RNA–Protein interactions for RNA: ENST00000509389.5

HMGCL-208, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 1 (best)

Gene HMGCL, Length 1,379 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-208ENST00000509389 NISCHQ9Y2I1 1504 aa36.37■■■■□ 3.41
HMGCL-208ENST00000509389 CCDC180Q9P1Z9 1646 aa32.6■■■□□ 2.81
HMGCL-208ENST00000509389 ABCC9O60706 1549 aa32.55■■■□□ 2.8
HMGCL-208ENST00000509389 RB1CC1Q8TDY2 1594 aa31■■■□□ 2.55
HMGCL-208ENST00000509389 NACADO15069 1562 aa30.81■■■□□ 2.52
HMGCL-208ENST00000509389 DCAF8L2P0C7V8 631 aa30.66■■■□□ 2.5
HMGCL-208ENST00000509389 DNAJC5BQ9UF47 199 aa30.51■■■□□ 2.47
HMGCL-208ENST00000509389 MYO15BQ96JP2 1530 aa30.4■■■□□ 2.46
HMGCL-208ENST00000509389 UNC13AQ9UPW8 1703 aa30.34■■■□□ 2.45
HMGCL-208ENST00000509389 PABPN1Q86U42 306 aaKnown RBP eCLIP30.32■■■□□ 2.44
HMGCL-208ENST00000509389 ZCCHC6Q5VYS8 1495 aaKnown RBP30.15■■■□□ 2.42
HMGCL-208ENST00000509389 BICRAQ9NZM4 1560 aa30.12■■■□□ 2.41
HMGCL-208ENST00000509389 DCAF1Q9Y4B6 1507 aa30.03■■■□□ 2.4
HMGCL-208ENST00000509389 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
HMGCL-208ENST00000509389 SHROOM4Q9ULL8 1493 aa29.68■■■□□ 2.34
HMGCL-208ENST00000509389 CC2D2AQ9P2K1 1620 aa29.41■■■□□ 2.3
HMGCL-208ENST00000509389 EIF4G1Q04637 1599 aaKnown RBP29.36■■■□□ 2.29
HMGCL-208ENST00000509389 CECR2Q9BXF3 1484 aa29.31■■■□□ 2.28
HMGCL-208ENST00000509389 NCAPD3P42695 1498 aa28.44■■■□□ 2.14
HMGCL-208ENST00000509389 ATAD2BQ9ULI0 1458 aa28.37■■■□□ 2.13
HMGCL-208ENST00000509389 SMARCA4P51532 1647 aa28.35■■■□□ 2.13
HMGCL-208ENST00000509389 SMARCA2P51531 1590 aa28.28■■■□□ 2.12
HMGCL-208ENST00000509389 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
HMGCL-208ENST00000509389 BAZ1AQ9NRL2 1556 aaPredicted RBP28.22■■■□□ 2.11
HMGCL-208ENST00000509389 ERCC6Q03468 1493 aa28.09■■■□□ 2.09
HMGCL-208ENST00000509389 BAZ1BQ9UIG0 1483 aaKnown RBP28.09■■■□□ 2.09
HMGCL-208ENST00000509389 PEG3Q9GZU2 1588 aa28.08■■■□□ 2.09
HMGCL-208ENST00000509389 MROH2BQ7Z745 1585 aa28.03■■■□□ 2.08
HMGCL-208ENST00000509389 CUX2O14529 1486 aa28.01■■■□□ 2.08
HMGCL-208ENST00000509389 NESP48681 1621 aa27.99■■■□□ 2.07
HMGCL-208ENST00000509389 DNAJC5Q9H3Z4 198 aa27.95■■■□□ 2.06
HMGCL-208ENST00000509389 LAMC3Q9Y6N6 1575 aa27.79■■■□□ 2.04
HMGCL-208ENST00000509389 WIZO95785 1651 aa27.7■■■□□ 2.03
HMGCL-208ENST00000509389 THOC2Q8NI27 1593 aaKnown RBP27.68■■■□□ 2.02
HMGCL-208ENST00000509389 KIF21AQ7Z4S6 1674 aa27.63■■■□□ 2.01
HMGCL-208ENST00000509389 PDS5BQ9NTI5 1447 aa27.62■■■□□ 2.01
HMGCL-208ENST00000509389 CADPSQ9ULU8 1353 aa27.57■■■□□ 2
HMGCL-208ENST00000509389 RSF1Q96T23 1441 aaPredicted RBP27.46■■□□□ 1.99
HMGCL-208ENST00000509389 MRC2Q9UBG0 1479 aa27.38■■□□□ 1.97
HMGCL-208ENST00000509389 TOP2AP11388 1531 aaKnown RBP27.34■■□□□ 1.97
HMGCL-208ENST00000509389 WDR62O43379 1518 aa27.31■■□□□ 1.96
HMGCL-208ENST00000509389 CEP164Q9UPV0 1460 aa27.28■■□□□ 1.96
HMGCL-208ENST00000509389 CFTRP13569 1480 aa27.28■■□□□ 1.96
HMGCL-208ENST00000509389 FANCD2Q9BXW9 1451 aa27.27■■□□□ 1.96
HMGCL-208ENST00000509389 URB2Q14146 1524 aaKnown RBP27.05■■□□□ 1.92
HMGCL-208ENST00000509389 CCDC88BA6NC98 1476 aa27.04■■□□□ 1.92
HMGCL-208ENST00000509389 PRDM2Q13029 1718 aa27.03■■□□□ 1.92
HMGCL-208ENST00000509389 TOPBP1Q92547 1522 aa26.77■■□□□ 1.88
HMGCL-208ENST00000509389 OSCARQ8IYS5 282 aa26.75■■□□□ 1.87
HMGCL-208ENST00000509389 TRIM41Q8WV44 630 aa26.74■■□□□ 1.87
HMGCL-208ENST00000509389 IFT140Q96RY7 1462 aa26.74■■□□□ 1.87
HMGCL-208ENST00000509389 ZNF608Q9ULD9 1512 aaPredicted RBP26.71■■□□□ 1.87
HMGCL-208ENST00000509389 ABCC8Q09428 1581 aa26.7■■□□□ 1.86
HMGCL-208ENST00000509389 DNMBPQ6XZF7 1577 aa26.67■■□□□ 1.86
HMGCL-208ENST00000509389 EIF4G3O43432 1585 aaKnown RBP26.56■■□□□ 1.84
HMGCL-208ENST00000509389 TARBP1Q13395 1621 aaKnown RBP26.53■■□□□ 1.84
HMGCL-208ENST00000509389 POLA1P09884 1462 aaPredicted RBP26.49■■□□□ 1.83
HMGCL-208ENST00000509389 AQRO60306 1485 aaKnown RBP eCLIP26.47■■□□□ 1.83
HMGCL-208ENST00000509389 RIMBP3CA6NJZ7 1639 aa26.42■■□□□ 1.82
HMGCL-208ENST00000509389 RIMBP3BA6NNM3 1639 aa26.42■■□□□ 1.82
HMGCL-208ENST00000509389 RIMBP3Q9UFD9 1639 aa26.42■■□□□ 1.82
HMGCL-208ENST00000509389 RAD54L2Q9Y4B4 1467 aa26.4■■□□□ 1.82
HMGCL-208ENST00000509389 SOGA1O94964 1423 aa26.38■■□□□ 1.81
HMGCL-208ENST00000509389 CHD1O14646 1710 aa26.36■■□□□ 1.81
HMGCL-208ENST00000509389 FGD5Q6ZNL6 1462 aa26.34■■□□□ 1.81
HMGCL-208ENST00000509389 ARHGEF11O15085 1522 aa26.33■■□□□ 1.81
HMGCL-208ENST00000509389 CUX1P39880 1505 aa26.33■■□□□ 1.81
HMGCL-208ENST00000509389 TDRD9Q8NDG6 1382 aaKnown RBP26.32■■□□□ 1.8
HMGCL-208ENST00000509389 SUPT5HO00267 1087 aaKnown RBP26.3■■□□□ 1.8
HMGCL-208ENST00000509389 FBLN2P98095 1184 aa26.28■■□□□ 1.8
HMGCL-208ENST00000509389 WDR97A6NE52 1622 aa26.24■■□□□ 1.79
HMGCL-208ENST00000509389 SNAPC4Q5SXM2 1469 aa26.19■■□□□ 1.78
HMGCL-208ENST00000509389 CYB5RLQ6IPT4 315 aa26.13■■□□□ 1.77
HMGCL-208ENST00000509389 GRIN2BQ13224 1484 aa26.13■■□□□ 1.77
HMGCL-208ENST00000509389 MAGI1Q96QZ7 1491 aaPredicted RBP26.12■■□□□ 1.77
HMGCL-208ENST00000509389 CHMP7Q8WUX9 453 aaPredicted RBP26.09■■□□□ 1.77
HMGCL-208ENST00000509389 ARAP1Q96P48 1450 aa26.07■■□□□ 1.76
HMGCL-208ENST00000509389 PBRM1Q86U86 1689 aa26.05■■□□□ 1.76
HMGCL-208ENST00000509389 GAPVD1Q14C86 1478 aa26.05■■□□□ 1.76
HMGCL-208ENST00000509389 CLASP1Q7Z460 1538 aa26.05■■□□□ 1.76
HMGCL-208ENST00000509389 ABCA10Q8WWZ4 1543 aa26.04■■□□□ 1.76
HMGCL-208ENST00000509389 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
HMGCL-208ENST00000509389 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
HMGCL-208ENST00000509389 ABCA5Q8WWZ7 1642 aa26■■□□□ 1.75
HMGCL-208ENST00000509389 WRNQ14191 1432 aaPredicted RBP eCLIP25.94■■□□□ 1.74
HMGCL-208ENST00000509389 BIVM-ERCC5R4GMW8 1640 aa25.93■■□□□ 1.74
HMGCL-208ENST00000509389 TOP2BQ02880 1626 aa25.92■■□□□ 1.74
HMGCL-208ENST00000509389 TRHP20396 242 aaPredicted RBP25.82■■□□□ 1.72
HMGCL-208ENST00000509389 GRIN2AQ12879 1464 aa25.8■■□□□ 1.72
HMGCL-208ENST00000509389 ADAMTS12P58397 1594 aa25.79■■□□□ 1.72
HMGCL-208ENST00000509389 FHAD1B1AJZ9 1412 aa25.72■■□□□ 1.71
HMGCL-208ENST00000509389 NUP160Q12769 1436 aa25.71■■□□□ 1.71
HMGCL-208ENST00000509389 CEP170Q5SW79 1584 aa25.71■■□□□ 1.71
HMGCL-208ENST00000509389 ERICH3Q5RHP9 1530 aa25.71■■□□□ 1.71
HMGCL-208ENST00000509389 ERCC6L2Q5T890 1561 aa25.66■■□□□ 1.7
HMGCL-208ENST00000509389 SHROOM2Q13796 1616 aa25.6■■□□□ 1.69
HMGCL-208ENST00000509389 PRG4Q92954 1404 aaPredicted RBP25.46■■□□□ 1.67
HMGCL-208ENST00000509389 JPH4Q96JJ6 628 aa25.45■■□□□ 1.67
HMGCL-208ENST00000509389 RUSC2Q8N2Y8 1516 aa25.43■■□□□ 1.66
HMGCL-208ENST00000509389 IGF1RP08069 1367 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms