RNA–Protein interactions for RNA: ENST00000509469.5

PACRGL-221, Transcript of parkin coregulated like, human

TSL 4

Gene PACRGL, Length 580 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PACRGL-221	ENST00000509469	NISCH	Q9Y2I1	1504 aa		54.74	■■■■■ 6.35
PACRGL-221	ENST00000509469	CCDC180	Q9P1Z9	1646 aa		48.95	■■■■■ 5.43
PACRGL-221	ENST00000509469	ABCC9	O60706	1549 aa		48.54	■■■■■ 5.36
PACRGL-221	ENST00000509469	RB1CC1	Q8TDY2	1594 aa		46.36	■■■■■ 5.01
PACRGL-221	ENST00000509469	NACAD	O15069	1562 aa		46.13	■■■■■ 4.98
PACRGL-221	ENST00000509469	DCAF8L2	P0C7V8	631 aa		46.03	■■■■■ 4.96
PACRGL-221	ENST00000509469	MYO15B	Q96JP2	1530 aa		45.61	■■■■■ 4.89
PACRGL-221	ENST00000509469	ZCCHC6	Q5VYS8	1495 aa	Known RBP	45.47	■■■■■ 4.87
PACRGL-221	ENST00000509469	UNC13A	Q9UPW8	1703 aa		45.41	■■■■■ 4.86
PACRGL-221	ENST00000509469	PABPN1	Q86U42	306 aa	Known RBP eCLIP	45.25	■■■■■ 4.83
PACRGL-221	ENST00000509469	DCAF1	Q9Y4B6	1507 aa		45.21	■■■■■ 4.83
PACRGL-221	ENST00000509469	DNAJC5B	Q9UF47	199 aa		45.13	■■■■■ 4.82
PACRGL-221	ENST00000509469	BICRA	Q9NZM4	1560 aa		45.03	■■■■■ 4.8
PACRGL-221	ENST00000509469	SCRIB	Q14160	1630 aa		44.68	■■■■■ 4.74
PACRGL-221	ENST00000509469	SHROOM4	Q9ULL8	1493 aa		44.38	■■■■■ 4.69
PACRGL-221	ENST00000509469	EIF4G1	Q04637	1599 aa	Known RBP	43.88	■■■■■ 4.61
PACRGL-221	ENST00000509469	CC2D2A	Q9P2K1	1620 aa		43.87	■■■■■ 4.61
PACRGL-221	ENST00000509469	CECR2	Q9BXF3	1484 aa		43.65	■■■■■ 4.58
PACRGL-221	ENST00000509469	SMARCA4	P51532	1647 aa		42.64	■■■■■ 4.42
PACRGL-221	ENST00000509469	NCAPD3	P42695	1498 aa		42.57	■■■■■ 4.41
PACRGL-221	ENST00000509469	ATAD2B	Q9ULI0	1458 aa		42.53	■■■■■ 4.4
PACRGL-221	ENST00000509469	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	42.46	■■■■■ 4.39
PACRGL-221	ENST00000509469	SMARCA2	P51531	1590 aa		42.44	■■■■■ 4.38
PACRGL-221	ENST00000509469	HMGXB3	Q12766	1538 aa		42.33	■■■■■ 4.37
PACRGL-221	ENST00000509469	MROH2B	Q7Z745	1585 aa		42.22	■■■■■ 4.35
PACRGL-221	ENST00000509469	PEG3	Q9GZU2	1588 aa		42.18	■■■■■ 4.34
PACRGL-221	ENST00000509469	BAZ1B	Q9UIG0	1483 aa	Known RBP	42.16	■■■■■ 4.34
PACRGL-221	ENST00000509469	ERCC6	Q03468	1493 aa		41.85	■■■■■ 4.29
PACRGL-221	ENST00000509469	NES	P48681	1621 aa		41.84	■■■■■ 4.29
PACRGL-221	ENST00000509469	WIZ	O95785	1651 aa		41.76	■■■■■ 4.28
PACRGL-221	ENST00000509469	CUX2	O14529	1486 aa		41.6	■■■■■ 4.25
PACRGL-221	ENST00000509469	LAMC3	Q9Y6N6	1575 aa		41.57	■■■■■ 4.25
PACRGL-221	ENST00000509469	RSF1	Q96T23	1441 aa	Predicted RBP	41.47	■■■■■ 4.23
PACRGL-221	ENST00000509469	KIF21A	Q7Z4S6	1674 aa		41.35	■■■■■ 4.21
PACRGL-221	ENST00000509469	THOC2	Q8NI27	1593 aa	Known RBP	41.33	■■■■■ 4.21
PACRGL-221	ENST00000509469	CADPS	Q9ULU8	1353 aa		41.3	■■■■■ 4.2
PACRGL-221	ENST00000509469	PDS5B	Q9NTI5	1447 aa		41.28	■■■■■ 4.2
PACRGL-221	ENST00000509469	TOP2A	P11388	1531 aa	Known RBP	41.23	■■■■■ 4.19
PACRGL-221	ENST00000509469	DNAJC5	Q9H3Z4	198 aa		41.06	■■■■■ 4.16
PACRGL-221	ENST00000509469	CFTR	P13569	1480 aa		40.94	■■■■■ 4.14
PACRGL-221	ENST00000509469	MRC2	Q9UBG0	1479 aa		40.94	■■■■■ 4.14
PACRGL-221	ENST00000509469	CEP164	Q9UPV0	1460 aa		40.87	■■■■■ 4.13
PACRGL-221	ENST00000509469	FANCD2	Q9BXW9	1451 aa		40.86	■■■■■ 4.13
PACRGL-221	ENST00000509469	WDR62	O43379	1518 aa		40.83	■■■■■ 4.13
PACRGL-221	ENST00000509469	CCDC88B	A6NC98	1476 aa		40.75	■■■■■ 4.11
PACRGL-221	ENST00000509469	PRDM2	Q13029	1718 aa		40.64	■■■■■ 4.1
PACRGL-221	ENST00000509469	URB2	Q14146	1524 aa	Known RBP	40.52	■■■■■ 4.08
PACRGL-221	ENST00000509469	TOPBP1	Q92547	1522 aa		40.16	■■■■■ 4.02
PACRGL-221	ENST00000509469	DNMBP	Q6XZF7	1577 aa		40.05	■■■■■ 4
PACRGL-221	ENST00000509469	ABCC8	Q09428	1581 aa		40.04	■■■■■ 4
PACRGL-221	ENST00000509469	IFT140	Q96RY7	1462 aa		40.01	■■■■■ 4
PACRGL-221	ENST00000509469	SUPT5H	O00267	1087 aa	Known RBP	40	■■■■□ 3.99
PACRGL-221	ENST00000509469	ZNF608	Q9ULD9	1512 aa	Predicted RBP	39.96	■■■■□ 3.99
PACRGL-221	ENST00000509469	EIF4G3	O43432	1585 aa	Known RBP	39.78	■■■■□ 3.96
PACRGL-221	ENST00000509469	TARBP1	Q13395	1621 aa	Known RBP	39.78	■■■■□ 3.96
PACRGL-221	ENST00000509469	POLA1	P09884	1462 aa	Predicted RBP	39.77	■■■■□ 3.96
PACRGL-221	ENST00000509469	OSCAR	Q8IYS5	282 aa		39.75	■■■■□ 3.95
PACRGL-221	ENST00000509469	AQR	O60306	1485 aa	Known RBP eCLIP	39.64	■■■■□ 3.94
PACRGL-221	ENST00000509469	CUX1	P39880	1505 aa		39.64	■■■■□ 3.94
PACRGL-221	ENST00000509469	RAD54L2	Q9Y4B4	1467 aa		39.63	■■■■□ 3.94
PACRGL-221	ENST00000509469	FGD5	Q6ZNL6	1462 aa		39.6	■■■■□ 3.93
PACRGL-221	ENST00000509469	SOGA1	O94964	1423 aa		39.57	■■■■□ 3.93
PACRGL-221	ENST00000509469	TRIM41	Q8WV44	630 aa		39.51	■■■■□ 3.92
PACRGL-221	ENST00000509469	TDRD9	Q8NDG6	1382 aa	Known RBP	39.46	■■■■□ 3.91
PACRGL-221	ENST00000509469	CHD1	O14646	1710 aa		39.43	■■■■□ 3.9
PACRGL-221	ENST00000509469	WDR97	A6NE52	1622 aa		39.35	■■■■□ 3.89
PACRGL-221	ENST00000509469	FBLN2	P98095	1184 aa		39.28	■■■■□ 3.88
PACRGL-221	ENST00000509469	RIMBP3C	A6NJZ7	1639 aa		39.28	■■■■□ 3.88
PACRGL-221	ENST00000509469	RIMBP3B	A6NNM3	1639 aa		39.28	■■■■□ 3.88
PACRGL-221	ENST00000509469	RIMBP3	Q9UFD9	1639 aa		39.28	■■■■□ 3.88
PACRGL-221	ENST00000509469	SNAPC4	Q5SXM2	1469 aa		39.25	■■■■□ 3.87
PACRGL-221	ENST00000509469	GRIN2B	Q13224	1484 aa		39.17	■■■■□ 3.86
PACRGL-221	ENST00000509469	ARHGEF11	O15085	1522 aa		39.17	■■■■□ 3.86
PACRGL-221	ENST00000509469	ABCA10	Q8WWZ4	1543 aa		39.14	■■■■□ 3.86
PACRGL-221	ENST00000509469	MAGI1	Q96QZ7	1491 aa	Predicted RBP	39.14	■■■■□ 3.86
PACRGL-221	ENST00000509469	PBRM1	Q86U86	1689 aa		39.13	■■■■□ 3.86
PACRGL-221	ENST00000509469	BIVM-ERCC5	R4GMW8	1640 aa		39.12	■■■■□ 3.85
PACRGL-221	ENST00000509469	WRN	Q14191	1432 aa	Predicted RBP eCLIP	39.12	■■■■□ 3.85
PACRGL-221	ENST00000509469	TOP2B	Q02880	1626 aa		39.11	■■■■□ 3.85
PACRGL-221	ENST00000509469	SYNJ1	O43426	1573 aa		39.11	■■■■□ 3.85
PACRGL-221	ENST00000509469	GAPVD1	Q14C86	1478 aa		39.11	■■■■□ 3.85
PACRGL-221	ENST00000509469	ABCA5	Q8WWZ7	1642 aa		39.08	■■■■□ 3.85
PACRGL-221	ENST00000509469	CHMP7	Q8WUX9	453 aa	Predicted RBP	39.04	■■■■□ 3.84
PACRGL-221	ENST00000509469	SYNJ2	O15056	1496 aa		39	■■■■□ 3.83
PACRGL-221	ENST00000509469	CLASP1	Q7Z460	1538 aa		38.94	■■■■□ 3.82
PACRGL-221	ENST00000509469	CYB5RL	Q6IPT4	315 aa		38.83	■■■■□ 3.81
PACRGL-221	ENST00000509469	ARAP1	Q96P48	1450 aa		38.83	■■■■□ 3.81
PACRGL-221	ENST00000509469	ADAMTS12	P58397	1594 aa		38.76	■■■■□ 3.8
PACRGL-221	ENST00000509469	GRIN2A	Q12879	1464 aa		38.7	■■■■□ 3.79
PACRGL-221	ENST00000509469	ERICH3	Q5RHP9	1530 aa		38.66	■■■■□ 3.78
PACRGL-221	ENST00000509469	FHAD1	B1AJZ9	1412 aa		38.62	■■■■□ 3.77
PACRGL-221	ENST00000509469	CEP170	Q5SW79	1584 aa		38.57	■■■■□ 3.77
PACRGL-221	ENST00000509469	NUP160	Q12769	1436 aa		38.53	■■■■□ 3.76
PACRGL-221	ENST00000509469	ERCC6L2	Q5T890	1561 aa		38.4	■■■■□ 3.74
PACRGL-221	ENST00000509469	SHROOM2	Q13796	1616 aa		38.35	■■■■□ 3.73
PACRGL-221	ENST00000509469	KIF27	Q86VH2	1401 aa		38.32	■■■■□ 3.73
PACRGL-221	ENST00000509469	TRH	P20396	242 aa	Predicted RBP	38.27	■■■■□ 3.72
PACRGL-221	ENST00000509469	IGF1R	P08069	1367 aa		38.26	■■■■□ 3.72
PACRGL-221	ENST00000509469	CUL7	Q14999	1698 aa		38.21	■■■■□ 3.71
PACRGL-221	ENST00000509469	RUSC2	Q8N2Y8	1516 aa		38.21	■■■■□ 3.71

Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms