RNA–Protein interactions for RNA: ENST00000512027.1

DDX41-213, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-213ENST00000512027 NISCHQ9Y2I1 1504 aa40.6■■■■■ 4.09
DDX41-213ENST00000512027 CCDC180Q9P1Z9 1646 aa36.22■■■■□ 3.39
DDX41-213ENST00000512027 ABCC9O60706 1549 aa35.73■■■■□ 3.31
DDX41-213ENST00000512027 RB1CC1Q8TDY2 1594 aa34.18■■■■□ 3.06
DDX41-213ENST00000512027 NACADO15069 1562 aa34.04■■■■□ 3.04
DDX41-213ENST00000512027 DCAF8L2P0C7V8 631 aa34.04■■■■□ 3.04
DDX41-213ENST00000512027 ZCCHC6Q5VYS8 1495 aaKnown RBP33.78■■■■□ 3
DDX41-213ENST00000512027 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
DDX41-213ENST00000512027 UNC13AQ9UPW8 1703 aa33.56■■■□□ 2.96
DDX41-213ENST00000512027 DCAF1Q9Y4B6 1507 aa33.51■■■□□ 2.95
DDX41-213ENST00000512027 PABPN1Q86U42 306 aaKnown RBP eCLIP33.32■■■□□ 2.926e-7■■■■■ 27.7
DDX41-213ENST00000512027 BICRAQ9NZM4 1560 aa33.23■■■□□ 2.91
DDX41-213ENST00000512027 SCRIBQ14160 1630 aa33.13■■■□□ 2.89
DDX41-213ENST00000512027 DNAJC5BQ9UF47 199 aa32.99■■■□□ 2.87
DDX41-213ENST00000512027 SHROOM4Q9ULL8 1493 aa32.68■■■□□ 2.82
DDX41-213ENST00000512027 EIF4G1Q04637 1599 aaKnown RBP32.34■■■□□ 2.77
DDX41-213ENST00000512027 CC2D2AQ9P2K1 1620 aa32.29■■■□□ 2.76
DDX41-213ENST00000512027 CECR2Q9BXF3 1484 aa32.07■■■□□ 2.72
DDX41-213ENST00000512027 SMARCA4P51532 1647 aa31.6■■■□□ 2.65
DDX41-213ENST00000512027 BAZ1AQ9NRL2 1556 aaPredicted RBP31.47■■■□□ 2.63
DDX41-213ENST00000512027 ATAD2BQ9ULI0 1458 aa31.44■■■□□ 2.62
DDX41-213ENST00000512027 NCAPD3P42695 1498 aa31.4■■■□□ 2.62
DDX41-213ENST00000512027 SMARCA2P51531 1590 aa31.36■■■□□ 2.61
DDX41-213ENST00000512027 MROH2BQ7Z745 1585 aa31.34■■■□□ 2.61
DDX41-213ENST00000512027 HMGXB3Q12766 1538 aa31.27■■■□□ 2.6
DDX41-213ENST00000512027 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
DDX41-213ENST00000512027 BAZ1BQ9UIG0 1483 aaKnown RBP31.18■■■□□ 2.58
DDX41-213ENST00000512027 WIZO95785 1651 aa31.04■■■□□ 2.56
DDX41-213ENST00000512027 NESP48681 1621 aa30.87■■■□□ 2.53
DDX41-213ENST00000512027 RSF1Q96T23 1441 aaPredicted RBP30.84■■■□□ 2.53
DDX41-213ENST00000512027 ERCC6Q03468 1493 aa30.76■■■□□ 2.51
DDX41-213ENST00000512027 LAMC3Q9Y6N6 1575 aa30.66■■■□□ 2.5
DDX41-213ENST00000512027 TOP2AP11388 1531 aaKnown RBP30.62■■■□□ 2.49
DDX41-213ENST00000512027 KIF21AQ7Z4S6 1674 aa30.54■■■□□ 2.48
DDX41-213ENST00000512027 CADPSQ9ULU8 1353 aa30.48■■■□□ 2.47
DDX41-213ENST00000512027 CUX2O14529 1486 aa30.45■■■□□ 2.47
DDX41-213ENST00000512027 THOC2Q8NI27 1593 aaKnown RBP30.44■■■□□ 2.46
DDX41-213ENST00000512027 PDS5BQ9NTI5 1447 aa30.4■■■□□ 2.46
DDX41-213ENST00000512027 CFTRP13569 1480 aa30.27■■■□□ 2.44
DDX41-213ENST00000512027 CCDC88BA6NC98 1476 aa30.25■■■□□ 2.43
DDX41-213ENST00000512027 FANCD2Q9BXW9 1451 aa30.19■■■□□ 2.42
DDX41-213ENST00000512027 MRC2Q9UBG0 1479 aa30.17■■■□□ 2.42
DDX41-213ENST00000512027 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
DDX41-213ENST00000512027 PRDM2Q13029 1718 aa30.13■■■□□ 2.41
DDX41-213ENST00000512027 WDR62O43379 1518 aa30.09■■■□□ 2.41
DDX41-213ENST00000512027 URB2Q14146 1524 aaKnown RBP29.94■■■□□ 2.38
DDX41-213ENST00000512027 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
DDX41-213ENST00000512027 DNAJC5Q9H3Z4 198 aa29.79■■■□□ 2.36
DDX41-213ENST00000512027 TOPBP1Q92547 1522 aa29.7■■■□□ 2.34
DDX41-213ENST00000512027 DNMBPQ6XZF7 1577 aa29.64■■■□□ 2.33
DDX41-213ENST00000512027 ABCC8Q09428 1581 aa29.56■■■□□ 2.32
DDX41-213ENST00000512027 IFT140Q96RY7 1462 aa29.51■■■□□ 2.31
DDX41-213ENST00000512027 ZNF608Q9ULD9 1512 aaPredicted RBP29.5■■■□□ 2.31
DDX41-213ENST00000512027 POLA1P09884 1462 aaPredicted RBP29.42■■■□□ 2.3
DDX41-213ENST00000512027 TARBP1Q13395 1621 aaKnown RBP29.42■■■□□ 2.3
DDX41-213ENST00000512027 CUX1P39880 1505 aa29.41■■■□□ 2.3
DDX41-213ENST00000512027 EIF4G3O43432 1585 aaKnown RBP29.39■■■□□ 2.3
DDX41-213ENST00000512027 RAD54L2Q9Y4B4 1467 aa29.35■■■□□ 2.29
DDX41-213ENST00000512027 FGD5Q6ZNL6 1462 aa29.34■■■□□ 2.29
DDX41-213ENST00000512027 AQRO60306 1485 aaKnown RBP eCLIP29.28■■■□□ 2.28
DDX41-213ENST00000512027 SOGA1O94964 1423 aa29.26■■■□□ 2.27
DDX41-213ENST00000512027 WDR97A6NE52 1622 aa29.16■■■□□ 2.26
DDX41-213ENST00000512027 TDRD9Q8NDG6 1382 aaKnown RBP29.16■■■□□ 2.26
DDX41-213ENST00000512027 OSCARQ8IYS5 282 aa29.12■■■□□ 2.25
DDX41-213ENST00000512027 SYNJ1O43426 1573 aa29.12■■■□□ 2.25
DDX41-213ENST00000512027 CHD1O14646 1710 aa29.11■■■□□ 2.25
DDX41-213ENST00000512027 BIVM-ERCC5R4GMW8 1640 aa29.1■■■□□ 2.25
DDX41-213ENST00000512027 WRNQ14191 1432 aaPredicted RBP eCLIP29.08■■■□□ 2.25
DDX41-213ENST00000512027 TOP2BQ02880 1626 aa29.08■■■□□ 2.25
DDX41-213ENST00000512027 PBRM1Q86U86 1689 aa29■■■□□ 2.23
DDX41-213ENST00000512027 SNAPC4Q5SXM2 1469 aa29■■■□□ 2.23
DDX41-213ENST00000512027 ABCA10Q8WWZ4 1543 aa28.99■■■□□ 2.23
DDX41-213ENST00000512027 ABCA5Q8WWZ7 1642 aa28.96■■■□□ 2.23
DDX41-213ENST00000512027 GRIN2BQ13224 1484 aa28.94■■■□□ 2.22
DDX41-213ENST00000512027 FBLN2P98095 1184 aa28.94■■■□□ 2.22
DDX41-213ENST00000512027 GAPVD1Q14C86 1478 aa28.93■■■□□ 2.22
DDX41-213ENST00000512027 MAGI1Q96QZ7 1491 aaPredicted RBP28.88■■■□□ 2.21
DDX41-213ENST00000512027 RIMBP3CA6NJZ7 1639 aa28.84■■■□□ 2.21
DDX41-213ENST00000512027 RIMBP3BA6NNM3 1639 aa28.84■■■□□ 2.21
DDX41-213ENST00000512027 RIMBP3Q9UFD9 1639 aa28.84■■■□□ 2.21
DDX41-213ENST00000512027 TRIM41Q8WV44 630 aa28.82■■■□□ 2.2
DDX41-213ENST00000512027 SYNJ2O15056 1496 aa28.78■■■□□ 2.2
DDX41-213ENST00000512027 CHMP7Q8WUX9 453 aaPredicted RBP28.77■■■□□ 2.2
DDX41-213ENST00000512027 ARHGEF11O15085 1522 aa28.76■■■□□ 2.19
DDX41-213ENST00000512027 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
DDX41-213ENST00000512027 CLASP1Q7Z460 1538 aa28.7■■■□□ 2.19
DDX41-213ENST00000512027 ERICH3Q5RHP9 1530 aa28.63■■■□□ 2.17
DDX41-213ENST00000512027 GRIN2AQ12879 1464 aa28.6■■■□□ 2.17
DDX41-213ENST00000512027 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
DDX41-213ENST00000512027 CEP170Q5SW79 1584 aa28.54■■■□□ 2.16
DDX41-213ENST00000512027 ARAP1Q96P48 1450 aa28.53■■■□□ 2.16
DDX41-213ENST00000512027 CYB5RLQ6IPT4 315 aa28.47■■■□□ 2.15
DDX41-213ENST00000512027 NUP160Q12769 1436 aa28.46■■■□□ 2.15
DDX41-213ENST00000512027 KIF27Q86VH2 1401 aa28.45■■■□□ 2.15
DDX41-213ENST00000512027 IGF1RP08069 1367 aa28.37■■■□□ 2.13
DDX41-213ENST00000512027 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
DDX41-213ENST00000512027 CUL7Q14999 1698 aa28.36■■■□□ 2.13
DDX41-213ENST00000512027 SHROOM2Q13796 1616 aa28.32■■■□□ 2.12
DDX41-213ENST00000512027 RUSC2Q8N2Y8 1516 aa28.3■■■□□ 2.12
DDX41-213ENST00000512027 CARMIL1Q5VZK9 1371 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms