RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, humanhuman

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-215ENST00000511843 NISCHQ9Y2I1 1504 aa32.74■■■□□ 2.83
RNF4-215ENST00000511843 CCDC180Q9P1Z9 1646 aa29.23■■■□□ 2.27
RNF4-215ENST00000511843 ABCC9O60706 1549 aa28.84■■■□□ 2.21
RNF4-215ENST00000511843 RB1CC1Q8TDY2 1594 aa27.59■■■□□ 2.01
RNF4-215ENST00000511843 DCAF8L2P0C7V8 631 aa27.48■■□□□ 1.99
RNF4-215ENST00000511843 NACADO15069 1562 aa27.48■■□□□ 1.99
RNF4-215ENST00000511843 ZCCHC6Q5VYS8 1495 aaKnown RBP27.23■■□□□ 1.95
RNF4-215ENST00000511843 MYO15BQ96JP2 1530 aa27.17■■□□□ 1.94
RNF4-215ENST00000511843 UNC13AQ9UPW8 1703 aa27.16■■□□□ 1.94
RNF4-215ENST00000511843 DCAF1Q9Y4B6 1507 aa27■■□□□ 1.91
RNF4-215ENST00000511843 PABPN1Q86U42 306 aaKnown RBP eCLIP26.91■■□□□ 1.9
RNF4-215ENST00000511843 BICRAQ9NZM4 1560 aa26.84■■□□□ 1.89
RNF4-215ENST00000511843 SCRIBQ14160 1630 aa26.75■■□□□ 1.87
RNF4-215ENST00000511843 DNAJC5BQ9UF47 199 aa26.66■■□□□ 1.86
RNF4-215ENST00000511843 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
RNF4-215ENST00000511843 EIF4G1Q04637 1599 aaKnown RBP26.11■■□□□ 1.77
RNF4-215ENST00000511843 CC2D2AQ9P2K1 1620 aa26.09■■□□□ 1.77
RNF4-215ENST00000511843 CECR2Q9BXF3 1484 aa25.89■■□□□ 1.73
RNF4-215ENST00000511843 SMARCA4P51532 1647 aa25.5■■□□□ 1.67
RNF4-215ENST00000511843 BAZ1AQ9NRL2 1556 aaPredicted RBP25.39■■□□□ 1.65
RNF4-215ENST00000511843 ATAD2BQ9ULI0 1458 aa25.35■■□□□ 1.65
RNF4-215ENST00000511843 NCAPD3P42695 1498 aa25.33■■□□□ 1.65
RNF4-215ENST00000511843 SMARCA2P51531 1590 aa25.31■■□□□ 1.64
RNF4-215ENST00000511843 MROH2BQ7Z745 1585 aa25.29■■□□□ 1.64
RNF4-215ENST00000511843 HMGXB3Q12766 1538 aa25.22■■□□□ 1.63
RNF4-215ENST00000511843 PEG3Q9GZU2 1588 aa25.18■■□□□ 1.62
RNF4-215ENST00000511843 BAZ1BQ9UIG0 1483 aaKnown RBP25.15■■□□□ 1.62
RNF4-215ENST00000511843 WIZO95785 1651 aa25.06■■□□□ 1.6
RNF4-215ENST00000511843 NESP48681 1621 aa24.93■■□□□ 1.58
RNF4-215ENST00000511843 RSF1Q96T23 1441 aaPredicted RBP24.86■■□□□ 1.57
RNF4-215ENST00000511843 ERCC6Q03468 1493 aa24.83■■□□□ 1.57
RNF4-215ENST00000511843 LAMC3Q9Y6N6 1575 aa24.75■■□□□ 1.55
RNF4-215ENST00000511843 TOP2AP11388 1531 aaKnown RBP24.69■■□□□ 1.54
RNF4-215ENST00000511843 KIF21AQ7Z4S6 1674 aa24.69■■□□□ 1.54
RNF4-215ENST00000511843 CUX2O14529 1486 aa24.59■■□□□ 1.53
RNF4-215ENST00000511843 THOC2Q8NI27 1593 aaKnown RBP24.59■■□□□ 1.53
RNF4-215ENST00000511843 CADPSQ9ULU8 1353 aa24.58■■□□□ 1.53
RNF4-215ENST00000511843 PDS5BQ9NTI5 1447 aa24.52■■□□□ 1.52
RNF4-215ENST00000511843 CFTRP13569 1480 aa24.41■■□□□ 1.5
RNF4-215ENST00000511843 CCDC88BA6NC98 1476 aa24.4■■□□□ 1.5
RNF4-215ENST00000511843 PRDM2Q13029 1718 aa24.36■■□□□ 1.49
RNF4-215ENST00000511843 FANCD2Q9BXW9 1451 aa24.36■■□□□ 1.49
RNF4-215ENST00000511843 MRC2Q9UBG0 1479 aa24.35■■□□□ 1.49
RNF4-215ENST00000511843 CEP164Q9UPV0 1460 aa24.34■■□□□ 1.49
RNF4-215ENST00000511843 WDR62O43379 1518 aa24.29■■□□□ 1.48
RNF4-215ENST00000511843 URB2Q14146 1524 aaKnown RBP24.17■■□□□ 1.46
RNF4-215ENST00000511843 SUPT5HO00267 1087 aaKnown RBP24.12■■□□□ 1.45
RNF4-215ENST00000511843 DNAJC5Q9H3Z4 198 aa24.09■■□□□ 1.45
RNF4-215ENST00000511843 TOPBP1Q92547 1522 aa23.96■■□□□ 1.43
RNF4-215ENST00000511843 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
RNF4-215ENST00000511843 ABCC8Q09428 1581 aa23.85■■□□□ 1.41
RNF4-215ENST00000511843 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
RNF4-215ENST00000511843 ZNF608Q9ULD9 1512 aaPredicted RBP23.81■■□□□ 1.4
RNF4-215ENST00000511843 TARBP1Q13395 1621 aaKnown RBP23.75■■□□□ 1.39
RNF4-215ENST00000511843 POLA1P09884 1462 aaPredicted RBP23.74■■□□□ 1.39
RNF4-215ENST00000511843 CUX1P39880 1505 aa23.74■■□□□ 1.39
RNF4-215ENST00000511843 EIF4G3O43432 1585 aaKnown RBP23.73■■□□□ 1.39
RNF4-215ENST00000511843 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
RNF4-215ENST00000511843 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
RNF4-215ENST00000511843 AQRO60306 1485 aaKnown RBP eCLIP23.62■■□□□ 1.373e-8■■■■■ 35.4
RNF4-215ENST00000511843 SOGA1O94964 1423 aa23.6■■□□□ 1.37
RNF4-215ENST00000511843 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
RNF4-215ENST00000511843 TDRD9Q8NDG6 1382 aaKnown RBP23.53■■□□□ 1.36
RNF4-215ENST00000511843 CHD1O14646 1710 aa23.53■■□□□ 1.36
RNF4-215ENST00000511843 OSCARQ8IYS5 282 aa23.52■■□□□ 1.36
RNF4-215ENST00000511843 SYNJ1O43426 1573 aa23.49■■□□□ 1.35
RNF4-215ENST00000511843 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
RNF4-215ENST00000511843 TOP2BQ02880 1626 aa23.45■■□□□ 1.34
RNF4-215ENST00000511843 WRNQ14191 1432 aaPredicted RBP eCLIP23.44■■□□□ 1.342e-6■■■■■ 29.9
RNF4-215ENST00000511843 PBRM1Q86U86 1689 aa23.43■■□□□ 1.34
RNF4-215ENST00000511843 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
RNF4-215ENST00000511843 ABCA10Q8WWZ4 1543 aa23.38■■□□□ 1.33
RNF4-215ENST00000511843 ABCA5Q8WWZ7 1642 aa23.37■■□□□ 1.33
RNF4-215ENST00000511843 FBLN2P98095 1184 aa23.37■■□□□ 1.33
RNF4-215ENST00000511843 GRIN2BQ13224 1484 aa23.35■■□□□ 1.33
RNF4-215ENST00000511843 GAPVD1Q14C86 1478 aa23.35■■□□□ 1.33
RNF4-215ENST00000511843 RIMBP3CA6NJZ7 1639 aa23.31■■□□□ 1.32
RNF4-215ENST00000511843 RIMBP3BA6NNM3 1639 aa23.31■■□□□ 1.32
RNF4-215ENST00000511843 RIMBP3Q9UFD9 1639 aa23.31■■□□□ 1.32
RNF4-215ENST00000511843 MAGI1Q96QZ7 1491 aaPredicted RBP23.3■■□□□ 1.32
RNF4-215ENST00000511843 TRIM41Q8WV44 630 aa23.3■■□□□ 1.32
RNF4-215ENST00000511843 SYNJ2O15056 1496 aa23.23■■□□□ 1.31
RNF4-215ENST00000511843 ARHGEF11O15085 1522 aa23.23■■□□□ 1.31
RNF4-215ENST00000511843 CHMP7Q8WUX9 453 aaPredicted RBP23.22■■□□□ 1.31
RNF4-215ENST00000511843 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
RNF4-215ENST00000511843 CLASP1Q7Z460 1538 aa23.17■■□□□ 1.3
RNF4-215ENST00000511843 ERICH3Q5RHP9 1530 aa23.09■■□□□ 1.29
RNF4-215ENST00000511843 GRIN2AQ12879 1464 aa23.07■■□□□ 1.28
RNF4-215ENST00000511843 FHAD1B1AJZ9 1412 aa23.04■■□□□ 1.28
RNF4-215ENST00000511843 ARAP1Q96P48 1450 aa23.04■■□□□ 1.28
RNF4-215ENST00000511843 CEP170Q5SW79 1584 aa23.03■■□□□ 1.28
RNF4-215ENST00000511843 CYB5RLQ6IPT4 315 aa23■■□□□ 1.27
RNF4-215ENST00000511843 NUP160Q12769 1436 aa22.95■■□□□ 1.26
RNF4-215ENST00000511843 KIF27Q86VH2 1401 aa22.94■■□□□ 1.26
RNF4-215ENST00000511843 ERCC6L2Q5T890 1561 aa22.91■■□□□ 1.26
RNF4-215ENST00000511843 CUL7Q14999 1698 aa22.89■■□□□ 1.25
RNF4-215ENST00000511843 IGF1RP08069 1367 aa22.88■■□□□ 1.25
RNF4-215ENST00000511843 SHROOM2Q13796 1616 aa22.86■■□□□ 1.25
RNF4-215ENST00000511843 RUSC2Q8N2Y8 1516 aa22.83■■□□□ 1.25
RNF4-215ENST00000511843 CARMIL1Q5VZK9 1371 aa22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms