RNA–Protein interactions for RNA: ENST00000508952.5

PACRGL-220, Transcript of parkin coregulated like, humanhuman

TSL 1 (best)

Gene PACRGL, Length 987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PACRGL-220ENST00000508952 NISCHQ9Y2I1 1504 aa54.74■■■■■ 6.35
PACRGL-220ENST00000508952 CCDC180Q9P1Z9 1646 aa48.95■■■■■ 5.43
PACRGL-220ENST00000508952 ABCC9O60706 1549 aa48.54■■■■■ 5.36
PACRGL-220ENST00000508952 RB1CC1Q8TDY2 1594 aa46.36■■■■■ 5.01
PACRGL-220ENST00000508952 NACADO15069 1562 aa46.13■■■■■ 4.98
PACRGL-220ENST00000508952 DCAF8L2P0C7V8 631 aa46.03■■■■■ 4.96
PACRGL-220ENST00000508952 MYO15BQ96JP2 1530 aa45.61■■■■■ 4.89
PACRGL-220ENST00000508952 ZCCHC6Q5VYS8 1495 aaKnown RBP45.47■■■■■ 4.87
PACRGL-220ENST00000508952 UNC13AQ9UPW8 1703 aa45.41■■■■■ 4.86
PACRGL-220ENST00000508952 PABPN1Q86U42 306 aaKnown RBP eCLIP45.25■■■■■ 4.83
PACRGL-220ENST00000508952 DCAF1Q9Y4B6 1507 aa45.21■■■■■ 4.83
PACRGL-220ENST00000508952 DNAJC5BQ9UF47 199 aa45.13■■■■■ 4.82
PACRGL-220ENST00000508952 BICRAQ9NZM4 1560 aa45.03■■■■■ 4.8
PACRGL-220ENST00000508952 SCRIBQ14160 1630 aa44.68■■■■■ 4.74
PACRGL-220ENST00000508952 SHROOM4Q9ULL8 1493 aa44.38■■■■■ 4.69
PACRGL-220ENST00000508952 EIF4G1Q04637 1599 aaKnown RBP43.88■■■■■ 4.61
PACRGL-220ENST00000508952 CC2D2AQ9P2K1 1620 aa43.87■■■■■ 4.61
PACRGL-220ENST00000508952 CECR2Q9BXF3 1484 aa43.65■■■■■ 4.58
PACRGL-220ENST00000508952 SMARCA4P51532 1647 aa42.64■■■■■ 4.42
PACRGL-220ENST00000508952 NCAPD3P42695 1498 aa42.57■■■■■ 4.41
PACRGL-220ENST00000508952 ATAD2BQ9ULI0 1458 aa42.53■■■■■ 4.4
PACRGL-220ENST00000508952 BAZ1AQ9NRL2 1556 aaPredicted RBP42.46■■■■■ 4.39
PACRGL-220ENST00000508952 SMARCA2P51531 1590 aa42.44■■■■■ 4.38
PACRGL-220ENST00000508952 HMGXB3Q12766 1538 aa42.33■■■■■ 4.37
PACRGL-220ENST00000508952 MROH2BQ7Z745 1585 aa42.22■■■■■ 4.35
PACRGL-220ENST00000508952 PEG3Q9GZU2 1588 aa42.18■■■■■ 4.34
PACRGL-220ENST00000508952 BAZ1BQ9UIG0 1483 aaKnown RBP42.16■■■■■ 4.34
PACRGL-220ENST00000508952 ERCC6Q03468 1493 aa41.85■■■■■ 4.29
PACRGL-220ENST00000508952 NESP48681 1621 aa41.84■■■■■ 4.29
PACRGL-220ENST00000508952 WIZO95785 1651 aa41.76■■■■■ 4.28
PACRGL-220ENST00000508952 CUX2O14529 1486 aa41.6■■■■■ 4.25
PACRGL-220ENST00000508952 LAMC3Q9Y6N6 1575 aa41.57■■■■■ 4.25
PACRGL-220ENST00000508952 RSF1Q96T23 1441 aaPredicted RBP41.47■■■■■ 4.23
PACRGL-220ENST00000508952 KIF21AQ7Z4S6 1674 aa41.35■■■■■ 4.21
PACRGL-220ENST00000508952 THOC2Q8NI27 1593 aaKnown RBP41.33■■■■■ 4.21
PACRGL-220ENST00000508952 CADPSQ9ULU8 1353 aa41.3■■■■■ 4.2
PACRGL-220ENST00000508952 PDS5BQ9NTI5 1447 aa41.28■■■■■ 4.2
PACRGL-220ENST00000508952 TOP2AP11388 1531 aaKnown RBP41.23■■■■■ 4.19
PACRGL-220ENST00000508952 DNAJC5Q9H3Z4 198 aa41.06■■■■■ 4.16
PACRGL-220ENST00000508952 CFTRP13569 1480 aa40.94■■■■■ 4.14
PACRGL-220ENST00000508952 MRC2Q9UBG0 1479 aa40.94■■■■■ 4.14
PACRGL-220ENST00000508952 CEP164Q9UPV0 1460 aa40.87■■■■■ 4.13
PACRGL-220ENST00000508952 FANCD2Q9BXW9 1451 aa40.86■■■■■ 4.13
PACRGL-220ENST00000508952 WDR62O43379 1518 aa40.83■■■■■ 4.13
PACRGL-220ENST00000508952 CCDC88BA6NC98 1476 aa40.75■■■■■ 4.11
PACRGL-220ENST00000508952 PRDM2Q13029 1718 aa40.64■■■■■ 4.1
PACRGL-220ENST00000508952 URB2Q14146 1524 aaKnown RBP40.52■■■■■ 4.08
PACRGL-220ENST00000508952 TOPBP1Q92547 1522 aa40.16■■■■■ 4.02
PACRGL-220ENST00000508952 DNMBPQ6XZF7 1577 aa40.05■■■■■ 4
PACRGL-220ENST00000508952 ABCC8Q09428 1581 aa40.04■■■■■ 4
PACRGL-220ENST00000508952 IFT140Q96RY7 1462 aa40.01■■■■■ 4
PACRGL-220ENST00000508952 SUPT5HO00267 1087 aaKnown RBP40■■■■□ 3.99
PACRGL-220ENST00000508952 ZNF608Q9ULD9 1512 aaPredicted RBP39.96■■■■□ 3.99
PACRGL-220ENST00000508952 EIF4G3O43432 1585 aaKnown RBP39.78■■■■□ 3.96
PACRGL-220ENST00000508952 TARBP1Q13395 1621 aaKnown RBP39.78■■■■□ 3.96
PACRGL-220ENST00000508952 POLA1P09884 1462 aaPredicted RBP39.77■■■■□ 3.96
PACRGL-220ENST00000508952 OSCARQ8IYS5 282 aa39.75■■■■□ 3.95
PACRGL-220ENST00000508952 AQRO60306 1485 aaKnown RBP eCLIP39.64■■■■□ 3.94
PACRGL-220ENST00000508952 CUX1P39880 1505 aa39.64■■■■□ 3.94
PACRGL-220ENST00000508952 RAD54L2Q9Y4B4 1467 aa39.63■■■■□ 3.94
PACRGL-220ENST00000508952 FGD5Q6ZNL6 1462 aa39.6■■■■□ 3.93
PACRGL-220ENST00000508952 SOGA1O94964 1423 aa39.57■■■■□ 3.93
PACRGL-220ENST00000508952 TRIM41Q8WV44 630 aa39.51■■■■□ 3.92
PACRGL-220ENST00000508952 TDRD9Q8NDG6 1382 aaKnown RBP39.46■■■■□ 3.91
PACRGL-220ENST00000508952 CHD1O14646 1710 aa39.43■■■■□ 3.9
PACRGL-220ENST00000508952 WDR97A6NE52 1622 aa39.35■■■■□ 3.89
PACRGL-220ENST00000508952 FBLN2P98095 1184 aa39.28■■■■□ 3.88
PACRGL-220ENST00000508952 RIMBP3CA6NJZ7 1639 aa39.28■■■■□ 3.88
PACRGL-220ENST00000508952 RIMBP3BA6NNM3 1639 aa39.28■■■■□ 3.88
PACRGL-220ENST00000508952 RIMBP3Q9UFD9 1639 aa39.28■■■■□ 3.88
PACRGL-220ENST00000508952 SNAPC4Q5SXM2 1469 aa39.25■■■■□ 3.87
PACRGL-220ENST00000508952 GRIN2BQ13224 1484 aa39.17■■■■□ 3.86
PACRGL-220ENST00000508952 ARHGEF11O15085 1522 aa39.17■■■■□ 3.86
PACRGL-220ENST00000508952 ABCA10Q8WWZ4 1543 aa39.14■■■■□ 3.86
PACRGL-220ENST00000508952 MAGI1Q96QZ7 1491 aaPredicted RBP39.14■■■■□ 3.86
PACRGL-220ENST00000508952 PBRM1Q86U86 1689 aa39.13■■■■□ 3.86
PACRGL-220ENST00000508952 BIVM-ERCC5R4GMW8 1640 aa39.12■■■■□ 3.85
PACRGL-220ENST00000508952 WRNQ14191 1432 aaPredicted RBP eCLIP39.12■■■■□ 3.85
PACRGL-220ENST00000508952 TOP2BQ02880 1626 aa39.11■■■■□ 3.85
PACRGL-220ENST00000508952 SYNJ1O43426 1573 aa39.11■■■■□ 3.85
PACRGL-220ENST00000508952 GAPVD1Q14C86 1478 aa39.11■■■■□ 3.85
PACRGL-220ENST00000508952 ABCA5Q8WWZ7 1642 aa39.08■■■■□ 3.85
PACRGL-220ENST00000508952 CHMP7Q8WUX9 453 aaPredicted RBP39.04■■■■□ 3.84
PACRGL-220ENST00000508952 SYNJ2O15056 1496 aa39■■■■□ 3.83
PACRGL-220ENST00000508952 CLASP1Q7Z460 1538 aa38.94■■■■□ 3.82
PACRGL-220ENST00000508952 CYB5RLQ6IPT4 315 aa38.83■■■■□ 3.81
PACRGL-220ENST00000508952 ARAP1Q96P48 1450 aa38.83■■■■□ 3.81
PACRGL-220ENST00000508952 ADAMTS12P58397 1594 aa38.76■■■■□ 3.8
PACRGL-220ENST00000508952 GRIN2AQ12879 1464 aa38.7■■■■□ 3.79
PACRGL-220ENST00000508952 ERICH3Q5RHP9 1530 aa38.66■■■■□ 3.78
PACRGL-220ENST00000508952 FHAD1B1AJZ9 1412 aa38.62■■■■□ 3.77
PACRGL-220ENST00000508952 CEP170Q5SW79 1584 aa38.57■■■■□ 3.77
PACRGL-220ENST00000508952 NUP160Q12769 1436 aa38.53■■■■□ 3.76
PACRGL-220ENST00000508952 ERCC6L2Q5T890 1561 aa38.4■■■■□ 3.74
PACRGL-220ENST00000508952 SHROOM2Q13796 1616 aa38.35■■■■□ 3.73
PACRGL-220ENST00000508952 KIF27Q86VH2 1401 aa38.32■■■■□ 3.73
PACRGL-220ENST00000508952 TRHP20396 242 aaPredicted RBP38.27■■■■□ 3.72
PACRGL-220ENST00000508952 IGF1RP08069 1367 aa38.26■■■■□ 3.72
PACRGL-220ENST00000508952 CUL7Q14999 1698 aa38.21■■■■□ 3.71
PACRGL-220ENST00000508952 RUSC2Q8N2Y8 1516 aa38.21■■■■□ 3.71
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms