RNA–Protein interactions for RNA: ENST00000509637.6

RAB40C-202, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 565 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-202ENST00000509637 NISCHQ9Y2I1 1504 aa40.39■■■■■ 4.06
RAB40C-202ENST00000509637 ABCC9O60706 1549 aa36.44■■■■□ 3.42
RAB40C-202ENST00000509637 CCDC180Q9P1Z9 1646 aa36.15■■■■□ 3.38
RAB40C-202ENST00000509637 DNAJC5BQ9UF47 199 aa34.52■■■■□ 3.12
RAB40C-202ENST00000509637 RB1CC1Q8TDY2 1594 aa34.48■■■■□ 3.11
RAB40C-202ENST00000509637 NACADO15069 1562 aa34.23■■■■□ 3.07
RAB40C-202ENST00000509637 DCAF8L2P0C7V8 631 aa34.14■■■■□ 3.06
RAB40C-202ENST00000509637 PABPN1Q86U42 306 aaKnown RBP eCLIP33.99■■■■□ 3.03
RAB40C-202ENST00000509637 UNC13AQ9UPW8 1703 aa33.84■■■■□ 3.01
RAB40C-202ENST00000509637 MYO15BQ96JP2 1530 aa33.73■■■□□ 2.99
RAB40C-202ENST00000509637 BICRAQ9NZM4 1560 aa33.69■■■□□ 2.98
RAB40C-202ENST00000509637 ZCCHC6Q5VYS8 1495 aaKnown RBP33.44■■■□□ 2.94
RAB40C-202ENST00000509637 DCAF1Q9Y4B6 1507 aa33.28■■■□□ 2.92
RAB40C-202ENST00000509637 SCRIBQ14160 1630 aa33.05■■■□□ 2.88
RAB40C-202ENST00000509637 SHROOM4Q9ULL8 1493 aa32.93■■■□□ 2.86
RAB40C-202ENST00000509637 CC2D2AQ9P2K1 1620 aa32.88■■■□□ 2.85
RAB40C-202ENST00000509637 CECR2Q9BXF3 1484 aa32.78■■■□□ 2.84
RAB40C-202ENST00000509637 EIF4G1Q04637 1599 aaKnown RBP32.76■■■□□ 2.84
RAB40C-202ENST00000509637 NCAPD3P42695 1498 aa31.71■■■□□ 2.67
RAB40C-202ENST00000509637 ATAD2BQ9ULI0 1458 aa31.61■■■□□ 2.65
RAB40C-202ENST00000509637 DNAJC5Q9H3Z4 198 aa31.59■■■□□ 2.65
RAB40C-202ENST00000509637 SMARCA4P51532 1647 aa31.5■■■□□ 2.63
RAB40C-202ENST00000509637 SMARCA2P51531 1590 aa31.38■■■□□ 2.61
RAB40C-202ENST00000509637 HMGXB3Q12766 1538 aa31.37■■■□□ 2.61
RAB40C-202ENST00000509637 NESP48681 1621 aa31.35■■■□□ 2.61
RAB40C-202ENST00000509637 CUX2O14529 1486 aa31.32■■■□□ 2.6
RAB40C-202ENST00000509637 ERCC6Q03468 1493 aa31.32■■■□□ 2.6
RAB40C-202ENST00000509637 BAZ1AQ9NRL2 1556 aaPredicted RBP31.26■■■□□ 2.59
RAB40C-202ENST00000509637 MROH2BQ7Z745 1585 aa31.2■■■□□ 2.58
RAB40C-202ENST00000509637 BAZ1BQ9UIG0 1483 aaKnown RBP31.2■■■□□ 2.58
RAB40C-202ENST00000509637 PEG3Q9GZU2 1588 aa31.18■■■□□ 2.58
RAB40C-202ENST00000509637 THOC2Q8NI27 1593 aaKnown RBP30.94■■■□□ 2.54
RAB40C-202ENST00000509637 LAMC3Q9Y6N6 1575 aa30.9■■■□□ 2.54
RAB40C-202ENST00000509637 KIF21AQ7Z4S6 1674 aa30.82■■■□□ 2.52
RAB40C-202ENST00000509637 WIZO95785 1651 aa30.79■■■□□ 2.52
RAB40C-202ENST00000509637 CADPSQ9ULU8 1353 aa30.72■■■□□ 2.51
RAB40C-202ENST00000509637 PDS5BQ9NTI5 1447 aa30.72■■■□□ 2.51
RAB40C-202ENST00000509637 MRC2Q9UBG0 1479 aa30.51■■■□□ 2.48
RAB40C-202ENST00000509637 RSF1Q96T23 1441 aaPredicted RBP30.5■■■□□ 2.47
RAB40C-202ENST00000509637 WDR62O43379 1518 aa30.46■■■□□ 2.47
RAB40C-202ENST00000509637 CFTRP13569 1480 aa30.36■■■□□ 2.45
RAB40C-202ENST00000509637 FANCD2Q9BXW9 1451 aa30.36■■■□□ 2.45
RAB40C-202ENST00000509637 CEP164Q9UPV0 1460 aa30.34■■■□□ 2.45
RAB40C-202ENST00000509637 TOP2AP11388 1531 aaKnown RBP30.29■■■□□ 2.44
RAB40C-202ENST00000509637 URB2Q14146 1524 aaKnown RBP30.2■■■□□ 2.42
RAB40C-202ENST00000509637 TRIM41Q8WV44 630 aa30.11■■■□□ 2.41
RAB40C-202ENST00000509637 CCDC88BA6NC98 1476 aa30.06■■■□□ 2.4
RAB40C-202ENST00000509637 OSCARQ8IYS5 282 aa29.93■■■□□ 2.38
RAB40C-202ENST00000509637 PRDM2Q13029 1718 aa29.91■■■□□ 2.38
RAB40C-202ENST00000509637 ZNF608Q9ULD9 1512 aaPredicted RBP29.87■■■□□ 2.37
RAB40C-202ENST00000509637 TOPBP1Q92547 1522 aa29.8■■■□□ 2.36
RAB40C-202ENST00000509637 IFT140Q96RY7 1462 aa29.74■■■□□ 2.35
RAB40C-202ENST00000509637 DNMBPQ6XZF7 1577 aa29.61■■■□□ 2.33
RAB40C-202ENST00000509637 RIMBP3CA6NJZ7 1639 aa29.59■■■□□ 2.33
RAB40C-202ENST00000509637 RIMBP3BA6NNM3 1639 aa29.59■■■□□ 2.33
RAB40C-202ENST00000509637 RIMBP3Q9UFD9 1639 aa29.59■■■□□ 2.33
RAB40C-202ENST00000509637 ABCC8Q09428 1581 aa29.57■■■□□ 2.32
RAB40C-202ENST00000509637 AQRO60306 1485 aaKnown RBP eCLIP29.57■■■□□ 2.322e-6■■■■■ 26.9
RAB40C-202ENST00000509637 TARBP1Q13395 1621 aaKnown RBP29.56■■■□□ 2.32
RAB40C-202ENST00000509637 EIF4G3O43432 1585 aaKnown RBP29.56■■■□□ 2.32
RAB40C-202ENST00000509637 POLA1P09884 1462 aaPredicted RBP29.49■■■□□ 2.31
RAB40C-202ENST00000509637 ARHGEF11O15085 1522 aa29.47■■■□□ 2.31
RAB40C-202ENST00000509637 RAD54L2Q9Y4B4 1467 aa29.46■■■□□ 2.31
RAB40C-202ENST00000509637 CHD1O14646 1710 aa29.39■■■□□ 2.3
RAB40C-202ENST00000509637 TDRD9Q8NDG6 1382 aaKnown RBP29.37■■■□□ 2.29
RAB40C-202ENST00000509637 SOGA1O94964 1423 aa29.34■■■□□ 2.29
RAB40C-202ENST00000509637 FBLN2P98095 1184 aa29.3■■■□□ 2.28
RAB40C-202ENST00000509637 CYB5RLQ6IPT4 315 aa29.3■■■□□ 2.28
RAB40C-202ENST00000509637 CUX1P39880 1505 aa29.3■■■□□ 2.28
RAB40C-202ENST00000509637 FGD5Q6ZNL6 1462 aa29.28■■■□□ 2.28
RAB40C-202ENST00000509637 ARAP1Q96P48 1450 aa29.23■■■□□ 2.27
RAB40C-202ENST00000509637 SNAPC4Q5SXM2 1469 aa29.18■■■□□ 2.26
RAB40C-202ENST00000509637 CLASP1Q7Z460 1538 aa29.09■■■□□ 2.25
RAB40C-202ENST00000509637 WDR97A6NE52 1622 aa29.05■■■□□ 2.24
RAB40C-202ENST00000509637 SUPT5HO00267 1087 aaKnown RBP29.05■■■□□ 2.24
RAB40C-202ENST00000509637 GRIN2BQ13224 1484 aa29.04■■■□□ 2.24
RAB40C-202ENST00000509637 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
RAB40C-202ENST00000509637 MAGI1Q96QZ7 1491 aaPredicted RBP29.03■■■□□ 2.24
RAB40C-202ENST00000509637 SYNJ2O15056 1496 aa28.96■■■□□ 2.23
RAB40C-202ENST00000509637 GAPVD1Q14C86 1478 aa28.96■■■□□ 2.23
RAB40C-202ENST00000509637 TRHP20396 242 aaPredicted RBP28.92■■■□□ 2.22
RAB40C-202ENST00000509637 ABCA10Q8WWZ4 1543 aa28.92■■■□□ 2.22
RAB40C-202ENST00000509637 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
RAB40C-202ENST00000509637 PBRM1Q86U86 1689 aa28.91■■■□□ 2.22
RAB40C-202ENST00000509637 ABCA5Q8WWZ7 1642 aa28.89■■■□□ 2.22
RAB40C-202ENST00000509637 ERCC6L2Q5T890 1561 aa28.75■■■□□ 2.19
RAB40C-202ENST00000509637 WRNQ14191 1432 aaPredicted RBP eCLIP28.73■■■□□ 2.19
RAB40C-202ENST00000509637 GRIN2AQ12879 1464 aa28.7■■■□□ 2.18
RAB40C-202ENST00000509637 TOP2BQ02880 1626 aa28.69■■■□□ 2.18
RAB40C-202ENST00000509637 BIVM-ERCC5R4GMW8 1640 aa28.69■■■□□ 2.18
RAB40C-202ENST00000509637 ADAMTS12P58397 1594 aa28.66■■■□□ 2.18
RAB40C-202ENST00000509637 CEP170Q5SW79 1584 aa28.66■■■□□ 2.18
RAB40C-202ENST00000509637 NUP160Q12769 1436 aa28.65■■■□□ 2.18
RAB40C-202ENST00000509637 FHAD1B1AJZ9 1412 aa28.57■■■□□ 2.16
RAB40C-202ENST00000509637 SHROOM2Q13796 1616 aa28.51■■■□□ 2.15
RAB40C-202ENST00000509637 ERICH3Q5RHP9 1530 aa28.5■■■□□ 2.15
RAB40C-202ENST00000509637 JPH4Q96JJ6 628 aa28.37■■■□□ 2.13
RAB40C-202ENST00000509637 PRG4Q92954 1404 aaPredicted RBP28.36■■■□□ 2.13
RAB40C-202ENST00000509637 IGF1RP08069 1367 aa28.26■■■□□ 2.12
RAB40C-202ENST00000509637 RUSC2Q8N2Y8 1516 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms