RNA–Protein interactions for RNA: ENST00000508800.1

NEDD9-212, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 834 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-212ENST00000508800 NISCHQ9Y2I1 1504 aa29.12■■■□□ 2.25
NEDD9-212ENST00000508800 ABCC9O60706 1549 aa27.01■■□□□ 1.91
NEDD9-212ENST00000508800 CCDC180Q9P1Z9 1646 aa26.54■■□□□ 1.84
NEDD9-212ENST00000508800 DNAJC5BQ9UF47 199 aa25.85■■□□□ 1.73
NEDD9-212ENST00000508800 RB1CC1Q8TDY2 1594 aa25.56■■□□□ 1.68
NEDD9-212ENST00000508800 NACADO15069 1562 aa25.22■■□□□ 1.63
NEDD9-212ENST00000508800 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
NEDD9-212ENST00000508800 UNC13AQ9UPW8 1703 aa24.92■■□□□ 1.58
NEDD9-212ENST00000508800 BICRAQ9NZM4 1560 aa24.75■■□□□ 1.55
NEDD9-212ENST00000508800 DCAF8L2P0C7V8 631 aa24.71■■□□□ 1.55
NEDD9-212ENST00000508800 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
NEDD9-212ENST00000508800 SHROOM4Q9ULL8 1493 aa24.55■■□□□ 1.52
NEDD9-212ENST00000508800 CECR2Q9BXF3 1484 aa24.46■■□□□ 1.51
NEDD9-212ENST00000508800 CC2D2AQ9P2K1 1620 aa24.43■■□□□ 1.5
NEDD9-212ENST00000508800 DNAJC5Q9H3Z4 198 aa24.37■■□□□ 1.49
NEDD9-212ENST00000508800 EIF4G1Q04637 1599 aaKnown RBP24.23■■□□□ 1.47
NEDD9-212ENST00000508800 DCAF1Q9Y4B6 1507 aa24.11■■□□□ 1.45
NEDD9-212ENST00000508800 ZCCHC6Q5VYS8 1495 aaKnown RBP24■■□□□ 1.43
NEDD9-212ENST00000508800 SCRIBQ14160 1630 aa23.99■■□□□ 1.43
NEDD9-212ENST00000508800 CUX2O14529 1486 aa23.71■■□□□ 1.39
NEDD9-212ENST00000508800 ERCC6Q03468 1493 aa23.45■■□□□ 1.34
NEDD9-212ENST00000508800 NCAPD3P42695 1498 aa23.25■■□□□ 1.31
NEDD9-212ENST00000508800 HMGXB3Q12766 1538 aa23.07■■□□□ 1.28
NEDD9-212ENST00000508800 ATAD2BQ9ULI0 1458 aa23.05■■□□□ 1.28
NEDD9-212ENST00000508800 SMARCA2P51531 1590 aa23.03■■□□□ 1.28
NEDD9-212ENST00000508800 THOC2Q8NI27 1593 aaKnown RBP23■■□□□ 1.27
NEDD9-212ENST00000508800 NESP48681 1621 aa22.99■■□□□ 1.27
NEDD9-212ENST00000508800 TRIM41Q8WV44 630 aa22.92■■□□□ 1.26
NEDD9-212ENST00000508800 SMARCA4P51532 1647 aa22.88■■□□□ 1.25
NEDD9-212ENST00000508800 LAMC3Q9Y6N6 1575 aa22.88■■□□□ 1.25
NEDD9-212ENST00000508800 BAZ1BQ9UIG0 1483 aaKnown RBP22.81■■□□□ 1.24
NEDD9-212ENST00000508800 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
NEDD9-212ENST00000508800 PDS5BQ9NTI5 1447 aa22.74■■□□□ 1.23
NEDD9-212ENST00000508800 PEG3Q9GZU2 1588 aa22.72■■□□□ 1.23
NEDD9-212ENST00000508800 BAZ1AQ9NRL2 1556 aaPredicted RBP22.7■■□□□ 1.22
NEDD9-212ENST00000508800 MRC2Q9UBG0 1479 aa22.57■■□□□ 1.2
NEDD9-212ENST00000508800 WDR62O43379 1518 aa22.55■■□□□ 1.2
NEDD9-212ENST00000508800 CADPSQ9ULU8 1353 aa22.48■■□□□ 1.19
NEDD9-212ENST00000508800 OSCARQ8IYS5 282 aa22.42■■□□□ 1.18
NEDD9-212ENST00000508800 MROH2BQ7Z745 1585 aa22.37■■□□□ 1.17
NEDD9-212ENST00000508800 CEP164Q9UPV0 1460 aa22.34■■□□□ 1.17
NEDD9-212ENST00000508800 FANCD2Q9BXW9 1451 aa22.23■■□□□ 1.15
NEDD9-212ENST00000508800 RIMBP3CA6NJZ7 1639 aa22.21■■□□□ 1.15
NEDD9-212ENST00000508800 RIMBP3BA6NNM3 1639 aa22.21■■□□□ 1.15
NEDD9-212ENST00000508800 RIMBP3Q9UFD9 1639 aa22.21■■□□□ 1.15
NEDD9-212ENST00000508800 CFTRP13569 1480 aa22.1■■□□□ 1.13
NEDD9-212ENST00000508800 ARHGEF11O15085 1522 aa22.09■■□□□ 1.13
NEDD9-212ENST00000508800 WIZO95785 1651 aa22.07■■□□□ 1.12
NEDD9-212ENST00000508800 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
NEDD9-212ENST00000508800 IFT140Q96RY7 1462 aa21.94■■□□□ 1.1
NEDD9-212ENST00000508800 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
NEDD9-212ENST00000508800 TRHP20396 242 aaPredicted RBP21.87■■□□□ 1.09
NEDD9-212ENST00000508800 CYB5RLQ6IPT4 315 aa21.87■■□□□ 1.09
NEDD9-212ENST00000508800 ZNF608Q9ULD9 1512 aaPredicted RBP21.86■■□□□ 1.09
NEDD9-212ENST00000508800 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
NEDD9-212ENST00000508800 EIF4G3O43432 1585 aaKnown RBP21.79■■□□□ 1.08
NEDD9-212ENST00000508800 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
NEDD9-212ENST00000508800 AEBP2Q6ZN18 517 aaPredicted RBP21.79■■□□□ 1.08
NEDD9-212ENST00000508800 RSF1Q96T23 1441 aaPredicted RBP21.79■■□□□ 1.08
NEDD9-212ENST00000508800 CHD1O14646 1710 aa21.75■■□□□ 1.07
NEDD9-212ENST00000508800 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
NEDD9-212ENST00000508800 TOPBP1Q92547 1522 aa21.73■■□□□ 1.07
NEDD9-212ENST00000508800 DNMBPQ6XZF7 1577 aa21.63■■□□□ 1.05
NEDD9-212ENST00000508800 TARBP1Q13395 1621 aaKnown RBP21.61■■□□□ 1.05
NEDD9-212ENST00000508800 AQRO60306 1485 aaKnown RBP eCLIP21.58■■□□□ 1.04
NEDD9-212ENST00000508800 FBLN2P98095 1184 aa21.56■■□□□ 1.04
NEDD9-212ENST00000508800 CCDC88BA6NC98 1476 aa21.51■■□□□ 1.03
NEDD9-212ENST00000508800 CLASP1Q7Z460 1538 aa21.5■■□□□ 1.03
NEDD9-212ENST00000508800 WDR97A6NE52 1622 aa21.47■■□□□ 1.03
NEDD9-212ENST00000508800 POLA1P09884 1462 aaPredicted RBP21.46■■□□□ 1.03
NEDD9-212ENST00000508800 SYNJ1O43426 1573 aa21.46■■□□□ 1.03
NEDD9-212ENST00000508800 MAGI1Q96QZ7 1491 aaPredicted RBP21.39■■□□□ 1.01
NEDD9-212ENST00000508800 SNAPC4Q5SXM2 1469 aa21.38■■□□□ 1.01
NEDD9-212ENST00000508800 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
NEDD9-212ENST00000508800 SOGA1O94964 1423 aa21.33■■□□□ 1.01
NEDD9-212ENST00000508800 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
NEDD9-212ENST00000508800 RAD54L2Q9Y4B4 1467 aa21.32■■□□□ 1
NEDD9-212ENST00000508800 SYNJ2O15056 1496 aa21.3■■□□□ 1
NEDD9-212ENST00000508800 GAPVD1Q14C86 1478 aa21.3■■□□□ 1
NEDD9-212ENST00000508800 GRIN2BQ13224 1484 aa21.28■■□□□ 1
NEDD9-212ENST00000508800 FGD5Q6ZNL6 1462 aa21.21■□□□□ 0.99
NEDD9-212ENST00000508800 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
NEDD9-212ENST00000508800 CUX1P39880 1505 aa21.07■□□□□ 0.96
NEDD9-212ENST00000508800 KIF13AQ9H1H9 1805 aa21.05■□□□□ 0.96
NEDD9-212ENST00000508800 ABCA5Q8WWZ7 1642 aa21.02■□□□□ 0.96
NEDD9-212ENST00000508800 ERCC6L2Q5T890 1561 aa21.01■□□□□ 0.95
NEDD9-212ENST00000508800 CEP170Q5SW79 1584 aa20.99■□□□□ 0.95
NEDD9-212ENST00000508800 GRIN2AQ12879 1464 aa20.99■□□□□ 0.95
NEDD9-212ENST00000508800 ABCA10Q8WWZ4 1543 aa20.99■□□□□ 0.95
NEDD9-212ENST00000508800 SHROOM2Q13796 1616 aa20.96■□□□□ 0.95
NEDD9-212ENST00000508800 NUP160Q12769 1436 aa20.95■□□□□ 0.94
NEDD9-212ENST00000508800 ADAMTS12P58397 1594 aa20.9■□□□□ 0.94
NEDD9-212ENST00000508800 ILDR1Q86SU0 546 aaPredicted RBP20.85■□□□□ 0.93
NEDD9-212ENST00000508800 ABCC10Q5T3U5 1492 aa20.85■□□□□ 0.93
NEDD9-212ENST00000508800 MAPKBP1O60336 1514 aa20.82■□□□□ 0.92
NEDD9-212ENST00000508800 FHAD1B1AJZ9 1412 aa20.81■□□□□ 0.92
NEDD9-212ENST00000508800 KDM6BO15054 1643 aa20.79■□□□□ 0.92
NEDD9-212ENST00000508800 FAM69CQ0P6D2 419 aa20.79■□□□□ 0.92
NEDD9-212ENST00000508800 WRNQ14191 1432 aaPredicted RBP eCLIP20.78■□□□□ 0.92
NEDD9-212ENST00000508800 DIP2BQ9P265 1576 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms