RNA–Protein interactions for RNA: ENST00000510472.1

HMGXB3-203, Transcript of HMG-box containing 3, humanhuman

TSL 2

Gene HMGXB3, Length 580 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-203ENST00000510472 NISCHQ9Y2I1 1504 aa28.67■■■□□ 2.18
HMGXB3-203ENST00000510472 CCDC180Q9P1Z9 1646 aa25.37■■□□□ 1.65
HMGXB3-203ENST00000510472 ABCC9O60706 1549 aa24.95■■□□□ 1.58
HMGXB3-203ENST00000510472 DCAF8L2P0C7V8 631 aa23.95■■□□□ 1.42
HMGXB3-203ENST00000510472 NACADO15069 1562 aa23.95■■□□□ 1.42
HMGXB3-203ENST00000510472 RB1CC1Q8TDY2 1594 aa23.94■■□□□ 1.42
HMGXB3-203ENST00000510472 MYO15BQ96JP2 1530 aa23.87■■□□□ 1.41
HMGXB3-203ENST00000510472 ZCCHC6Q5VYS8 1495 aaKnown RBP23.86■■□□□ 1.41
HMGXB3-203ENST00000510472 DCAF1Q9Y4B6 1507 aa23.73■■□□□ 1.39
HMGXB3-203ENST00000510472 PABPN1Q86U42 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
HMGXB3-203ENST00000510472 UNC13AQ9UPW8 1703 aa23.29■■□□□ 1.32
HMGXB3-203ENST00000510472 BICRAQ9NZM4 1560 aa23.28■■□□□ 1.32
HMGXB3-203ENST00000510472 SCRIBQ14160 1630 aa23.15■■□□□ 1.3
HMGXB3-203ENST00000510472 DNAJC5BQ9UF47 199 aa23.09■■□□□ 1.29
HMGXB3-203ENST00000510472 SHROOM4Q9ULL8 1493 aa23.03■■□□□ 1.28
HMGXB3-203ENST00000510472 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
HMGXB3-203ENST00000510472 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
HMGXB3-203ENST00000510472 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
HMGXB3-203ENST00000510472 NCAPD3P42695 1498 aa22.19■■□□□ 1.14
HMGXB3-203ENST00000510472 SMARCA4P51532 1647 aa22.17■■□□□ 1.14
HMGXB3-203ENST00000510472 BAZ1AQ9NRL2 1556 aaPredicted RBP22.16■■□□□ 1.14
HMGXB3-203ENST00000510472 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
HMGXB3-203ENST00000510472 MROH2BQ7Z745 1585 aa22.09■■□□□ 1.13
HMGXB3-203ENST00000510472 SMARCA2P51531 1590 aa22.06■■□□□ 1.12
HMGXB3-203ENST00000510472 PEG3Q9GZU2 1588 aa22.02■■□□□ 1.12
HMGXB3-203ENST00000510472 HMGXB3Q12766 1538 aa21.98■■□□□ 1.11
HMGXB3-203ENST00000510472 BAZ1BQ9UIG0 1483 aaKnown RBP21.9■■□□□ 1.1
HMGXB3-203ENST00000510472 RSF1Q96T23 1441 aaPredicted RBP21.88■■□□□ 1.09
HMGXB3-203ENST00000510472 WIZO95785 1651 aa21.76■■□□□ 1.07
HMGXB3-203ENST00000510472 NESP48681 1621 aa21.6■■□□□ 1.05
HMGXB3-203ENST00000510472 TOP2AP11388 1531 aaKnown RBP21.56■■□□□ 1.04
HMGXB3-203ENST00000510472 CADPSQ9ULU8 1353 aa21.53■■□□□ 1.04
HMGXB3-203ENST00000510472 DNAJC5Q9H3Z4 198 aa21.53■■□□□ 1.04
HMGXB3-203ENST00000510472 LAMC3Q9Y6N6 1575 aa21.49■■□□□ 1.03
HMGXB3-203ENST00000510472 ERCC6Q03468 1493 aa21.46■■□□□ 1.03
HMGXB3-203ENST00000510472 PDS5BQ9NTI5 1447 aa21.41■■□□□ 1.02
HMGXB3-203ENST00000510472 CFTRP13569 1480 aa21.39■■□□□ 1.01
HMGXB3-203ENST00000510472 CCDC88BA6NC98 1476 aa21.38■■□□□ 1.01
HMGXB3-203ENST00000510472 CUX2O14529 1486 aa21.3■■□□□ 1
HMGXB3-203ENST00000510472 SUPT5HO00267 1087 aaKnown RBP21.24■□□□□ 0.99
HMGXB3-203ENST00000510472 FANCD2Q9BXW9 1451 aa21.22■□□□□ 0.99
HMGXB3-203ENST00000510472 THOC2Q8NI27 1593 aaKnown RBP21.21■□□□□ 0.99
HMGXB3-203ENST00000510472 KIF21AQ7Z4S6 1674 aa21.2■□□□□ 0.98
HMGXB3-203ENST00000510472 MRC2Q9UBG0 1479 aa21.16■□□□□ 0.98
HMGXB3-203ENST00000510472 CEP164Q9UPV0 1460 aa21.16■□□□□ 0.98
HMGXB3-203ENST00000510472 WDR62O43379 1518 aa21.09■□□□□ 0.97
HMGXB3-203ENST00000510472 URB2Q14146 1524 aaKnown RBP21.03■□□□□ 0.96
HMGXB3-203ENST00000510472 PRDM2Q13029 1718 aa20.95■□□□□ 0.94
HMGXB3-203ENST00000510472 ABCC8Q09428 1581 aa20.88■□□□□ 0.93
HMGXB3-203ENST00000510472 TOPBP1Q92547 1522 aa20.88■□□□□ 0.93
HMGXB3-203ENST00000510472 DNMBPQ6XZF7 1577 aa20.8■□□□□ 0.92
HMGXB3-203ENST00000510472 IFT140Q96RY7 1462 aa20.76■□□□□ 0.91
HMGXB3-203ENST00000510472 CUX1P39880 1505 aa20.71■□□□□ 0.91
HMGXB3-203ENST00000510472 POLA1P09884 1462 aaPredicted RBP20.7■□□□□ 0.9
HMGXB3-203ENST00000510472 ZNF608Q9ULD9 1512 aaPredicted RBP20.68■□□□□ 0.9
HMGXB3-203ENST00000510472 SOGA1O94964 1423 aa20.64■□□□□ 0.89
HMGXB3-203ENST00000510472 TARBP1Q13395 1621 aaKnown RBP20.63■□□□□ 0.89
HMGXB3-203ENST00000510472 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
HMGXB3-203ENST00000510472 RAD54L2Q9Y4B4 1467 aa20.62■□□□□ 0.89
HMGXB3-203ENST00000510472 WRNQ14191 1432 aaPredicted RBP eCLIP20.58■□□□□ 0.88
HMGXB3-203ENST00000510472 AQRO60306 1485 aaKnown RBP eCLIP20.57■□□□□ 0.888e-7■■■■□ 20.4
HMGXB3-203ENST00000510472 TDRD9Q8NDG6 1382 aaKnown RBP20.55■□□□□ 0.88
HMGXB3-203ENST00000510472 OSCARQ8IYS5 282 aa20.49■□□□□ 0.87
HMGXB3-203ENST00000510472 EIF4G3O43432 1585 aaKnown RBP20.49■□□□□ 0.87
HMGXB3-203ENST00000510472 TOP2BQ02880 1626 aa20.48■□□□□ 0.87
HMGXB3-203ENST00000510472 SYNJ1O43426 1573 aa20.47■□□□□ 0.87
HMGXB3-203ENST00000510472 ABCA10Q8WWZ4 1543 aa20.46■□□□□ 0.87
HMGXB3-203ENST00000510472 BIVM-ERCC5R4GMW8 1640 aa20.44■□□□□ 0.86
HMGXB3-203ENST00000510472 WDR97A6NE52 1622 aa20.43■□□□□ 0.86
HMGXB3-203ENST00000510472 TRIM41Q8WV44 630 aa20.4■□□□□ 0.86
HMGXB3-203ENST00000510472 GRIN2BQ13224 1484 aa20.38■□□□□ 0.85
HMGXB3-203ENST00000510472 GAPVD1Q14C86 1478 aa20.37■□□□□ 0.85
HMGXB3-203ENST00000510472 SNAPC4Q5SXM2 1469 aa20.33■□□□□ 0.85
HMGXB3-203ENST00000510472 MAGI1Q96QZ7 1491 aaPredicted RBP20.32■□□□□ 0.84
HMGXB3-203ENST00000510472 ABCA5Q8WWZ7 1642 aa20.31■□□□□ 0.84
HMGXB3-203ENST00000510472 FBLN2P98095 1184 aa20.3■□□□□ 0.84
HMGXB3-203ENST00000510472 CHMP7Q8WUX9 453 aaPredicted RBP20.27■□□□□ 0.84
HMGXB3-203ENST00000510472 SYNJ2O15056 1496 aa20.25■□□□□ 0.83
HMGXB3-203ENST00000510472 ERICH3Q5RHP9 1530 aa20.18■□□□□ 0.82
HMGXB3-203ENST00000510472 CHD1O14646 1710 aa20.18■□□□□ 0.82
HMGXB3-203ENST00000510472 PBRM1Q86U86 1689 aa20.17■□□□□ 0.82
HMGXB3-203ENST00000510472 FHAD1B1AJZ9 1412 aa20.17■□□□□ 0.82
HMGXB3-203ENST00000510472 IGF1RP08069 1367 aa20.16■□□□□ 0.82
HMGXB3-203ENST00000510472 KIF27Q86VH2 1401 aa20.14■□□□□ 0.81
HMGXB3-203ENST00000510472 ADAMTS12P58397 1594 aa20.11■□□□□ 0.81
HMGXB3-203ENST00000510472 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
HMGXB3-203ENST00000510472 CLASP1Q7Z460 1538 aa20.09■□□□□ 0.81
HMGXB3-203ENST00000510472 NUP160Q12769 1436 aa20.07■□□□□ 0.8
HMGXB3-203ENST00000510472 ARHGEF11O15085 1522 aa20.07■□□□□ 0.8
HMGXB3-203ENST00000510472 RIMBP3CA6NJZ7 1639 aa20.02■□□□□ 0.8
HMGXB3-203ENST00000510472 RIMBP3BA6NNM3 1639 aa20.02■□□□□ 0.8
HMGXB3-203ENST00000510472 RIMBP3Q9UFD9 1639 aa20.02■□□□□ 0.8
HMGXB3-203ENST00000510472 CARMIL1Q5VZK9 1371 aa19.99■□□□□ 0.79
HMGXB3-203ENST00000510472 CEP170Q5SW79 1584 aa19.98■□□□□ 0.79
HMGXB3-203ENST00000510472 RUSC2Q8N2Y8 1516 aa19.97■□□□□ 0.79
HMGXB3-203ENST00000510472 CYB5RLQ6IPT4 315 aa19.95■□□□□ 0.78
HMGXB3-203ENST00000510472 ARAP1Q96P48 1450 aa19.93■□□□□ 0.78
HMGXB3-203ENST00000510472 CUL7Q14999 1698 aa19.91■□□□□ 0.78
HMGXB3-203ENST00000510472 JPH4Q96JJ6 628 aa19.9■□□□□ 0.78
HMGXB3-203ENST00000510472 CHIC1Q5VXU3 224 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms