RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-208ENST00000511001 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
CHFR-208ENST00000511001 CCDC180Q9P1Z9 1646 aa26.79■■□□□ 1.88
CHFR-208ENST00000511001 ABCC9O60706 1549 aa26.46■■□□□ 1.83
CHFR-208ENST00000511001 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
CHFR-208ENST00000511001 NACADO15069 1562 aa25.22■■□□□ 1.63
CHFR-208ENST00000511001 DCAF8L2P0C7V8 631 aa25.05■■□□□ 1.6
CHFR-208ENST00000511001 DNAJC5BQ9UF47 199 aa25■■□□□ 1.59
CHFR-208ENST00000511001 MYO15BQ96JP2 1530 aa24.98■■□□□ 1.59
CHFR-208ENST00000511001 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.58
CHFR-208ENST00000511001 UNC13AQ9UPW8 1703 aa24.88■■□□□ 1.57
CHFR-208ENST00000511001 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
CHFR-208ENST00000511001 PABPN1Q86U42 306 aaKnown RBP eCLIP24.66■■□□□ 1.54
CHFR-208ENST00000511001 BICRAQ9NZM4 1560 aa24.64■■□□□ 1.54
CHFR-208ENST00000511001 SCRIBQ14160 1630 aa24.4■■□□□ 1.5
CHFR-208ENST00000511001 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
CHFR-208ENST00000511001 EIF4G1Q04637 1599 aaKnown RBP23.97■■□□□ 1.43
CHFR-208ENST00000511001 CC2D2AQ9P2K1 1620 aa23.95■■□□□ 1.43
CHFR-208ENST00000511001 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
CHFR-208ENST00000511001 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
CHFR-208ENST00000511001 NCAPD3P42695 1498 aa23.28■■□□□ 1.32
CHFR-208ENST00000511001 ATAD2BQ9ULI0 1458 aa23.25■■□□□ 1.31
CHFR-208ENST00000511001 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
CHFR-208ENST00000511001 SMARCA2P51531 1590 aa23.19■■□□□ 1.3
CHFR-208ENST00000511001 DNAJC5Q9H3Z4 198 aa23.18■■□□□ 1.3
CHFR-208ENST00000511001 HMGXB3Q12766 1538 aa23.15■■□□□ 1.3
CHFR-208ENST00000511001 MROH2BQ7Z745 1585 aa23.1■■□□□ 1.29
CHFR-208ENST00000511001 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
CHFR-208ENST00000511001 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
CHFR-208ENST00000511001 WIZO95785 1651 aa22.86■■□□□ 1.25
CHFR-208ENST00000511001 CUX2O14529 1486 aa22.85■■□□□ 1.25
CHFR-208ENST00000511001 NESP48681 1621 aa22.84■■□□□ 1.25
CHFR-208ENST00000511001 ERCC6Q03468 1493 aa22.79■■□□□ 1.24
CHFR-208ENST00000511001 LAMC3Q9Y6N6 1575 aa22.72■■□□□ 1.23
CHFR-208ENST00000511001 RSF1Q96T23 1441 aaPredicted RBP22.7■■□□□ 1.22
CHFR-208ENST00000511001 KIF21AQ7Z4S6 1674 aa22.6■■□□□ 1.21
CHFR-208ENST00000511001 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
CHFR-208ENST00000511001 CADPSQ9ULU8 1353 aa22.57■■□□□ 1.2
CHFR-208ENST00000511001 TOP2AP11388 1531 aaKnown RBP22.56■■□□□ 1.2
CHFR-208ENST00000511001 PDS5BQ9NTI5 1447 aa22.53■■□□□ 1.2
CHFR-208ENST00000511001 CFTRP13569 1480 aa22.39■■□□□ 1.17
CHFR-208ENST00000511001 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
CHFR-208ENST00000511001 FANCD2Q9BXW9 1451 aa22.31■■□□□ 1.16
CHFR-208ENST00000511001 WDR62O43379 1518 aa22.31■■□□□ 1.16
CHFR-208ENST00000511001 CEP164Q9UPV0 1460 aa22.3■■□□□ 1.16
CHFR-208ENST00000511001 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
CHFR-208ENST00000511001 PRDM2Q13029 1718 aa22.28■■□□□ 1.16
CHFR-208ENST00000511001 URB2Q14146 1524 aaKnown RBP22.15■■□□□ 1.14
CHFR-208ENST00000511001 TRIM41Q8WV44 630 aa22.08■■□□□ 1.13
CHFR-208ENST00000511001 TOPBP1Q92547 1522 aa21.95■■□□□ 1.1
CHFR-208ENST00000511001 DNMBPQ6XZF7 1577 aa21.9■■□□□ 1.1
CHFR-208ENST00000511001 ABCC8Q09428 1581 aa21.88■■□□□ 1.09
CHFR-208ENST00000511001 IFT140Q96RY7 1462 aa21.85■■□□□ 1.09
CHFR-208ENST00000511001 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.09
CHFR-208ENST00000511001 ZNF608Q9ULD9 1512 aaPredicted RBP21.81■■□□□ 1.08
CHFR-208ENST00000511001 TARBP1Q13395 1621 aaKnown RBP21.77■■□□□ 1.07
CHFR-208ENST00000511001 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
CHFR-208ENST00000511001 EIF4G3O43432 1585 aaKnown RBP21.72■■□□□ 1.07
CHFR-208ENST00000511001 CUX1P39880 1505 aa21.69■■□□□ 1.06
CHFR-208ENST00000511001 OSCARQ8IYS5 282 aa21.67■■□□□ 1.06
CHFR-208ENST00000511001 RAD54L2Q9Y4B4 1467 aa21.65■■□□□ 1.06
CHFR-208ENST00000511001 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.05
CHFR-208ENST00000511001 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
CHFR-208ENST00000511001 SOGA1O94964 1423 aa21.61■■□□□ 1.05
CHFR-208ENST00000511001 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
CHFR-208ENST00000511001 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
CHFR-208ENST00000511001 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
CHFR-208ENST00000511001 CHD1O14646 1710 aa21.55■■□□□ 1.04
CHFR-208ENST00000511001 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
CHFR-208ENST00000511001 TDRD9Q8NDG6 1382 aaKnown RBP21.53■■□□□ 1.04
CHFR-208ENST00000511001 ARHGEF11O15085 1522 aa21.44■■□□□ 1.02
CHFR-208ENST00000511001 BIVM-ERCC5R4GMW8 1640 aa21.44■■□□□ 1.02
CHFR-208ENST00000511001 SNAPC4Q5SXM2 1469 aa21.43■■□□□ 1.02
CHFR-208ENST00000511001 PBRM1Q86U86 1689 aa21.41■■□□□ 1.02
CHFR-208ENST00000511001 TOP2BQ02880 1626 aa21.41■■□□□ 1.02
CHFR-208ENST00000511001 ABCA10Q8WWZ4 1543 aa21.41■■□□□ 1.02
CHFR-208ENST00000511001 SYNJ1O43426 1573 aa21.4■■□□□ 1.02
CHFR-208ENST00000511001 GRIN2BQ13224 1484 aa21.39■■□□□ 1.02
CHFR-208ENST00000511001 ABCA5Q8WWZ7 1642 aa21.39■■□□□ 1.01
CHFR-208ENST00000511001 WRNQ14191 1432 aaPredicted RBP eCLIP21.38■■□□□ 1.01
CHFR-208ENST00000511001 MAGI1Q96QZ7 1491 aaPredicted RBP21.38■■□□□ 1.01
CHFR-208ENST00000511001 GAPVD1Q14C86 1478 aa21.37■■□□□ 1.01
CHFR-208ENST00000511001 FBLN2P98095 1184 aa21.36■■□□□ 1.01
CHFR-208ENST00000511001 SYNJ2O15056 1496 aa21.29■■□□□ 1
CHFR-208ENST00000511001 CLASP1Q7Z460 1538 aa21.28■■□□□ 1
CHFR-208ENST00000511001 CHMP7Q8WUX9 453 aaPredicted RBP21.26■□□□□ 0.99
CHFR-208ENST00000511001 CYB5RLQ6IPT4 315 aa21.22■□□□□ 0.99
CHFR-208ENST00000511001 ARAP1Q96P48 1450 aa21.21■□□□□ 0.99
CHFR-208ENST00000511001 ADAMTS12P58397 1594 aa21.19■□□□□ 0.98
CHFR-208ENST00000511001 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
CHFR-208ENST00000511001 GRIN2AQ12879 1464 aa21.13■□□□□ 0.97
CHFR-208ENST00000511001 TRHP20396 242 aaPredicted RBP21.12■□□□□ 0.97
CHFR-208ENST00000511001 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
CHFR-208ENST00000511001 CEP170Q5SW79 1584 aa21.08■□□□□ 0.97
CHFR-208ENST00000511001 NUP160Q12769 1436 aa21.07■□□□□ 0.96
CHFR-208ENST00000511001 ERCC6L2Q5T890 1561 aa20.98■□□□□ 0.95
CHFR-208ENST00000511001 SHROOM2Q13796 1616 aa20.98■□□□□ 0.95
CHFR-208ENST00000511001 KIF27Q86VH2 1401 aa20.95■□□□□ 0.94
CHFR-208ENST00000511001 IGF1RP08069 1367 aa20.93■□□□□ 0.94
CHFR-208ENST00000511001 CUL7Q14999 1698 aa20.9■□□□□ 0.94
CHFR-208ENST00000511001 RUSC2Q8N2Y8 1516 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms