RNA–Protein interactions for RNA: ENST00000509258.5

RNF4-212, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-212ENST00000509258 NISCHQ9Y2I1 1504 aa27.3■■□□□ 1.96
RNF4-212ENST00000509258 ABCC9O60706 1549 aa24.53■■□□□ 1.52
RNF4-212ENST00000509258 CCDC180Q9P1Z9 1646 aa24.51■■□□□ 1.51
RNF4-212ENST00000509258 RB1CC1Q8TDY2 1594 aa23.36■■□□□ 1.33
RNF4-212ENST00000509258 NACADO15069 1562 aa23.18■■□□□ 1.3
RNF4-212ENST00000509258 DNAJC5BQ9UF47 199 aa23.01■■□□□ 1.27
RNF4-212ENST00000509258 DCAF8L2P0C7V8 631 aa22.95■■□□□ 1.26
RNF4-212ENST00000509258 MYO15BQ96JP2 1530 aa22.87■■□□□ 1.25
RNF4-212ENST00000509258 UNC13AQ9UPW8 1703 aa22.81■■□□□ 1.24
RNF4-212ENST00000509258 PABPN1Q86U42 306 aaKnown RBP eCLIP22.79■■□□□ 1.24
RNF4-212ENST00000509258 ZCCHC6Q5VYS8 1495 aaKnown RBP22.69■■□□□ 1.22
RNF4-212ENST00000509258 BICRAQ9NZM4 1560 aa22.64■■□□□ 1.22
RNF4-212ENST00000509258 DCAF1Q9Y4B6 1507 aa22.54■■□□□ 1.2
RNF4-212ENST00000509258 SHROOM4Q9ULL8 1493 aa22.44■■□□□ 1.18
RNF4-212ENST00000509258 SCRIBQ14160 1630 aa22.31■■□□□ 1.16
RNF4-212ENST00000509258 CC2D2AQ9P2K1 1620 aa22.17■■□□□ 1.14
RNF4-212ENST00000509258 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
RNF4-212ENST00000509258 EIF4G1Q04637 1599 aaKnown RBP22.12■■□□□ 1.13
RNF4-212ENST00000509258 NCAPD3P42695 1498 aa21.39■■□□□ 1.02
RNF4-212ENST00000509258 ATAD2BQ9ULI0 1458 aa21.31■■□□□ 1
RNF4-212ENST00000509258 SMARCA4P51532 1647 aa21.29■■□□□ 1
RNF4-212ENST00000509258 SMARCA2P51531 1590 aa21.27■■□□□ 1
RNF4-212ENST00000509258 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
RNF4-212ENST00000509258 DNAJC5Q9H3Z4 198 aa21.25■□□□□ 0.99
RNF4-212ENST00000509258 CUX2O14529 1486 aa21.23■□□□□ 0.99
RNF4-212ENST00000509258 ERCC6Q03468 1493 aa21.23■□□□□ 0.99
RNF4-212ENST00000509258 BAZ1AQ9NRL2 1556 aaPredicted RBP21.18■□□□□ 0.98
RNF4-212ENST00000509258 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
RNF4-212ENST00000509258 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
RNF4-212ENST00000509258 PEG3Q9GZU2 1588 aa21.09■□□□□ 0.97
RNF4-212ENST00000509258 NESP48681 1621 aa21.04■□□□□ 0.96
RNF4-212ENST00000509258 LAMC3Q9Y6N6 1575 aa20.93■□□□□ 0.94
RNF4-212ENST00000509258 WIZO95785 1651 aa20.89■□□□□ 0.94
RNF4-212ENST00000509258 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.93
RNF4-212ENST00000509258 PDS5BQ9NTI5 1447 aa20.82■□□□□ 0.92
RNF4-212ENST00000509258 KIF21AQ7Z4S6 1674 aa20.77■□□□□ 0.92
RNF4-212ENST00000509258 CADPSQ9ULU8 1353 aa20.73■□□□□ 0.91
RNF4-212ENST00000509258 RSF1Q96T23 1441 aaPredicted RBP20.68■□□□□ 0.9
RNF4-212ENST00000509258 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
RNF4-212ENST00000509258 WDR62O43379 1518 aa20.6■□□□□ 0.89
RNF4-212ENST00000509258 CEP164Q9UPV0 1460 aa20.56■□□□□ 0.88
RNF4-212ENST00000509258 TOP2AP11388 1531 aaKnown RBP20.55■□□□□ 0.88
RNF4-212ENST00000509258 FANCD2Q9BXW9 1451 aa20.5■□□□□ 0.87
RNF4-212ENST00000509258 CFTRP13569 1480 aa20.5■□□□□ 0.87
RNF4-212ENST00000509258 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
RNF4-212ENST00000509258 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
RNF4-212ENST00000509258 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
RNF4-212ENST00000509258 TRIM41Q8WV44 630 aa20.26■□□□□ 0.83
RNF4-212ENST00000509258 OSCARQ8IYS5 282 aa20.19■□□□□ 0.82
RNF4-212ENST00000509258 IFT140Q96RY7 1462 aa20.14■□□□□ 0.81
RNF4-212ENST00000509258 TOPBP1Q92547 1522 aa20.1■□□□□ 0.81
RNF4-212ENST00000509258 ABCC8Q09428 1581 aa20.08■□□□□ 0.8
RNF4-212ENST00000509258 ZNF608Q9ULD9 1512 aaPredicted RBP20.07■□□□□ 0.8
RNF4-212ENST00000509258 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
RNF4-212ENST00000509258 EIF4G3O43432 1585 aaKnown RBP20■□□□□ 0.79
RNF4-212ENST00000509258 RIMBP3CA6NJZ7 1639 aa19.94■□□□□ 0.78
RNF4-212ENST00000509258 RIMBP3BA6NNM3 1639 aa19.94■□□□□ 0.78
RNF4-212ENST00000509258 RIMBP3Q9UFD9 1639 aa19.94■□□□□ 0.78
RNF4-212ENST00000509258 TARBP1Q13395 1621 aaKnown RBP19.92■□□□□ 0.78
RNF4-212ENST00000509258 ARHGEF11O15085 1522 aa19.91■□□□□ 0.78
RNF4-212ENST00000509258 POLA1P09884 1462 aaPredicted RBP19.9■□□□□ 0.78
RNF4-212ENST00000509258 AQRO60306 1485 aaKnown RBP eCLIP19.87■□□□□ 0.773e-8■■■■■ 36.7
RNF4-212ENST00000509258 SUPT5HO00267 1087 aaKnown RBP19.86■□□□□ 0.77
RNF4-212ENST00000509258 CHD1O14646 1710 aa19.82■□□□□ 0.76
RNF4-212ENST00000509258 CUX1P39880 1505 aa19.81■□□□□ 0.76
RNF4-212ENST00000509258 RAD54L2Q9Y4B4 1467 aa19.79■□□□□ 0.76
RNF4-212ENST00000509258 SOGA1O94964 1423 aa19.78■□□□□ 0.76
RNF4-212ENST00000509258 WDR97A6NE52 1622 aa19.77■□□□□ 0.76
RNF4-212ENST00000509258 FGD5Q6ZNL6 1462 aa19.76■□□□□ 0.75
RNF4-212ENST00000509258 FBLN2P98095 1184 aa19.75■□□□□ 0.75
RNF4-212ENST00000509258 TDRD9Q8NDG6 1382 aaKnown RBP19.74■□□□□ 0.75
RNF4-212ENST00000509258 CYB5RLQ6IPT4 315 aa19.71■□□□□ 0.75
RNF4-212ENST00000509258 SNAPC4Q5SXM2 1469 aa19.71■□□□□ 0.75
RNF4-212ENST00000509258 ARAP1Q96P48 1450 aa19.69■□□□□ 0.74
RNF4-212ENST00000509258 MAGI1Q96QZ7 1491 aaPredicted RBP19.67■□□□□ 0.74
RNF4-212ENST00000509258 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
RNF4-212ENST00000509258 SYNJ1O43426 1573 aa19.63■□□□□ 0.73
RNF4-212ENST00000509258 CLASP1Q7Z460 1538 aa19.63■□□□□ 0.73
RNF4-212ENST00000509258 CHMP7Q8WUX9 453 aaPredicted RBP19.61■□□□□ 0.73
RNF4-212ENST00000509258 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
RNF4-212ENST00000509258 PBRM1Q86U86 1689 aa19.58■□□□□ 0.72
RNF4-212ENST00000509258 GAPVD1Q14C86 1478 aa19.56■□□□□ 0.72
RNF4-212ENST00000509258 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
RNF4-212ENST00000509258 ABCA10Q8WWZ4 1543 aa19.54■□□□□ 0.72
RNF4-212ENST00000509258 ABCA5Q8WWZ7 1642 aa19.53■□□□□ 0.72
RNF4-212ENST00000509258 TRHP20396 242 aaPredicted RBP19.52■□□□□ 0.72
RNF4-212ENST00000509258 TOP2BQ02880 1626 aa19.51■□□□□ 0.71
RNF4-212ENST00000509258 WRNQ14191 1432 aaPredicted RBP eCLIP19.45■□□□□ 0.72e-6■■■■■ 29.9
RNF4-212ENST00000509258 GRIN2AQ12879 1464 aa19.41■□□□□ 0.7
RNF4-212ENST00000509258 ADAMTS12P58397 1594 aa19.39■□□□□ 0.69
RNF4-212ENST00000509258 NUP160Q12769 1436 aa19.34■□□□□ 0.69
RNF4-212ENST00000509258 FHAD1B1AJZ9 1412 aa19.32■□□□□ 0.68
RNF4-212ENST00000509258 CEP170Q5SW79 1584 aa19.32■□□□□ 0.68
RNF4-212ENST00000509258 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
RNF4-212ENST00000509258 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.68
RNF4-212ENST00000509258 SHROOM2Q13796 1616 aa19.25■□□□□ 0.67
RNF4-212ENST00000509258 PRG4Q92954 1404 aaPredicted RBP19.14■□□□□ 0.65
RNF4-212ENST00000509258 RUSC2Q8N2Y8 1516 aa19.12■□□□□ 0.65
RNF4-212ENST00000509258 AEBP2Q6ZN18 517 aaPredicted RBP19.09■□□□□ 0.65
RNF4-212ENST00000509258 JPH4Q96JJ6 628 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms