RNA–Protein interactions for RNA: ENST00000511732.1

COL1A1-213, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 789 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-213ENST00000511732 NISCHQ9Y2I1 1504 aa38.18■■■■□ 3.7
COL1A1-213ENST00000511732 CCDC180Q9P1Z9 1646 aa34.15■■■■□ 3.06
COL1A1-213ENST00000511732 ABCC9O60706 1549 aa33.94■■■■□ 3.02
COL1A1-213ENST00000511732 RB1CC1Q8TDY2 1594 aa32.37■■■□□ 2.77
COL1A1-213ENST00000511732 NACADO15069 1562 aa32.22■■■□□ 2.75
COL1A1-213ENST00000511732 DCAF8L2P0C7V8 631 aa32.1■■■□□ 2.73
COL1A1-213ENST00000511732 MYO15BQ96JP2 1530 aa31.84■■■□□ 2.69
COL1A1-213ENST00000511732 UNC13AQ9UPW8 1703 aa31.74■■■□□ 2.67
COL1A1-213ENST00000511732 ZCCHC6Q5VYS8 1495 aaKnown RBP31.7■■■□□ 2.66
COL1A1-213ENST00000511732 DNAJC5BQ9UF47 199 aa31.69■■■□□ 2.66
COL1A1-213ENST00000511732 PABPN1Q86U42 306 aaKnown RBP eCLIP31.65■■■□□ 2.66
COL1A1-213ENST00000511732 DCAF1Q9Y4B6 1507 aa31.53■■■□□ 2.64
COL1A1-213ENST00000511732 BICRAQ9NZM4 1560 aa31.5■■■□□ 2.63
COL1A1-213ENST00000511732 SCRIBQ14160 1630 aa31.15■■■□□ 2.58
COL1A1-213ENST00000511732 SHROOM4Q9ULL8 1493 aa30.99■■■□□ 2.55
COL1A1-213ENST00000511732 CC2D2AQ9P2K1 1620 aa30.69■■■□□ 2.5
COL1A1-213ENST00000511732 EIF4G1Q04637 1599 aaKnown RBP30.67■■■□□ 2.5
COL1A1-213ENST00000511732 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
COL1A1-213ENST00000511732 NCAPD3P42695 1498 aa29.75■■■□□ 2.35
COL1A1-213ENST00000511732 SMARCA4P51532 1647 aa29.74■■■□□ 2.35
COL1A1-213ENST00000511732 ATAD2BQ9ULI0 1458 aa29.71■■■□□ 2.35
COL1A1-213ENST00000511732 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
COL1A1-213ENST00000511732 BAZ1AQ9NRL2 1556 aaPredicted RBP29.6■■■□□ 2.33
COL1A1-213ENST00000511732 HMGXB3Q12766 1538 aa29.55■■■□□ 2.32
COL1A1-213ENST00000511732 MROH2BQ7Z745 1585 aa29.45■■■□□ 2.31
COL1A1-213ENST00000511732 PEG3Q9GZU2 1588 aa29.44■■■□□ 2.3
COL1A1-213ENST00000511732 BAZ1BQ9UIG0 1483 aaKnown RBP29.41■■■□□ 2.3
COL1A1-213ENST00000511732 NESP48681 1621 aa29.26■■■□□ 2.27
COL1A1-213ENST00000511732 ERCC6Q03468 1493 aa29.24■■■□□ 2.27
COL1A1-213ENST00000511732 WIZO95785 1651 aa29.12■■■□□ 2.25
COL1A1-213ENST00000511732 CUX2O14529 1486 aa29.12■■■□□ 2.25
COL1A1-213ENST00000511732 LAMC3Q9Y6N6 1575 aa29.04■■■□□ 2.24
COL1A1-213ENST00000511732 RSF1Q96T23 1441 aaPredicted RBP28.91■■■□□ 2.22
COL1A1-213ENST00000511732 THOC2Q8NI27 1593 aaKnown RBP28.9■■■□□ 2.22
COL1A1-213ENST00000511732 KIF21AQ7Z4S6 1674 aa28.89■■■□□ 2.21
COL1A1-213ENST00000511732 DNAJC5Q9H3Z4 198 aa28.87■■■□□ 2.21
COL1A1-213ENST00000511732 CADPSQ9ULU8 1353 aa28.85■■■□□ 2.21
COL1A1-213ENST00000511732 PDS5BQ9NTI5 1447 aa28.83■■■□□ 2.21
COL1A1-213ENST00000511732 TOP2AP11388 1531 aaKnown RBP28.72■■■□□ 2.19
COL1A1-213ENST00000511732 MRC2Q9UBG0 1479 aa28.59■■■□□ 2.17
COL1A1-213ENST00000511732 CFTRP13569 1480 aa28.59■■■□□ 2.17
COL1A1-213ENST00000511732 WDR62O43379 1518 aa28.54■■■□□ 2.16
COL1A1-213ENST00000511732 FANCD2Q9BXW9 1451 aa28.53■■■□□ 2.16
COL1A1-213ENST00000511732 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
COL1A1-213ENST00000511732 CCDC88BA6NC98 1476 aa28.41■■■□□ 2.14
COL1A1-213ENST00000511732 PRDM2Q13029 1718 aa28.34■■■□□ 2.13
COL1A1-213ENST00000511732 URB2Q14146 1524 aaKnown RBP28.31■■■□□ 2.12
COL1A1-213ENST00000511732 TOPBP1Q92547 1522 aa28.02■■■□□ 2.08
COL1A1-213ENST00000511732 IFT140Q96RY7 1462 aa27.94■■■□□ 2.06
COL1A1-213ENST00000511732 DNMBPQ6XZF7 1577 aa27.94■■■□□ 2.06
COL1A1-213ENST00000511732 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
COL1A1-213ENST00000511732 ZNF608Q9ULD9 1512 aaPredicted RBP27.92■■■□□ 2.06
COL1A1-213ENST00000511732 OSCARQ8IYS5 282 aa27.83■■■□□ 2.05
COL1A1-213ENST00000511732 TARBP1Q13395 1621 aaKnown RBP27.78■■■□□ 2.04
COL1A1-213ENST00000511732 SUPT5HO00267 1087 aaKnown RBP27.77■■■□□ 2.04
COL1A1-213ENST00000511732 EIF4G3O43432 1585 aaKnown RBP27.77■■■□□ 2.04
COL1A1-213ENST00000511732 POLA1P09884 1462 aaPredicted RBP27.76■■■□□ 2.03
COL1A1-213ENST00000511732 TRIM41Q8WV44 630 aa27.69■■■□□ 2.02
COL1A1-213ENST00000511732 AQRO60306 1485 aaKnown RBP eCLIP27.69■■■□□ 2.02
COL1A1-213ENST00000511732 RAD54L2Q9Y4B4 1467 aa27.68■■■□□ 2.02
COL1A1-213ENST00000511732 CUX1P39880 1505 aa27.65■■■□□ 2.02
COL1A1-213ENST00000511732 FGD5Q6ZNL6 1462 aa27.62■■■□□ 2.01
COL1A1-213ENST00000511732 SOGA1O94964 1423 aa27.61■■■□□ 2.01
COL1A1-213ENST00000511732 TDRD9Q8NDG6 1382 aaKnown RBP27.55■■■□□ 2
COL1A1-213ENST00000511732 CHD1O14646 1710 aa27.54■■■□□ 2
COL1A1-213ENST00000511732 RIMBP3CA6NJZ7 1639 aa27.49■■□□□ 1.99
COL1A1-213ENST00000511732 RIMBP3BA6NNM3 1639 aa27.49■■□□□ 1.99
COL1A1-213ENST00000511732 RIMBP3Q9UFD9 1639 aa27.49■■□□□ 1.99
COL1A1-213ENST00000511732 WDR97A6NE52 1622 aa27.45■■□□□ 1.99
COL1A1-213ENST00000511732 FBLN2P98095 1184 aa27.42■■□□□ 1.98
COL1A1-213ENST00000511732 ARHGEF11O15085 1522 aa27.41■■□□□ 1.98
COL1A1-213ENST00000511732 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
COL1A1-213ENST00000511732 GRIN2BQ13224 1484 aa27.34■■□□□ 1.97
COL1A1-213ENST00000511732 MAGI1Q96QZ7 1491 aaPredicted RBP27.31■■□□□ 1.96
COL1A1-213ENST00000511732 ABCA10Q8WWZ4 1543 aa27.31■■□□□ 1.96
COL1A1-213ENST00000511732 PBRM1Q86U86 1689 aa27.3■■□□□ 1.96
COL1A1-213ENST00000511732 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
COL1A1-213ENST00000511732 ABCA5Q8WWZ7 1642 aa27.27■■□□□ 1.96
COL1A1-213ENST00000511732 BIVM-ERCC5R4GMW8 1640 aa27.27■■□□□ 1.96
COL1A1-213ENST00000511732 CHMP7Q8WUX9 453 aaPredicted RBP27.25■■□□□ 1.95
COL1A1-213ENST00000511732 TOP2BQ02880 1626 aa27.25■■□□□ 1.95
COL1A1-213ENST00000511732 SYNJ1O43426 1573 aa27.25■■□□□ 1.95
COL1A1-213ENST00000511732 WRNQ14191 1432 aaPredicted RBP eCLIP27.24■■□□□ 1.95
COL1A1-213ENST00000511732 SYNJ2O15056 1496 aa27.23■■□□□ 1.95
COL1A1-213ENST00000511732 CLASP1Q7Z460 1538 aa27.21■■□□□ 1.95
COL1A1-213ENST00000511732 CYB5RLQ6IPT4 315 aa27.19■■□□□ 1.94
COL1A1-213ENST00000511732 ARAP1Q96P48 1450 aa27.17■■□□□ 1.94
COL1A1-213ENST00000511732 ADAMTS12P58397 1594 aa27.03■■□□□ 1.92
COL1A1-213ENST00000511732 GRIN2AQ12879 1464 aa27■■□□□ 1.91
COL1A1-213ENST00000511732 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
COL1A1-213ENST00000511732 FHAD1B1AJZ9 1412 aa26.94■■□□□ 1.9
COL1A1-213ENST00000511732 CEP170Q5SW79 1584 aa26.93■■□□□ 1.9
COL1A1-213ENST00000511732 NUP160Q12769 1436 aa26.91■■□□□ 1.9
COL1A1-213ENST00000511732 ERCC6L2Q5T890 1561 aa26.84■■□□□ 1.89
COL1A1-213ENST00000511732 SHROOM2Q13796 1616 aa26.79■■□□□ 1.88
COL1A1-213ENST00000511732 TRHP20396 242 aaPredicted RBP26.78■■□□□ 1.88
COL1A1-213ENST00000511732 KIF27Q86VH2 1401 aa26.69■■□□□ 1.86
COL1A1-213ENST00000511732 IGF1RP08069 1367 aa26.69■■□□□ 1.86
COL1A1-213ENST00000511732 RUSC2Q8N2Y8 1516 aa26.65■■□□□ 1.86
COL1A1-213ENST00000511732 JPH4Q96JJ6 628 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms