RNA–Protein interactions for RNA: ENST00000511665.1

HMCES-208, Transcript of 5-hydroxymethylcytosine binding, ES cell specific, human

TSL 5

Gene HMCES, Length 643 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMCES-208	ENST00000511665	NISCH	Q9Y2I1	1504 aa		59.4	■■■■■ 7.1
HMCES-208	ENST00000511665	CCDC180	Q9P1Z9	1646 aa		52.99	■■■■■ 6.07
HMCES-208	ENST00000511665	ABCC9	O60706	1549 aa		52.71	■■■■■ 6.03
HMCES-208	ENST00000511665	RB1CC1	Q8TDY2	1594 aa		50.32	■■■■■ 5.65
HMCES-208	ENST00000511665	DCAF8L2	P0C7V8	631 aa		50.2	■■■■■ 5.63
HMCES-208	ENST00000511665	NACAD	O15069	1562 aa		50.09	■■■■■ 5.61
HMCES-208	ENST00000511665	MYO15B	Q96JP2	1530 aa		49.53	■■■■■ 5.52
HMCES-208	ENST00000511665	ZCCHC6	Q5VYS8	1495 aa	Known RBP	49.28	■■■■■ 5.48
HMCES-208	ENST00000511665	PABPN1	Q86U42	306 aa	Known RBP eCLIP	49.26	■■■■■ 5.48
HMCES-208	ENST00000511665	DNAJC5B	Q9UF47	199 aa		49.14	■■■■■ 5.46
HMCES-208	ENST00000511665	UNC13A	Q9UPW8	1703 aa		49.06	■■■■■ 5.44
HMCES-208	ENST00000511665	DCAF1	Q9Y4B6	1507 aa		49.06	■■■■■ 5.44
HMCES-208	ENST00000511665	BICRA	Q9NZM4	1560 aa		48.8	■■■■■ 5.4
HMCES-208	ENST00000511665	SCRIB	Q14160	1630 aa		48.38	■■■■■ 5.34
HMCES-208	ENST00000511665	SHROOM4	Q9ULL8	1493 aa		48.18	■■■■■ 5.3
HMCES-208	ENST00000511665	EIF4G1	Q04637	1599 aa	Known RBP	47.59	■■■■■ 5.21
HMCES-208	ENST00000511665	CC2D2A	Q9P2K1	1620 aa		47.58	■■■■■ 5.21
HMCES-208	ENST00000511665	CECR2	Q9BXF3	1484 aa		47.44	■■■■■ 5.18
HMCES-208	ENST00000511665	NCAPD3	P42695	1498 aa		46.29	■■■■■ 5
HMCES-208	ENST00000511665	ATAD2B	Q9ULI0	1458 aa		46.19	■■■■■ 4.99
HMCES-208	ENST00000511665	SMARCA4	P51532	1647 aa		46.19	■■■■■ 4.98
HMCES-208	ENST00000511665	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	46.07	■■■■■ 4.97
HMCES-208	ENST00000511665	SMARCA2	P51531	1590 aa		46.06	■■■■■ 4.96
HMCES-208	ENST00000511665	HMGXB3	Q12766	1538 aa		45.89	■■■■■ 4.94
HMCES-208	ENST00000511665	MROH2B	Q7Z745	1585 aa		45.78	■■■■■ 4.92
HMCES-208	ENST00000511665	BAZ1B	Q9UIG0	1483 aa	Known RBP	45.77	■■■■■ 4.92
HMCES-208	ENST00000511665	PEG3	Q9GZU2	1588 aa		45.73	■■■■■ 4.91
HMCES-208	ENST00000511665	ERCC6	Q03468	1493 aa		45.5	■■■■■ 4.87
HMCES-208	ENST00000511665	NES	P48681	1621 aa		45.4	■■■■■ 4.86
HMCES-208	ENST00000511665	WIZ	O95785	1651 aa		45.22	■■■■■ 4.83
HMCES-208	ENST00000511665	CUX2	O14529	1486 aa		45.22	■■■■■ 4.83
HMCES-208	ENST00000511665	LAMC3	Q9Y6N6	1575 aa		45.11	■■■■■ 4.81
HMCES-208	ENST00000511665	RSF1	Q96T23	1441 aa	Predicted RBP	45.04	■■■■■ 4.8
HMCES-208	ENST00000511665	CADPS	Q9ULU8	1353 aa		44.94	■■■■■ 4.79
HMCES-208	ENST00000511665	PDS5B	Q9NTI5	1447 aa		44.93	■■■■■ 4.78
HMCES-208	ENST00000511665	DNAJC5	Q9H3Z4	198 aa		44.82	■■■■■ 4.77
HMCES-208	ENST00000511665	THOC2	Q8NI27	1593 aa	Known RBP	44.73	■■■■■ 4.75
HMCES-208	ENST00000511665	KIF21A	Q7Z4S6	1674 aa		44.72	■■■■■ 4.75
HMCES-208	ENST00000511665	TOP2A	P11388	1531 aa	Known RBP	44.67	■■■■■ 4.74
HMCES-208	ENST00000511665	CFTR	P13569	1480 aa		44.47	■■■■■ 4.71
HMCES-208	ENST00000511665	MRC2	Q9UBG0	1479 aa		44.45	■■■■■ 4.71
HMCES-208	ENST00000511665	FANCD2	Q9BXW9	1451 aa		44.39	■■■■■ 4.7
HMCES-208	ENST00000511665	CEP164	Q9UPV0	1460 aa		44.37	■■■■■ 4.69
HMCES-208	ENST00000511665	WDR62	O43379	1518 aa		44.28	■■■■■ 4.68
HMCES-208	ENST00000511665	CCDC88B	A6NC98	1476 aa		44.25	■■■■■ 4.67
HMCES-208	ENST00000511665	URB2	Q14146	1524 aa	Known RBP	43.96	■■■■■ 4.63
HMCES-208	ENST00000511665	PRDM2	Q13029	1718 aa		43.88	■■■■■ 4.62
HMCES-208	ENST00000511665	TOPBP1	Q92547	1522 aa		43.58	■■■■■ 4.57
HMCES-208	ENST00000511665	ABCC8	Q09428	1581 aa		43.55	■■■■■ 4.56
HMCES-208	ENST00000511665	SUPT5H	O00267	1087 aa	Known RBP	43.54	■■■■■ 4.56
HMCES-208	ENST00000511665	IFT140	Q96RY7	1462 aa		43.49	■■■■■ 4.55
HMCES-208	ENST00000511665	DNMBP	Q6XZF7	1577 aa		43.41	■■■■■ 4.54
HMCES-208	ENST00000511665	OSCAR	Q8IYS5	282 aa		43.4	■■■■■ 4.54
HMCES-208	ENST00000511665	ZNF608	Q9ULD9	1512 aa	Predicted RBP	43.36	■■■■■ 4.53
HMCES-208	ENST00000511665	POLA1	P09884	1462 aa	Predicted RBP	43.16	■■■■■ 4.5
HMCES-208	ENST00000511665	TARBP1	Q13395	1621 aa	Known RBP	43.09	■■■■■ 4.49
HMCES-208	ENST00000511665	AQR	O60306	1485 aa	Known RBP eCLIP	43.08	■■■■■ 4.49	2e-6	■■■■■ 26.8
HMCES-208	ENST00000511665	TRIM41	Q8WV44	630 aa		43.07	■■■■■ 4.49
HMCES-208	ENST00000511665	SOGA1	O94964	1423 aa		43.06	■■■■■ 4.48
HMCES-208	ENST00000511665	EIF4G3	O43432	1585 aa	Known RBP	43.06	■■■■■ 4.48
HMCES-208	ENST00000511665	RAD54L2	Q9Y4B4	1467 aa		43.04	■■■■■ 4.48
HMCES-208	ENST00000511665	CUX1	P39880	1505 aa		42.97	■■■■■ 4.47
HMCES-208	ENST00000511665	FGD5	Q6ZNL6	1462 aa		42.95	■■■■■ 4.47
HMCES-208	ENST00000511665	TDRD9	Q8NDG6	1382 aa	Known RBP	42.92	■■■■■ 4.46
HMCES-208	ENST00000511665	FBLN2	P98095	1184 aa		42.83	■■■■■ 4.45
HMCES-208	ENST00000511665	WDR97	A6NE52	1622 aa		42.68	■■■■■ 4.42
HMCES-208	ENST00000511665	CHD1	O14646	1710 aa		42.64	■■■■■ 4.42
HMCES-208	ENST00000511665	SNAPC4	Q5SXM2	1469 aa		42.6	■■■■■ 4.41
HMCES-208	ENST00000511665	RIMBP3C	A6NJZ7	1639 aa		42.58	■■■■■ 4.41
HMCES-208	ENST00000511665	RIMBP3B	A6NNM3	1639 aa		42.58	■■■■■ 4.41
HMCES-208	ENST00000511665	RIMBP3	Q9UFD9	1639 aa		42.58	■■■■■ 4.41
HMCES-208	ENST00000511665	GRIN2B	Q13224	1484 aa		42.58	■■■■■ 4.41
HMCES-208	ENST00000511665	CHMP7	Q8WUX9	453 aa	Predicted RBP	42.57	■■■■■ 4.41
HMCES-208	ENST00000511665	ARHGEF11	O15085	1522 aa		42.52	■■■■■ 4.4
HMCES-208	ENST00000511665	GAPVD1	Q14C86	1478 aa		42.49	■■■■■ 4.39
HMCES-208	ENST00000511665	MAGI1	Q96QZ7	1491 aa	Predicted RBP	42.49	■■■■■ 4.39
HMCES-208	ENST00000511665	WRN	Q14191	1432 aa	Predicted RBP eCLIP	42.49	■■■■■ 4.39
HMCES-208	ENST00000511665	ABCA10	Q8WWZ4	1543 aa		42.49	■■■■■ 4.39
HMCES-208	ENST00000511665	TOP2B	Q02880	1626 aa		42.38	■■■■■ 4.38
HMCES-208	ENST00000511665	SYNJ2	O15056	1496 aa		42.37	■■■■■ 4.37
HMCES-208	ENST00000511665	CYB5RL	Q6IPT4	315 aa		42.36	■■■■■ 4.37
HMCES-208	ENST00000511665	BIVM-ERCC5	R4GMW8	1640 aa		42.34	■■■■■ 4.37
HMCES-208	ENST00000511665	SYNJ1	O43426	1573 aa		42.33	■■■■■ 4.37
HMCES-208	ENST00000511665	PBRM1	Q86U86	1689 aa		42.31	■■■■■ 4.36
HMCES-208	ENST00000511665	ABCA5	Q8WWZ7	1642 aa		42.3	■■■■■ 4.36
HMCES-208	ENST00000511665	CLASP1	Q7Z460	1538 aa		42.2	■■■■■ 4.35
HMCES-208	ENST00000511665	ARAP1	Q96P48	1450 aa		42.14	■■■■■ 4.34
HMCES-208	ENST00000511665	GRIN2A	Q12879	1464 aa		42	■■■■■ 4.31
HMCES-208	ENST00000511665	FHAD1	B1AJZ9	1412 aa		41.98	■■■■■ 4.31
HMCES-208	ENST00000511665	ADAMTS12	P58397	1594 aa		41.96	■■■■■ 4.31
HMCES-208	ENST00000511665	ERICH3	Q5RHP9	1530 aa		41.95	■■■■■ 4.31
HMCES-208	ENST00000511665	NUP160	Q12769	1436 aa		41.84	■■■■■ 4.29
HMCES-208	ENST00000511665	CEP170	Q5SW79	1584 aa		41.79	■■■■■ 4.28
HMCES-208	ENST00000511665	TRH	P20396	242 aa	Predicted RBP	41.77	■■■■■ 4.28
HMCES-208	ENST00000511665	KIF27	Q86VH2	1401 aa		41.67	■■■■■ 4.26
HMCES-208	ENST00000511665	IGF1R	P08069	1367 aa		41.64	■■■■■ 4.26
HMCES-208	ENST00000511665	ERCC6L2	Q5T890	1561 aa		41.6	■■■■■ 4.25
HMCES-208	ENST00000511665	JPH4	Q96JJ6	628 aa		41.58	■■■■■ 4.25
HMCES-208	ENST00000511665	SHROOM2	Q13796	1616 aa		41.53	■■■■■ 4.24
HMCES-208	ENST00000511665	PRG4	Q92954	1404 aa	Predicted RBP	41.47	■■■■■ 4.23

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms