RNA–Protein interactions for RNA: ENST00000511708.1

COPS4-210, Transcript of COP9 signalosome subunit 4, humanhuman

TSL 3

Gene COPS4, Length 824 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4-210ENST00000511708 NISCHQ9Y2I1 1504 aa31.28■■■□□ 2.6
COPS4-210ENST00000511708 ABCC9O60706 1549 aa29.05■■■□□ 2.24
COPS4-210ENST00000511708 CCDC180Q9P1Z9 1646 aa28.44■■■□□ 2.14
COPS4-210ENST00000511708 DNAJC5BQ9UF47 199 aa27.94■■■□□ 2.06
COPS4-210ENST00000511708 RB1CC1Q8TDY2 1594 aa27.37■■□□□ 1.97
COPS4-210ENST00000511708 NACADO15069 1562 aa27.02■■□□□ 1.92
COPS4-210ENST00000511708 PABPN1Q86U42 306 aaKnown RBP eCLIP26.89■■□□□ 1.9
COPS4-210ENST00000511708 UNC13AQ9UPW8 1703 aa26.85■■□□□ 1.89
COPS4-210ENST00000511708 BICRAQ9NZM4 1560 aa26.67■■□□□ 1.86
COPS4-210ENST00000511708 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
COPS4-210ENST00000511708 MYO15BQ96JP2 1530 aa26.45■■□□□ 1.83
COPS4-210ENST00000511708 CC2D2AQ9P2K1 1620 aa26.26■■□□□ 1.79
COPS4-210ENST00000511708 CECR2Q9BXF3 1484 aa26.26■■□□□ 1.79
COPS4-210ENST00000511708 SHROOM4Q9ULL8 1493 aa26.22■■□□□ 1.79
COPS4-210ENST00000511708 DNAJC5Q9H3Z4 198 aa26.19■■□□□ 1.78
COPS4-210ENST00000511708 EIF4G1Q04637 1599 aaKnown RBP26.03■■□□□ 1.76
COPS4-210ENST00000511708 DCAF1Q9Y4B6 1507 aa25.83■■□□□ 1.73
COPS4-210ENST00000511708 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
COPS4-210ENST00000511708 ZCCHC6Q5VYS8 1495 aaKnown RBP25.78■■□□□ 1.72
COPS4-210ENST00000511708 CUX2O14529 1486 aa25.39■■□□□ 1.65
COPS4-210ENST00000511708 ERCC6Q03468 1493 aa25.1■■□□□ 1.61
COPS4-210ENST00000511708 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
COPS4-210ENST00000511708 NESP48681 1621 aa24.77■■□□□ 1.56
COPS4-210ENST00000511708 ATAD2BQ9ULI0 1458 aa24.77■■□□□ 1.56
COPS4-210ENST00000511708 THOC2Q8NI27 1593 aaKnown RBP24.73■■□□□ 1.55
COPS4-210ENST00000511708 HMGXB3Q12766 1538 aa24.72■■□□□ 1.55
COPS4-210ENST00000511708 SMARCA2P51531 1590 aa24.65■■□□□ 1.54
COPS4-210ENST00000511708 TRIM41Q8WV44 630 aa24.63■■□□□ 1.53
COPS4-210ENST00000511708 SMARCA4P51532 1647 aa24.57■■□□□ 1.52
COPS4-210ENST00000511708 LAMC3Q9Y6N6 1575 aa24.51■■□□□ 1.51
COPS4-210ENST00000511708 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
COPS4-210ENST00000511708 BAZ1BQ9UIG0 1483 aaKnown RBP24.45■■□□□ 1.51
COPS4-210ENST00000511708 PEG3Q9GZU2 1588 aa24.37■■□□□ 1.49
COPS4-210ENST00000511708 PDS5BQ9NTI5 1447 aa24.35■■□□□ 1.49
COPS4-210ENST00000511708 BAZ1AQ9NRL2 1556 aaPredicted RBP24.32■■□□□ 1.48
COPS4-210ENST00000511708 WDR62O43379 1518 aa24.2■■□□□ 1.47
COPS4-210ENST00000511708 MRC2Q9UBG0 1479 aa24.2■■□□□ 1.47
COPS4-210ENST00000511708 CADPSQ9ULU8 1353 aa24.13■■□□□ 1.45
COPS4-210ENST00000511708 MROH2BQ7Z745 1585 aa24.09■■□□□ 1.45
COPS4-210ENST00000511708 OSCARQ8IYS5 282 aa24.03■■□□□ 1.44
COPS4-210ENST00000511708 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
COPS4-210ENST00000511708 RIMBP3CA6NJZ7 1639 aa23.88■■□□□ 1.41
COPS4-210ENST00000511708 RIMBP3BA6NNM3 1639 aa23.88■■□□□ 1.41
COPS4-210ENST00000511708 RIMBP3Q9UFD9 1639 aa23.88■■□□□ 1.41
COPS4-210ENST00000511708 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
COPS4-210ENST00000511708 WIZO95785 1651 aa23.76■■□□□ 1.39
COPS4-210ENST00000511708 URB2Q14146 1524 aaKnown RBP23.74■■□□□ 1.39
COPS4-210ENST00000511708 CFTRP13569 1480 aa23.73■■□□□ 1.39
COPS4-210ENST00000511708 ARHGEF11O15085 1522 aa23.71■■□□□ 1.39
COPS4-210ENST00000511708 ZNF608Q9ULD9 1512 aaPredicted RBP23.54■■□□□ 1.36
COPS4-210ENST00000511708 IFT140Q96RY7 1462 aa23.5■■□□□ 1.35
COPS4-210ENST00000511708 CYB5RLQ6IPT4 315 aa23.5■■□□□ 1.35
COPS4-210ENST00000511708 PRDM2Q13029 1718 aa23.5■■□□□ 1.35
COPS4-210ENST00000511708 ARAP1Q96P48 1450 aa23.44■■□□□ 1.34
COPS4-210ENST00000511708 TRHP20396 242 aaPredicted RBP23.43■■□□□ 1.34
COPS4-210ENST00000511708 TOP2AP11388 1531 aaKnown RBP23.41■■□□□ 1.34
COPS4-210ENST00000511708 EIF4G3O43432 1585 aaKnown RBP23.4■■□□□ 1.34
COPS4-210ENST00000511708 CHD1O14646 1710 aa23.38■■□□□ 1.33
COPS4-210ENST00000511708 TOPBP1Q92547 1522 aa23.34■■□□□ 1.33
COPS4-210ENST00000511708 RSF1Q96T23 1441 aaPredicted RBP23.33■■□□□ 1.32
COPS4-210ENST00000511708 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
COPS4-210ENST00000511708 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
COPS4-210ENST00000511708 TARBP1Q13395 1621 aaKnown RBP23.23■■□□□ 1.31
COPS4-210ENST00000511708 AQRO60306 1485 aaKnown RBP eCLIP23.22■■□□□ 1.31
COPS4-210ENST00000511708 DNMBPQ6XZF7 1577 aa23.2■■□□□ 1.3
COPS4-210ENST00000511708 CCDC88BA6NC98 1476 aa23.14■■□□□ 1.29
COPS4-210ENST00000511708 FBLN2P98095 1184 aa23.11■■□□□ 1.29
COPS4-210ENST00000511708 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
COPS4-210ENST00000511708 POLA1P09884 1462 aaPredicted RBP23.05■■□□□ 1.28
COPS4-210ENST00000511708 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
COPS4-210ENST00000511708 SNAPC4Q5SXM2 1469 aa22.96■■□□□ 1.27
COPS4-210ENST00000511708 RAD54L2Q9Y4B4 1467 aa22.96■■□□□ 1.27
COPS4-210ENST00000511708 WDR97A6NE52 1622 aa22.94■■□□□ 1.26
COPS4-210ENST00000511708 TDRD9Q8NDG6 1382 aaKnown RBP22.94■■□□□ 1.26
COPS4-210ENST00000511708 SOGA1O94964 1423 aa22.9■■□□□ 1.26
COPS4-210ENST00000511708 MAGI1Q96QZ7 1491 aaPredicted RBP22.89■■□□□ 1.25
COPS4-210ENST00000511708 CHMP7Q8WUX9 453 aaPredicted RBP22.86■■□□□ 1.25
COPS4-210ENST00000511708 GAPVD1Q14C86 1478 aa22.85■■□□□ 1.25
COPS4-210ENST00000511708 SYNJ2O15056 1496 aa22.82■■□□□ 1.24
COPS4-210ENST00000511708 GRIN2BQ13224 1484 aa22.8■■□□□ 1.24
COPS4-210ENST00000511708 FGD5Q6ZNL6 1462 aa22.79■■□□□ 1.24
COPS4-210ENST00000511708 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
COPS4-210ENST00000511708 CUX1P39880 1505 aa22.67■■□□□ 1.22
COPS4-210ENST00000511708 ERCC6L2Q5T890 1561 aa22.67■■□□□ 1.22
COPS4-210ENST00000511708 KIF13AQ9H1H9 1805 aa22.64■■□□□ 1.22
COPS4-210ENST00000511708 ABCA5Q8WWZ7 1642 aa22.57■■□□□ 1.2
COPS4-210ENST00000511708 CEP170Q5SW79 1584 aa22.56■■□□□ 1.2
COPS4-210ENST00000511708 SHROOM2Q13796 1616 aa22.52■■□□□ 1.2
COPS4-210ENST00000511708 GRIN2AQ12879 1464 aa22.52■■□□□ 1.2
COPS4-210ENST00000511708 ABCA10Q8WWZ4 1543 aa22.52■■□□□ 1.19
COPS4-210ENST00000511708 NUP160Q12769 1436 aa22.5■■□□□ 1.19
COPS4-210ENST00000511708 ADAMTS12P58397 1594 aa22.44■■□□□ 1.18
COPS4-210ENST00000511708 ILDR1Q86SU0 546 aaPredicted RBP22.43■■□□□ 1.18
COPS4-210ENST00000511708 KDM4FA0A1W2PPD8 638 aa22.38■■□□□ 1.17
COPS4-210ENST00000511708 ABCC10Q5T3U5 1492 aa22.36■■□□□ 1.17
COPS4-210ENST00000511708 DIP2BQ9P265 1576 aa22.31■■□□□ 1.16
COPS4-210ENST00000511708 MAPKBP1O60336 1514 aa22.31■■□□□ 1.16
COPS4-210ENST00000511708 FHAD1B1AJZ9 1412 aa22.31■■□□□ 1.16
COPS4-210ENST00000511708 FAM69CQ0P6D2 419 aa22.3■■□□□ 1.16
COPS4-210ENST00000511708 KDM6BO15054 1643 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms