNL6 1462 aa22.79■■□□□ 1.24
DDR1-267ENST00000512336 WDR97A6NE52 1622 aa22.79■■□□□ 1.24
DDR1-267ENST00000512336 MAGI1Q96QZ7 1491 aaPredicted RBP22.78■■□□□ 1.24
DDR1-267ENST00000512336 GRIN2BQ13224 1484 aa22.74■■□□□ 1.23
DDR1-267ENST00000512336 SYNJ2O15056 1496 aa22.72■■□□□ 1.23
DDR1-267ENST00000512336 CUX1P39880 1505 aa22.7■■□□□ 1.22
DDR1-267ENST00000512336 GAPVD1Q14C86 1478 aa22.68■■□□□ 1.22
DDR1-267ENST00000512336 PBRM1Q86U86 1689 aa22.61■■□□□ 1.21
DDR1-267ENST00000512336 ERCC6L2Q5T890 1561 aa22.53■■□□□ 1.2
DDR1-267ENST00000512336 ABCA5Q8WWZ7 1642 aa22.51■■□□□ 1.19
DDR1-267ENST00000512336 ABCA10Q8WWZ4 1543 aa22.5■■□□□ 1.19
DDR1-267ENST00000512336 GRIN2AQ12879 1464 aa22.46■■□□□ 1.19
DDR1-267ENST00000512336 CEP170Q5SW79 1584 aa22.42■■□□□ 1.18
DDR1-267ENST00000512336 NUP160Q12769 1436 aa22.4■■□□□ 1.18
DDR1-267ENST00000512336 ADAMTS12P58397 1594 aa22.38■■□□□ 1.17
DDR1-267ENST00000512336 SHROOM2Q13796 1616 aa22.33■■□□□ 1.17
DDR1-267ENST00000512336 WRNQ14191 1432 aaPredicted RBP eCLIP22.31■■□□□ 1.16
DDR1-267ENST00000512336 KIF13AQ9H1H9 1805 aa22.29■■□□□ 1.16
DDR1-267ENST00000512336 FHAD1B1AJZ9 1412 aa22.29■■□□□ 1.16
DDR1-267ENST00000512336 PRG4Q92954 1404 aaPredicted RBP22.23■■□□□ 1.15
DDR1-267ENST00000512336 ERICH3Q5RHP9 1530 aa22.2■■□□□ 1.14
DDR1-267ENST00000512336 BIVM-ERCC5R4GMW8 1640 aa22.19■■□□□ 1.14
DDR1-267ENST00000512336 TOP2BQ02880 1626 aa22.18■■□□□ 1.14
DDR1-267ENST00000512336 FAM69CQ0P6D2 419 aa22.16■■□□□ 1.14
DDR1-267ENST00000512336 JPH4Q96JJ6 628 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms