RNA–Protein interactions for RNA: ENST00000512304.2

PROM1-213, Transcript of prominin 1, humanhuman

TSL 4

Gene PROM1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-213ENST00000512304 NISCHQ9Y2I1 1504 aa23.65■■□□□ 1.38
PROM1-213ENST00000512304 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
PROM1-213ENST00000512304 ABCC9O60706 1549 aa22.14■■□□□ 1.13
PROM1-213ENST00000512304 CHIC1Q5VXU3 224 aa21.55■■□□□ 1.04
PROM1-213ENST00000512304 DNAJC5BQ9UF47 199 aa21.44■■□□□ 1.02
PROM1-213ENST00000512304 CCDC180Q9P1Z9 1646 aa21.23■□□□□ 0.99
PROM1-213ENST00000512304 PABPN1Q86U42 306 aaKnown RBP eCLIP20.65■□□□□ 0.9
PROM1-213ENST00000512304 RB1CC1Q8TDY2 1594 aa20.58■□□□□ 0.88
PROM1-213ENST00000512304 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
PROM1-213ENST00000512304 NACADO15069 1562 aa20.29■□□□□ 0.84
PROM1-213ENST00000512304 BICRAQ9NZM4 1560 aa20.16■□□□□ 0.82
PROM1-213ENST00000512304 UNC13AQ9UPW8 1703 aa20.07■□□□□ 0.8
PROM1-213ENST00000512304 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
PROM1-213ENST00000512304 DNAJC5Q9H3Z4 198 aa19.89■□□□□ 0.77
PROM1-213ENST00000512304 CC2D2AQ9P2K1 1620 aa19.84■□□□□ 0.77
PROM1-213ENST00000512304 MYO15BQ96JP2 1530 aa19.77■□□□□ 0.76
PROM1-213ENST00000512304 EIF4G1Q04637 1599 aaKnown RBP19.65■□□□□ 0.74
PROM1-213ENST00000512304 SCRIBQ14160 1630 aa19.58■□□□□ 0.72
PROM1-213ENST00000512304 SHROOM4Q9ULL8 1493 aa19.55■□□□□ 0.72
PROM1-213ENST00000512304 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
PROM1-213ENST00000512304 SENP3Q9H4L4 574 aaPredicted RBP19.47■□□□□ 0.71
PROM1-213ENST00000512304 DCAF1Q9Y4B6 1507 aa19.35■□□□□ 0.69
PROM1-213ENST00000512304 PHF23Q9BUL5 403 aaPredicted RBP19.18■□□□□ 0.66
PROM1-213ENST00000512304 CUX2O14529 1486 aa19.09■□□□□ 0.65
PROM1-213ENST00000512304 ERCC6Q03468 1493 aa19.03■□□□□ 0.64
PROM1-213ENST00000512304 NESP48681 1621 aa18.9■□□□□ 0.62
PROM1-213ENST00000512304 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
PROM1-213ENST00000512304 NCAPD3P42695 1498 aa18.84■□□□□ 0.61
PROM1-213ENST00000512304 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.59
PROM1-213ENST00000512304 THOC2Q8NI27 1593 aaKnown RBP18.64■□□□□ 0.57
PROM1-213ENST00000512304 SMARCA2P51531 1590 aa18.59■□□□□ 0.57
PROM1-213ENST00000512304 HMGXB3Q12766 1538 aa18.56■□□□□ 0.56
PROM1-213ENST00000512304 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
PROM1-213ENST00000512304 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
PROM1-213ENST00000512304 KIF21AQ7Z4S6 1674 aa18.42■□□□□ 0.54
PROM1-213ENST00000512304 LAMC3Q9Y6N6 1575 aa18.39■□□□□ 0.53
PROM1-213ENST00000512304 PDS5BQ9NTI5 1447 aa18.38■□□□□ 0.53
PROM1-213ENST00000512304 MROH2BQ7Z745 1585 aa18.32■□□□□ 0.52
PROM1-213ENST00000512304 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
PROM1-213ENST00000512304 MRC2Q9UBG0 1479 aa18.3■□□□□ 0.52
PROM1-213ENST00000512304 CADPSQ9ULU8 1353 aa18.29■□□□□ 0.52
PROM1-213ENST00000512304 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
PROM1-213ENST00000512304 WDR62O43379 1518 aa18.24■□□□□ 0.51
PROM1-213ENST00000512304 OSCARQ8IYS5 282 aa18.24■□□□□ 0.51
PROM1-213ENST00000512304 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
PROM1-213ENST00000512304 FANCD2Q9BXW9 1451 aa18.08■□□□□ 0.49
PROM1-213ENST00000512304 FOXD1Q16676 465 aa18.08■□□□□ 0.48
PROM1-213ENST00000512304 RIMBP3CA6NJZ7 1639 aa18.04■□□□□ 0.48
PROM1-213ENST00000512304 RIMBP3BA6NNM3 1639 aa18.04■□□□□ 0.48
PROM1-213ENST00000512304 RIMBP3Q9UFD9 1639 aa18.04■□□□□ 0.48
PROM1-213ENST00000512304 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
PROM1-213ENST00000512304 WIZO95785 1651 aa18.01■□□□□ 0.47
PROM1-213ENST00000512304 CYB5RLQ6IPT4 315 aa17.97■□□□□ 0.47
PROM1-213ENST00000512304 ARHGEF11O15085 1522 aa17.95■□□□□ 0.46
PROM1-213ENST00000512304 ZNF608Q9ULD9 1512 aaPredicted RBP17.95■□□□□ 0.46
PROM1-213ENST00000512304 CFTRP13569 1480 aa17.94■□□□□ 0.46
PROM1-213ENST00000512304 TRHP20396 242 aaPredicted RBP17.92■□□□□ 0.46
PROM1-213ENST00000512304 ARAP1Q96P48 1450 aa17.79■□□□□ 0.44
PROM1-213ENST00000512304 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
PROM1-213ENST00000512304 RSF1Q96T23 1441 aaPredicted RBP17.73■□□□□ 0.43
PROM1-213ENST00000512304 AQRO60306 1485 aaKnown RBP eCLIP17.71■□□□□ 0.43
PROM1-213ENST00000512304 FBLN2P98095 1184 aa17.71■□□□□ 0.43
PROM1-213ENST00000512304 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
PROM1-213ENST00000512304 TOPBP1Q92547 1522 aa17.67■□□□□ 0.42
PROM1-213ENST00000512304 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
PROM1-213ENST00000512304 CCDC88BA6NC98 1476 aa17.6■□□□□ 0.41
PROM1-213ENST00000512304 CHD1O14646 1710 aa17.58■□□□□ 0.4
PROM1-213ENST00000512304 TDRD9Q8NDG6 1382 aaKnown RBP17.53■□□□□ 0.4
PROM1-213ENST00000512304 RAD54L2Q9Y4B4 1467 aa17.53■□□□□ 0.4
PROM1-213ENST00000512304 TARBP1Q13395 1621 aaKnown RBP17.52■□□□□ 0.4
PROM1-213ENST00000512304 POLA1P09884 1462 aaPredicted RBP17.48■□□□□ 0.39
PROM1-213ENST00000512304 DNMBPQ6XZF7 1577 aa17.48■□□□□ 0.39
PROM1-213ENST00000512304 SNAPC4Q5SXM2 1469 aa17.44■□□□□ 0.38
PROM1-213ENST00000512304 CLASP1Q7Z460 1538 aa17.43■□□□□ 0.38
PROM1-213ENST00000512304 ABCC8Q09428 1581 aa17.41■□□□□ 0.38
PROM1-213ENST00000512304 PRDM2Q13029 1718 aa17.41■□□□□ 0.38
PROM1-213ENST00000512304 CHMP7Q8WUX9 453 aaPredicted RBP17.4■□□□□ 0.38
PROM1-213ENST00000512304 SOGA1O94964 1423 aa17.39■□□□□ 0.38
PROM1-213ENST00000512304 GAPVD1Q14C86 1478 aa17.33■□□□□ 0.37
PROM1-213ENST00000512304 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
PROM1-213ENST00000512304 ERCC6L2Q5T890 1561 aa17.28■□□□□ 0.36
PROM1-213ENST00000512304 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
PROM1-213ENST00000512304 PLPPR3Q6T4P5 718 aa17.27■□□□□ 0.36
PROM1-213ENST00000512304 SYNJ2O15056 1496 aa17.24■□□□□ 0.35
PROM1-213ENST00000512304 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
PROM1-213ENST00000512304 MAGI1Q96QZ7 1491 aaPredicted RBP17.24■□□□□ 0.35
PROM1-213ENST00000512304 CUX1P39880 1505 aa17.21■□□□□ 0.35
PROM1-213ENST00000512304 ILDR1Q86SU0 546 aaPredicted RBP17.15■□□□□ 0.34
PROM1-213ENST00000512304 KDM4FA0A1W2PPD8 638 aa17.11■□□□□ 0.33
PROM1-213ENST00000512304 WDR97A6NE52 1622 aa17.08■□□□□ 0.32
PROM1-213ENST00000512304 CEP170Q5SW79 1584 aa17.06■□□□□ 0.32
PROM1-213ENST00000512304 GRIN2AQ12879 1464 aa17.05■□□□□ 0.32
PROM1-213ENST00000512304 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
PROM1-213ENST00000512304 MSH5O43196 834 aa17.01■□□□□ 0.31
PROM1-213ENST00000512304 FAM69CQ0P6D2 419 aa17.01■□□□□ 0.31
PROM1-213ENST00000512304 NUP160Q12769 1436 aa17.01■□□□□ 0.31
PROM1-213ENST00000512304 PIAS4Q8N2W9 510 aaPredicted RBP17■□□□□ 0.31
PROM1-213ENST00000512304 ABCA10Q8WWZ4 1543 aa17■□□□□ 0.31
PROM1-213ENST00000512304 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
PROM1-213ENST00000512304 KIF13AQ9H1H9 1805 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms