RNA–Protein interactions for RNA: ENST00000508848.5

POLR2J3-213, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 5

Gene POLR2J3, Length 1,030 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-213ENST00000508848 NISCHQ9Y2I1 1504 aa25.74■■□□□ 1.71
POLR2J3-213ENST00000508848 CCDC180Q9P1Z9 1646 aa22.93■■□□□ 1.26
POLR2J3-213ENST00000508848 ABCC9O60706 1549 aa22.2■■□□□ 1.14
POLR2J3-213ENST00000508848 NACADO15069 1562 aa21.56■■□□□ 1.04
POLR2J3-213ENST00000508848 MYO15BQ96JP2 1530 aa21.55■■□□□ 1.04
POLR2J3-213ENST00000508848 RB1CC1Q8TDY2 1594 aa21.53■■□□□ 1.04
POLR2J3-213ENST00000508848 ZCCHC6Q5VYS8 1495 aaKnown RBP21.43■■□□□ 1.02
POLR2J3-213ENST00000508848 DCAF1Q9Y4B6 1507 aa21.43■■□□□ 1.02
POLR2J3-213ENST00000508848 DCAF8L2P0C7V8 631 aa21.32■■□□□ 1
POLR2J3-213ENST00000508848 AEBP2Q6ZN18 517 aaPredicted RBP21.21■□□□□ 0.99
POLR2J3-213ENST00000508848 UNC13AQ9UPW8 1703 aa21■□□□□ 0.95
POLR2J3-213ENST00000508848 BICRAQ9NZM4 1560 aa20.84■□□□□ 0.93
POLR2J3-213ENST00000508848 SHROOM4Q9ULL8 1493 aa20.79■□□□□ 0.92
POLR2J3-213ENST00000508848 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.91
POLR2J3-213ENST00000508848 SCRIBQ14160 1630 aa20.71■□□□□ 0.91
POLR2J3-213ENST00000508848 DNAJC5BQ9UF47 199 aa20.4■□□□□ 0.86
POLR2J3-213ENST00000508848 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
POLR2J3-213ENST00000508848 CC2D2AQ9P2K1 1620 aa20.16■□□□□ 0.82
POLR2J3-213ENST00000508848 CECR2Q9BXF3 1484 aa20.01■□□□□ 0.79
POLR2J3-213ENST00000508848 BAZ1AQ9NRL2 1556 aaPredicted RBP19.95■□□□□ 0.78
POLR2J3-213ENST00000508848 SMARCA4P51532 1647 aa19.93■□□□□ 0.78
POLR2J3-213ENST00000508848 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
POLR2J3-213ENST00000508848 NCAPD3P42695 1498 aa19.9■□□□□ 0.78
POLR2J3-213ENST00000508848 SMARCA2P51531 1590 aa19.86■□□□□ 0.77
POLR2J3-213ENST00000508848 PEG3Q9GZU2 1588 aa19.85■□□□□ 0.77
POLR2J3-213ENST00000508848 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
POLR2J3-213ENST00000508848 HMGXB3Q12766 1538 aa19.77■□□□□ 0.76
POLR2J3-213ENST00000508848 MROH2BQ7Z745 1585 aa19.77■□□□□ 0.76
POLR2J3-213ENST00000508848 BAZ1BQ9UIG0 1483 aaKnown RBP19.63■□□□□ 0.73
POLR2J3-213ENST00000508848 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
POLR2J3-213ENST00000508848 WIZO95785 1651 aa19.53■□□□□ 0.72
POLR2J3-213ENST00000508848 TOP2AP11388 1531 aaKnown RBP19.39■□□□□ 0.69
POLR2J3-213ENST00000508848 LAMC3Q9Y6N6 1575 aa19.34■□□□□ 0.69
POLR2J3-213ENST00000508848 CADPSQ9ULU8 1353 aa19.28■□□□□ 0.68
POLR2J3-213ENST00000508848 NESP48681 1621 aa19.22■□□□□ 0.67
POLR2J3-213ENST00000508848 PDS5BQ9NTI5 1447 aa19.2■□□□□ 0.66
POLR2J3-213ENST00000508848 CFTRP13569 1480 aa19.18■□□□□ 0.66
POLR2J3-213ENST00000508848 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
POLR2J3-213ENST00000508848 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
POLR2J3-213ENST00000508848 CUX2O14529 1486 aa19.08■□□□□ 0.64
POLR2J3-213ENST00000508848 PRDM2Q13029 1718 aa19.04■□□□□ 0.64
POLR2J3-213ENST00000508848 KIF21AQ7Z4S6 1674 aa19.04■□□□□ 0.64
POLR2J3-213ENST00000508848 THOC2Q8NI27 1593 aaKnown RBP18.99■□□□□ 0.63
POLR2J3-213ENST00000508848 FANCD2Q9BXW9 1451 aa18.99■□□□□ 0.63
POLR2J3-213ENST00000508848 SUPT5HO00267 1087 aaKnown RBP18.98■□□□□ 0.63
POLR2J3-213ENST00000508848 CEP164Q9UPV0 1460 aa18.97■□□□□ 0.63
POLR2J3-213ENST00000508848 MRC2Q9UBG0 1479 aa18.94■□□□□ 0.62
POLR2J3-213ENST00000508848 WDR62O43379 1518 aa18.9■□□□□ 0.62
POLR2J3-213ENST00000508848 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
POLR2J3-213ENST00000508848 URB2Q14146 1524 aaKnown RBP18.79■□□□□ 0.6
POLR2J3-213ENST00000508848 TOPBP1Q92547 1522 aa18.7■□□□□ 0.58
POLR2J3-213ENST00000508848 DNMBPQ6XZF7 1577 aa18.69■□□□□ 0.58
POLR2J3-213ENST00000508848 IFT140Q96RY7 1462 aa18.61■□□□□ 0.57
POLR2J3-213ENST00000508848 CUX1P39880 1505 aa18.54■□□□□ 0.56
POLR2J3-213ENST00000508848 POLA1P09884 1462 aaPredicted RBP18.53■□□□□ 0.56
POLR2J3-213ENST00000508848 TARBP1Q13395 1621 aaKnown RBP18.52■□□□□ 0.56
POLR2J3-213ENST00000508848 WDR97A6NE52 1622 aa18.49■□□□□ 0.55
POLR2J3-213ENST00000508848 SOGA1O94964 1423 aa18.49■□□□□ 0.55
POLR2J3-213ENST00000508848 FGD5Q6ZNL6 1462 aa18.46■□□□□ 0.55
POLR2J3-213ENST00000508848 DNAJC5Q9H3Z4 198 aa18.46■□□□□ 0.55
POLR2J3-213ENST00000508848 WRNQ14191 1432 aaPredicted RBP eCLIP18.46■□□□□ 0.551e-6■■■■■ 58.5
POLR2J3-213ENST00000508848 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
POLR2J3-213ENST00000508848 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
POLR2J3-213ENST00000508848 ZNF608Q9ULD9 1512 aaPredicted RBP18.42■□□□□ 0.54
POLR2J3-213ENST00000508848 RAD54L2Q9Y4B4 1467 aa18.39■□□□□ 0.53
POLR2J3-213ENST00000508848 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
POLR2J3-213ENST00000508848 EIF4G3O43432 1585 aaKnown RBP18.37■□□□□ 0.53
POLR2J3-213ENST00000508848 SYNJ1O43426 1573 aa18.35■□□□□ 0.53
POLR2J3-213ENST00000508848 SENP3Q9H4L4 574 aaPredicted RBP18.35■□□□□ 0.53
POLR2J3-213ENST00000508848 AQRO60306 1485 aaKnown RBP eCLIP18.34■□□□□ 0.534e-8■■■■□ 22.5
POLR2J3-213ENST00000508848 TDRD9Q8NDG6 1382 aaKnown RBP18.31■□□□□ 0.52
POLR2J3-213ENST00000508848 OSCARQ8IYS5 282 aa18.29■□□□□ 0.52
POLR2J3-213ENST00000508848 GRIN2BQ13224 1484 aa18.28■□□□□ 0.52
POLR2J3-213ENST00000508848 GAPVD1Q14C86 1478 aa18.26■□□□□ 0.51
POLR2J3-213ENST00000508848 ABCA5Q8WWZ7 1642 aa18.26■□□□□ 0.51
POLR2J3-213ENST00000508848 MAGI1Q96QZ7 1491 aaPredicted RBP18.26■□□□□ 0.51
POLR2J3-213ENST00000508848 PBRM1Q86U86 1689 aa18.18■□□□□ 0.5
POLR2J3-213ENST00000508848 ERICH3Q5RHP9 1530 aa18.18■□□□□ 0.5
POLR2J3-213ENST00000508848 SNAPC4Q5SXM2 1469 aa18.16■□□□□ 0.5
POLR2J3-213ENST00000508848 SYNJ2O15056 1496 aa18.15■□□□□ 0.5
POLR2J3-213ENST00000508848 CHD1O14646 1710 aa18.14■□□□□ 0.49
POLR2J3-213ENST00000508848 CHMP7Q8WUX9 453 aaPredicted RBP18.12■□□□□ 0.49
POLR2J3-213ENST00000508848 KIF27Q86VH2 1401 aa18.11■□□□□ 0.49
POLR2J3-213ENST00000508848 FHAD1B1AJZ9 1412 aa18.09■□□□□ 0.49
POLR2J3-213ENST00000508848 FBLN2P98095 1184 aa18.06■□□□□ 0.48
POLR2J3-213ENST00000508848 IGF1RP08069 1367 aa18.04■□□□□ 0.48
POLR2J3-213ENST00000508848 ADAMTS12P58397 1594 aa18.04■□□□□ 0.48
POLR2J3-213ENST00000508848 TRIM41Q8WV44 630 aa18.03■□□□□ 0.48
POLR2J3-213ENST00000508848 GRIN2AQ12879 1464 aa18.01■□□□□ 0.47
POLR2J3-213ENST00000508848 CLASP1Q7Z460 1538 aa17.99■□□□□ 0.47
POLR2J3-213ENST00000508848 CUL7Q14999 1698 aa17.99■□□□□ 0.47
POLR2J3-213ENST00000508848 NUP160Q12769 1436 aa17.98■□□□□ 0.47
POLR2J3-213ENST00000508848 PHF23Q9BUL5 403 aaPredicted RBP17.92■□□□□ 0.46
POLR2J3-213ENST00000508848 CARMIL1Q5VZK9 1371 aa17.91■□□□□ 0.46
POLR2J3-213ENST00000508848 ARHGEF11O15085 1522 aa17.91■□□□□ 0.46
POLR2J3-213ENST00000508848 RIMBP3CA6NJZ7 1639 aa17.9■□□□□ 0.46
POLR2J3-213ENST00000508848 RIMBP3BA6NNM3 1639 aa17.9■□□□□ 0.46
POLR2J3-213ENST00000508848 RIMBP3Q9UFD9 1639 aa17.9■□□□□ 0.46
POLR2J3-213ENST00000508848 CEP170Q5SW79 1584 aa17.88■□□□□ 0.45
POLR2J3-213ENST00000508848 EEA1Q15075 1411 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms