RNA–Protein interactions for RNA: ENST00000510331.1

LSM6-206, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-206ENST00000510331 NISCHQ9Y2I1 1504 aa45.91■■■■■ 4.94
LSM6-206ENST00000510331 CCDC180Q9P1Z9 1646 aa41.05■■■■■ 4.16
LSM6-206ENST00000510331 ABCC9O60706 1549 aa40.42■■■■■ 4.06
LSM6-206ENST00000510331 RB1CC1Q8TDY2 1594 aa38.73■■■■□ 3.79
LSM6-206ENST00000510331 NACADO15069 1562 aa38.57■■■■□ 3.77
LSM6-206ENST00000510331 DCAF8L2P0C7V8 631 aa38.32■■■■□ 3.72
LSM6-206ENST00000510331 ZCCHC6Q5VYS8 1495 aaKnown RBP38.23■■■■□ 3.71
LSM6-206ENST00000510331 MYO15BQ96JP2 1530 aa38.22■■■■□ 3.71
LSM6-206ENST00000510331 UNC13AQ9UPW8 1703 aa38■■■■□ 3.67
LSM6-206ENST00000510331 DCAF1Q9Y4B6 1507 aa37.95■■■■□ 3.67
LSM6-206ENST00000510331 BICRAQ9NZM4 1560 aa37.63■■■■□ 3.61
LSM6-206ENST00000510331 PABPN1Q86U42 306 aaKnown RBP eCLIP37.62■■■■□ 3.61
LSM6-206ENST00000510331 SCRIBQ14160 1630 aa37.47■■■■□ 3.59
LSM6-206ENST00000510331 DNAJC5BQ9UF47 199 aa37.29■■■■□ 3.56
LSM6-206ENST00000510331 SHROOM4Q9ULL8 1493 aa37.13■■■■□ 3.53
LSM6-206ENST00000510331 EIF4G1Q04637 1599 aaKnown RBP36.64■■■■□ 3.46
LSM6-206ENST00000510331 CC2D2AQ9P2K1 1620 aa36.58■■■■□ 3.45
LSM6-206ENST00000510331 CECR2Q9BXF3 1484 aa36.32■■■■□ 3.41
LSM6-206ENST00000510331 SMARCA4P51532 1647 aa35.76■■■■□ 3.32
LSM6-206ENST00000510331 BAZ1AQ9NRL2 1556 aaPredicted RBP35.62■■■■□ 3.29
LSM6-206ENST00000510331 ATAD2BQ9ULI0 1458 aa35.57■■■■□ 3.28
LSM6-206ENST00000510331 NCAPD3P42695 1498 aa35.55■■■■□ 3.28
LSM6-206ENST00000510331 SMARCA2P51531 1590 aa35.52■■■■□ 3.28
LSM6-206ENST00000510331 HMGXB3Q12766 1538 aa35.45■■■■□ 3.27
LSM6-206ENST00000510331 MROH2BQ7Z745 1585 aa35.42■■■■□ 3.26
LSM6-206ENST00000510331 PEG3Q9GZU2 1588 aa35.38■■■■□ 3.25
LSM6-206ENST00000510331 BAZ1BQ9UIG0 1483 aaKnown RBP35.29■■■■□ 3.24
LSM6-206ENST00000510331 WIZO95785 1651 aa35.06■■■■□ 3.2
LSM6-206ENST00000510331 NESP48681 1621 aa34.91■■■■□ 3.18
LSM6-206ENST00000510331 ERCC6Q03468 1493 aa34.84■■■■□ 3.17
LSM6-206ENST00000510331 RSF1Q96T23 1441 aaPredicted RBP34.83■■■■□ 3.17
LSM6-206ENST00000510331 LAMC3Q9Y6N6 1575 aa34.74■■■■□ 3.15
LSM6-206ENST00000510331 TOP2AP11388 1531 aaKnown RBP34.65■■■■□ 3.14
LSM6-206ENST00000510331 CUX2O14529 1486 aa34.58■■■■□ 3.13
LSM6-206ENST00000510331 KIF21AQ7Z4S6 1674 aa34.57■■■■□ 3.12
LSM6-206ENST00000510331 THOC2Q8NI27 1593 aaKnown RBP34.53■■■■□ 3.12
LSM6-206ENST00000510331 CADPSQ9ULU8 1353 aa34.48■■■■□ 3.11
LSM6-206ENST00000510331 PDS5BQ9NTI5 1447 aa34.42■■■■□ 3.1
LSM6-206ENST00000510331 CFTRP13569 1480 aa34.26■■■■□ 3.07
LSM6-206ENST00000510331 MRC2Q9UBG0 1479 aa34.19■■■■□ 3.06
LSM6-206ENST00000510331 CCDC88BA6NC98 1476 aa34.17■■■■□ 3.06
LSM6-206ENST00000510331 FANCD2Q9BXW9 1451 aa34.16■■■■□ 3.06
LSM6-206ENST00000510331 CEP164Q9UPV0 1460 aa34.16■■■■□ 3.06
LSM6-206ENST00000510331 PRDM2Q13029 1718 aa34.15■■■■□ 3.06
LSM6-206ENST00000510331 WDR62O43379 1518 aa34.13■■■■□ 3.05
LSM6-206ENST00000510331 URB2Q14146 1524 aaKnown RBP33.89■■■■□ 3.02
LSM6-206ENST00000510331 DNAJC5Q9H3Z4 198 aa33.76■■■□□ 2.99
LSM6-206ENST00000510331 SUPT5HO00267 1087 aaKnown RBP33.63■■■□□ 2.97
LSM6-206ENST00000510331 TOPBP1Q92547 1522 aa33.6■■■□□ 2.97
LSM6-206ENST00000510331 DNMBPQ6XZF7 1577 aa33.55■■■□□ 2.96
LSM6-206ENST00000510331 ABCC8Q09428 1581 aa33.47■■■□□ 2.95
LSM6-206ENST00000510331 IFT140Q96RY7 1462 aa33.43■■■□□ 2.94
LSM6-206ENST00000510331 ZNF608Q9ULD9 1512 aaPredicted RBP33.37■■■□□ 2.93
LSM6-206ENST00000510331 TARBP1Q13395 1621 aaKnown RBP33.3■■■□□ 2.92
LSM6-206ENST00000510331 POLA1P09884 1462 aaPredicted RBP33.3■■■□□ 2.92
LSM6-206ENST00000510331 EIF4G3O43432 1585 aaKnown RBP33.3■■■□□ 2.92
LSM6-206ENST00000510331 CUX1P39880 1505 aa33.26■■■□□ 2.91
LSM6-206ENST00000510331 FGD5Q6ZNL6 1462 aa33.18■■■□□ 2.9
LSM6-206ENST00000510331 RAD54L2Q9Y4B4 1467 aa33.15■■■□□ 2.9
LSM6-206ENST00000510331 AQRO60306 1485 aaKnown RBP eCLIP33.07■■■□□ 2.88
LSM6-206ENST00000510331 SOGA1O94964 1423 aa33.05■■■□□ 2.88
LSM6-206ENST00000510331 WDR97A6NE52 1622 aa33.03■■■□□ 2.88
LSM6-206ENST00000510331 CHD1O14646 1710 aa32.96■■■□□ 2.87
LSM6-206ENST00000510331 TDRD9Q8NDG6 1382 aaKnown RBP32.94■■■□□ 2.86
LSM6-206ENST00000510331 OSCARQ8IYS5 282 aa32.93■■■□□ 2.86
LSM6-206ENST00000510331 BIVM-ERCC5R4GMW8 1640 aa32.92■■■□□ 2.86
LSM6-206ENST00000510331 SYNJ1O43426 1573 aa32.91■■■□□ 2.86
LSM6-206ENST00000510331 TOP2BQ02880 1626 aa32.88■■■□□ 2.85
LSM6-206ENST00000510331 WRNQ14191 1432 aaPredicted RBP eCLIP32.85■■■□□ 2.85
LSM6-206ENST00000510331 SNAPC4Q5SXM2 1469 aa32.83■■■□□ 2.85
LSM6-206ENST00000510331 PBRM1Q86U86 1689 aa32.82■■■□□ 2.84
LSM6-206ENST00000510331 ABCA10Q8WWZ4 1543 aa32.81■■■□□ 2.84
LSM6-206ENST00000510331 ABCA5Q8WWZ7 1642 aa32.8■■■□□ 2.84
LSM6-206ENST00000510331 GRIN2BQ13224 1484 aa32.76■■■□□ 2.84
LSM6-206ENST00000510331 MAGI1Q96QZ7 1491 aaPredicted RBP32.73■■■□□ 2.83
LSM6-206ENST00000510331 GAPVD1Q14C86 1478 aa32.72■■■□□ 2.83
LSM6-206ENST00000510331 RIMBP3CA6NJZ7 1639 aa32.68■■■□□ 2.82
LSM6-206ENST00000510331 RIMBP3BA6NNM3 1639 aa32.68■■■□□ 2.82
LSM6-206ENST00000510331 RIMBP3Q9UFD9 1639 aa32.68■■■□□ 2.82
LSM6-206ENST00000510331 FBLN2P98095 1184 aa32.65■■■□□ 2.82
LSM6-206ENST00000510331 ARHGEF11O15085 1522 aa32.61■■■□□ 2.81
LSM6-206ENST00000510331 SYNJ2O15056 1496 aa32.61■■■□□ 2.81
LSM6-206ENST00000510331 TRIM41Q8WV44 630 aa32.58■■■□□ 2.81
LSM6-206ENST00000510331 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
LSM6-206ENST00000510331 ADAMTS12P58397 1594 aa32.53■■■□□ 2.8
LSM6-206ENST00000510331 CHMP7Q8WUX9 453 aaPredicted RBP32.49■■■□□ 2.79
LSM6-206ENST00000510331 ERICH3Q5RHP9 1530 aa32.41■■■□□ 2.78
LSM6-206ENST00000510331 GRIN2AQ12879 1464 aa32.38■■■□□ 2.77
LSM6-206ENST00000510331 ARAP1Q96P48 1450 aa32.33■■■□□ 2.77
LSM6-206ENST00000510331 FHAD1B1AJZ9 1412 aa32.31■■■□□ 2.76
LSM6-206ENST00000510331 CEP170Q5SW79 1584 aa32.3■■■□□ 2.76
LSM6-206ENST00000510331 NUP160Q12769 1436 aa32.23■■■□□ 2.75
LSM6-206ENST00000510331 KIF27Q86VH2 1401 aa32.16■■■□□ 2.74
LSM6-206ENST00000510331 CYB5RLQ6IPT4 315 aa32.15■■■□□ 2.74
LSM6-206ENST00000510331 CUL7Q14999 1698 aa32.11■■■□□ 2.73
LSM6-206ENST00000510331 SHROOM2Q13796 1616 aa32.1■■■□□ 2.73
LSM6-206ENST00000510331 ERCC6L2Q5T890 1561 aa32.08■■■□□ 2.73
LSM6-206ENST00000510331 RUSC2Q8N2Y8 1516 aa32.07■■■□□ 2.72
LSM6-206ENST00000510331 IGF1RP08069 1367 aa32.03■■■□□ 2.72
LSM6-206ENST00000510331 PRG4Q92954 1404 aaPredicted RBP31.83■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms