RNA–Protein interactions for RNA: ENST00000510710.3

COL1A1-212, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 1,147 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-212ENST00000510710 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
COL1A1-212ENST00000510710 ABCC9O60706 1549 aa33.87■■■■□ 3.01
COL1A1-212ENST00000510710 CCDC180Q9P1Z9 1646 aa33.65■■■□□ 2.98
COL1A1-212ENST00000510710 RB1CC1Q8TDY2 1594 aa32.15■■■□□ 2.74
COL1A1-212ENST00000510710 DNAJC5BQ9UF47 199 aa31.93■■■□□ 2.7
COL1A1-212ENST00000510710 NACADO15069 1562 aa31.89■■■□□ 2.7
COL1A1-212ENST00000510710 DCAF8L2P0C7V8 631 aa31.84■■■□□ 2.69
COL1A1-212ENST00000510710 PABPN1Q86U42 306 aaKnown RBP eCLIP31.56■■■□□ 2.64
COL1A1-212ENST00000510710 UNC13AQ9UPW8 1703 aa31.38■■■□□ 2.61
COL1A1-212ENST00000510710 MYO15BQ96JP2 1530 aa31.36■■■□□ 2.61
COL1A1-212ENST00000510710 BICRAQ9NZM4 1560 aa31.18■■■□□ 2.58
COL1A1-212ENST00000510710 ZCCHC6Q5VYS8 1495 aaKnown RBP30.99■■■□□ 2.55
COL1A1-212ENST00000510710 DCAF1Q9Y4B6 1507 aa30.91■■■□□ 2.54
COL1A1-212ENST00000510710 SHROOM4Q9ULL8 1493 aa30.74■■■□□ 2.51
COL1A1-212ENST00000510710 SCRIBQ14160 1630 aa30.69■■■□□ 2.5
COL1A1-212ENST00000510710 CC2D2AQ9P2K1 1620 aa30.57■■■□□ 2.48
COL1A1-212ENST00000510710 CECR2Q9BXF3 1484 aa30.53■■■□□ 2.48
COL1A1-212ENST00000510710 EIF4G1Q04637 1599 aaKnown RBP30.45■■■□□ 2.47
COL1A1-212ENST00000510710 DNAJC5Q9H3Z4 198 aa29.45■■■□□ 2.31
COL1A1-212ENST00000510710 NCAPD3P42695 1498 aa29.44■■■□□ 2.3
COL1A1-212ENST00000510710 ATAD2BQ9ULI0 1458 aa29.34■■■□□ 2.29
COL1A1-212ENST00000510710 ERCC6Q03468 1493 aa29.28■■■□□ 2.28
COL1A1-212ENST00000510710 SMARCA4P51532 1647 aa29.24■■■□□ 2.27
COL1A1-212ENST00000510710 SMARCA2P51531 1590 aa29.24■■■□□ 2.27
COL1A1-212ENST00000510710 CUX2O14529 1486 aa29.23■■■□□ 2.27
COL1A1-212ENST00000510710 HMGXB3Q12766 1538 aa29.19■■■□□ 2.26
COL1A1-212ENST00000510710 BAZ1AQ9NRL2 1556 aaPredicted RBP29.09■■■□□ 2.25
COL1A1-212ENST00000510710 BAZ1BQ9UIG0 1483 aaKnown RBP29.05■■■□□ 2.24
COL1A1-212ENST00000510710 NESP48681 1621 aa29.04■■■□□ 2.24
COL1A1-212ENST00000510710 PEG3Q9GZU2 1588 aa28.94■■■□□ 2.22
COL1A1-212ENST00000510710 MROH2BQ7Z745 1585 aa28.87■■■□□ 2.21
COL1A1-212ENST00000510710 LAMC3Q9Y6N6 1575 aa28.79■■■□□ 2.2
COL1A1-212ENST00000510710 THOC2Q8NI27 1593 aaKnown RBP28.73■■■□□ 2.19
COL1A1-212ENST00000510710 PDS5BQ9NTI5 1447 aa28.68■■■□□ 2.18
COL1A1-212ENST00000510710 KIF21AQ7Z4S6 1674 aa28.64■■■□□ 2.17
COL1A1-212ENST00000510710 CADPSQ9ULU8 1353 aa28.57■■■□□ 2.16
COL1A1-212ENST00000510710 WIZO95785 1651 aa28.52■■■□□ 2.16
COL1A1-212ENST00000510710 MRC2Q9UBG0 1479 aa28.41■■■□□ 2.14
COL1A1-212ENST00000510710 WDR62O43379 1518 aa28.33■■■□□ 2.13
COL1A1-212ENST00000510710 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
COL1A1-212ENST00000510710 FANCD2Q9BXW9 1451 aa28.23■■■□□ 2.11
COL1A1-212ENST00000510710 RSF1Q96T23 1441 aaPredicted RBP28.22■■■□□ 2.11
COL1A1-212ENST00000510710 CFTRP13569 1480 aa28.19■■■□□ 2.1
COL1A1-212ENST00000510710 TRIM41Q8WV44 630 aa28.14■■■□□ 2.1
COL1A1-212ENST00000510710 TOP2AP11388 1531 aaKnown RBP28.13■■■□□ 2.09
COL1A1-212ENST00000510710 URB2Q14146 1524 aaKnown RBP27.99■■■□□ 2.07
COL1A1-212ENST00000510710 OSCARQ8IYS5 282 aa27.96■■■□□ 2.07
COL1A1-212ENST00000510710 PRDM2Q13029 1718 aa27.86■■■□□ 2.05
COL1A1-212ENST00000510710 CCDC88BA6NC98 1476 aa27.85■■■□□ 2.05
COL1A1-212ENST00000510710 IFT140Q96RY7 1462 aa27.71■■■□□ 2.03
COL1A1-212ENST00000510710 ZNF608Q9ULD9 1512 aaPredicted RBP27.68■■■□□ 2.02
COL1A1-212ENST00000510710 TOPBP1Q92547 1522 aa27.67■■■□□ 2.02
COL1A1-212ENST00000510710 ABCC8Q09428 1581 aa27.62■■■□□ 2.01
COL1A1-212ENST00000510710 DNMBPQ6XZF7 1577 aa27.54■■■□□ 2
COL1A1-212ENST00000510710 RIMBP3CA6NJZ7 1639 aa27.52■■■□□ 2
COL1A1-212ENST00000510710 RIMBP3BA6NNM3 1639 aa27.52■■■□□ 2
COL1A1-212ENST00000510710 RIMBP3Q9UFD9 1639 aa27.52■■■□□ 2
COL1A1-212ENST00000510710 EIF4G3O43432 1585 aaKnown RBP27.5■■□□□ 1.99
COL1A1-212ENST00000510710 AQRO60306 1485 aaKnown RBP eCLIP27.44■■□□□ 1.98
COL1A1-212ENST00000510710 ARHGEF11O15085 1522 aa27.43■■□□□ 1.98
COL1A1-212ENST00000510710 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
COL1A1-212ENST00000510710 POLA1P09884 1462 aaPredicted RBP27.38■■□□□ 1.97
COL1A1-212ENST00000510710 FBLN2P98095 1184 aa27.37■■□□□ 1.97
COL1A1-212ENST00000510710 CHD1O14646 1710 aa27.33■■□□□ 1.97
COL1A1-212ENST00000510710 CYB5RLQ6IPT4 315 aa27.32■■□□□ 1.96
COL1A1-212ENST00000510710 RAD54L2Q9Y4B4 1467 aa27.31■■□□□ 1.96
COL1A1-212ENST00000510710 SOGA1O94964 1423 aa27.29■■□□□ 1.96
COL1A1-212ENST00000510710 TDRD9Q8NDG6 1382 aaKnown RBP27.25■■□□□ 1.95
COL1A1-212ENST00000510710 FGD5Q6ZNL6 1462 aa27.19■■□□□ 1.94
COL1A1-212ENST00000510710 ARAP1Q96P48 1450 aa27.14■■□□□ 1.94
COL1A1-212ENST00000510710 SNAPC4Q5SXM2 1469 aa27.13■■□□□ 1.93
COL1A1-212ENST00000510710 CUX1P39880 1505 aa27.13■■□□□ 1.93
COL1A1-212ENST00000510710 CHMP7Q8WUX9 453 aaPredicted RBP27.12■■□□□ 1.93
COL1A1-212ENST00000510710 WDR97A6NE52 1622 aa27.12■■□□□ 1.93
COL1A1-212ENST00000510710 TRHP20396 242 aaPredicted RBP27.1■■□□□ 1.93
COL1A1-212ENST00000510710 GRIN2BQ13224 1484 aa27.05■■□□□ 1.92
COL1A1-212ENST00000510710 MAGI1Q96QZ7 1491 aaPredicted RBP27.05■■□□□ 1.92
COL1A1-212ENST00000510710 SYNJ1O43426 1573 aa27.01■■□□□ 1.91
COL1A1-212ENST00000510710 CLASP1Q7Z460 1538 aa27■■□□□ 1.91
COL1A1-212ENST00000510710 SYNJ2O15056 1496 aa26.97■■□□□ 1.91
COL1A1-212ENST00000510710 SUPT5HO00267 1087 aaKnown RBP26.96■■□□□ 1.91
COL1A1-212ENST00000510710 GAPVD1Q14C86 1478 aa26.94■■□□□ 1.9
COL1A1-212ENST00000510710 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
COL1A1-212ENST00000510710 ABCA10Q8WWZ4 1543 aa26.86■■□□□ 1.89
COL1A1-212ENST00000510710 ABCA5Q8WWZ7 1642 aa26.81■■□□□ 1.88
COL1A1-212ENST00000510710 WRNQ14191 1432 aaPredicted RBP eCLIP26.76■■□□□ 1.87
COL1A1-212ENST00000510710 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
COL1A1-212ENST00000510710 TOP2BQ02880 1626 aa26.65■■□□□ 1.86
COL1A1-212ENST00000510710 BIVM-ERCC5R4GMW8 1640 aa26.63■■□□□ 1.85
COL1A1-212ENST00000510710 ADAMTS12P58397 1594 aa26.62■■□□□ 1.85
COL1A1-212ENST00000510710 NUP160Q12769 1436 aa26.59■■□□□ 1.85
COL1A1-212ENST00000510710 CEP170Q5SW79 1584 aa26.58■■□□□ 1.85
COL1A1-212ENST00000510710 ERCC6L2Q5T890 1561 aa26.58■■□□□ 1.85
COL1A1-212ENST00000510710 FHAD1B1AJZ9 1412 aa26.58■■□□□ 1.85
COL1A1-212ENST00000510710 ERICH3Q5RHP9 1530 aa26.53■■□□□ 1.84
COL1A1-212ENST00000510710 SHROOM2Q13796 1616 aa26.47■■□□□ 1.83
COL1A1-212ENST00000510710 AEBP2Q6ZN18 517 aaPredicted RBP26.44■■□□□ 1.82
COL1A1-212ENST00000510710 JPH4Q96JJ6 628 aa26.4■■□□□ 1.82
COL1A1-212ENST00000510710 PRG4Q92954 1404 aaPredicted RBP26.39■■□□□ 1.82
COL1A1-212ENST00000510710 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms